Biogenesis of flavor-related linalool is diverged and genetically conserved in tree peony (Paeonia × suffruticosa)

Floral scent is an important and genetically complex trait in horticultural plants.Tree peony(Paeonia×suffruticosa)originates in the Pan-Himalaya and has nine wild species divided into two subsections,Delavayanae and Vaginatae.Their f lowers are beloved worldwide for their sweet f loral fragrance,yet the f lavor-related volatiles and underlying biosynthetic pathways remain unknown.Here,we characterized the volatile blends of all wild tree peony species and found that the flavor-related volatiles were highly divergent,but linalool was a unique monoterpene in subsect.Delavayanae.Further detection of volatiles in 97 cultivars with various genetic backgrounds showed that linalool was also the characteristic aroma component in Paeonia delavayi hybrid progenies,suggesting that linalool was conserved and dominant within subsect.Delavayanae and its hybrids,instead of species and cultivars from subsect.Vaginatae.Global transcriptome analysis of all wild tree peony species and 60 cultivars revealed five candidate genes that may be involved in key steps of linalool biosynthesis;especially the expressions of three TPS genes,PdTPS1,PdTPS2,and PdTPS4,were significantly positively correlated with linalool emissions across tree peony cultivars.Further biochemical evidence demonstrated that PdTPS1 and PdTPS4were the pivotal genes determining the species-specific and cultivar-specific emission of linalool.This study revealed a new insight into floral scent divergence in tree peony and would greatly facilitate our understanding of the phylogeny and evolution of Paeonia.

Identification of clade-wide putative cis-regulatory elements from conserved non-coding sequences in Cucurbitaceae genomes

Cis-regulatory elements regulate gene expression and play an essential role in the development and physiology of organisms.Many conserved non-coding sequences(CNSs)function as cis-regulatory elements.They control the development of various lineages.How-ever,predicting clade-wide cis-regulatory elements across several closely related species remains challenging.Based on the relationship between CNSs and cis-regulatory elements,we present a computational approach that predicts the clade-wide putative cis-regulatory elements in 12 Cucurbitaceae genomes.Using 12-way whole-genome alignment,we first obtained 632112 CNSs in Cucurbitaceae.Next,we identified 16552 Cucurbitaceae-wide cis-regulatory elements based on collinearity among all 12 Cucurbitaceae plants.Furthermore,we predicted 3271 potential regulatory pairs in the cucumber genome,of which 98 were verified using integrative RNA sequencing and ChIP sequencing datasets from samples collected during various fruit development stages.The CNSs,Cucurbitaceae-wide cis-regulatory elements,and their target genes are accessible at http://cmb.bnu.edu.cn/cisRCNEs_cucurbit/.These elements are valuable resources for functionally annotating CNSs and their regulatory roles in Cucurbitaceae genomes.

Conformal invariance and conserved quantity of third-order Lagrange equations for non-conserved mechanical systems

This paper studies conformal invariance and conserved quantity of third-order Lagrange equations for non- conserved mechanical systems. Third-order Lagrange equations, the definition and a determining equation of conformal invariance of the system are presented. The conformal factor expression is deduced from conformal invariance and Lie symmetry. The necessary and sufficient condition that conformal invaxiance of the system would have Lie symmetry under single-parameter infinitesimal transformations is obtained. The corresponding conserved quantity of conformal invariance is derived with the aid of a structure equation. Lastly, an example is given to illustrate the application of the results.

Lie symmetries and conserved quantities for generalized Birkhoff system

To study Lie symmetry and the conserved quantity of a generalized Birkhoff system with additional terms, the determining equations of the Lie symmetry of the system is derived. A con- served quantity of Hojman＇ s type and a Noether＇ s conserved quantity are deduced by the Lie symme- try under some conditions. One example is given to illustrate the application of the result.

A symmetry and a conserved quantity for the Birkhoff system

A symmetry and a conserved quantity of the Birkhoff system are studied. The symmetry is called the Birkhoff symmetry. Its definition and criterion are given in this paper. A conserved quantity can be deduced by using the symmetry. An example is given to illustrate the application of the result.

Symmetry and Hojman Conserved Quantity of Tznoff Equations for Unilateral Holonomic System

Symmetry of Tzénoff equations for unilateral holonomic system under the infinitesimal transformationsof groups is investigated.Its definitions and discriminant equations of Mei symmetry and Lie symmetry of Tzénoffequations are given.Sufficient and necessary condition of Lie symmetry deduced by the Mei symmetry is also given.Hojman conserved quantity of Tzénoff equations for the system above through special Lie symmetry and Lie symmetryin the condition of special Mei symmetry respectively is obtained.

Noether symmetry and conserved quantity for dynamical system with non-standard Lagrangians on time scales

This paper focuses on studying the Noether symmetry and the conserved quantity with non-standard Lagrangians, namely exponential Lagrangians and power-law Lagrangians on time scales. Firstly, for each case, the Hamilton prin- ciple based on the action with non-standard Lagrangians on time scales is established, with which the corresponding Euler-Lagrange equation is given. Secondly, according to the invariance of the Hamilton action under the infinitesimal transformation, the Noether theorem for the dynamical system with non-standard Lagrangians on time scales is established. The proof of the theorem consists of two steps. First, it is proved under the infinitesimal transformations of a special one-parameter group without transforming time. Second, utilizing the technique of time-re-parameterization, the Noether theorem in a general form is obtained. The Noether-type conserved quantities with non-standard Lagrangians in both clas- sical and discrete cases are given. Finally, an example in Friedmann-Robertson-Walker spacetime and an example about second order Duffing equation are given to illustrate the application of the results.

Mei symmetry and Mei conserved quantity of nonholonomic systems with unilateral Chetaev type in Nielsen style

This paper studies the Mei symmetry and Mei conserved quantity for nonholonomic systems of unilateral Chetaev type in Nielsen style. The differential equations of motion of the system above are established. The definition and the criteria of Mei symmetry, loosely Mei symmetry, strictly Mei symmetry for the system are given in this paper. The existence condition and the expression of Mei conserved quantity are deduced directly by using Mei symmetry. An example is given to illustrate the application of the results.

A new type of conserved quantity of Mei symmetry for the motion of mechanico electrical coupling dynamical systems

We obtain a new type of conserved quantity of Mei symmetry for the motion of mechanico--electrical coupling dynamical systems under the infinitesimal transformations. A criterion of Mei symmetry for the mechanico-electrical coupling dynamical systems is given. Simultaneously, the condition of existence of the new conserved quantity of Mei symmetry for mechanico-electrical coupling dynamical systems is obtained. Finally, an example is given to illustrate the application of the results.

Conformal invariance and Hojman conserved quantities of first order Lagrange systems

In this paper the conformal invariance by infinitesimal transformations of first order Lagrange systems is discussed in detail. The necessary and sufficient conditions of conformal invariance and Lie symmetry simultaneously by the action of infinitesimal transformations are given. Then it gets the Hojman conserved quantities of conformal invariance by the infinitesimal transformations. Finally an example is given to illustrate the application of the results.

A new type of conserved quantity of Lie symmetry for the Lagrange system

This paper studies a new type of conserved quantity which is directly induced by Lie symmetry of the Lagrange system. Firstly, the criterion of Lie symmetry for the Lagrange system is given. Secondly, the conditions of existence of the new conserved quantity as well as its forms are proposed. Lastly, an example is given to illustrate the application of the result.

Conformal invariance and conserved quantity of Hamilton systems

This paper studies conformal invariance and conserved quantities of Hamilton system. The definition and the determining equation of conformal invariance for Hamilton system are provided. The relationship between the conformal invariance and the Lie symmetry are discussed, and the necessary and sufficient condition that the conformal invariance would be the Lie symmetry of the system under the infinitesimal one-parameter transformation group is deduced. It gives the conserved quantities of the system and an example for illustration.

A new type of conserved quantity of Mei symmetry for Lagrange system

This paper studies a new type of conserved quantity which is directly induced by Mei symmetry of the Lagrange system. Firstly, the definition and criterion of Mei symmetry for the Lagrange system are given. Secondly, a coordination function is introduced, and the conditions of existence of the new conserved quantity as well as its forms are proposed. Lastly, an illustrated example is given. The result indicates that the coordination function can be selected properly according to the demand for finding the gauge function, and thereby the gauge function can be found more easily. Furthermore, since the choice of the coordination function has multiformity, many more conserved quantities of Mei symmetry for the Lagrange system can be obtained.

Conformal invariance and conserved quantities of dynamical system of relative motion

This paper discusses in detail the conformal invariance by infinitesimal transformations of a dynamical system of relative motion. The necessary and sufficient conditions of conformal invariance and Lie symmetry are given simultaneously by the action of infinitesimal transformations. Then it obtains the conserved quantities of conformal invariance by the infinitesimal transformations. Finally an example is given to illustrate the application of the results.

Noether symmetry and conserved quantity for a Hamilton system with time delay

In this paper, the Noether symmetries and the conserved quantities for a Hamilton system with time delay are dis-cussed. Firstly, the variational principles with time delay for the Hamilton system are given, and the Hamilton canonical equations with time delay are established. Secondly, according to the invariance of the function under the infinitesimal transformations of the group, the basic formulas for the variational of the Hamilton action with time delay are discussed, the definitions and the criteria of the Noether symmetric transformations and quasi-symmetric transformations with time delay are obtained, and the relationship between the Noether symmetry and the conserved quantity with time delay is studied. In addition, examples are given to illustrate the application of the results.

Structure equation and Mei conserved quantity for Mei symmetry of Appell equation

This paper investigates structure equation and Mei conserved quantity of Mei symmetry of Appell equations for non-Chetaev nonholonomic systems. Appell equations and differential equations of motion for non-Chetaev nonholonomic mechanical systems are established. A new expression of the total derivative of the function with respect to time t along the trajectory of a curve of the system is obtained, the definition and the criterion of Mei symmetry of Appell equations under the infinitesimal transformations of groups are also given. The expressions of the structure equation and the Mei conserved quantity of Mei symmetry in the Appell function are obtained. An example is given to illustrate the application of the results.

Lie symmetry and conserved quantity of a system of first-order differential equations

This paper focuses on studying the Lie symmetry and a conserved quantity of a system of first-order differential equations. The determining equations of the Lie symmetry for a system of first-order differential equations, from which a kind of conserved quantity is deduced, are presented. And their general conclusion is applied to a Hamilton system, a Birkhoff system and a generalized Hamilton system. Two examples are given to illustrate the application of the results.

New conserved quantities of Noether-Mei symmetry of mechanical system in phase space

This paper studies two new types of conserved quantities deduced by Noether Mei symmetry of mechanical system in phase space. The definition and criterion of Noether Mei symmetry for the system are given. A coordination function is introduced, and the conditions under which the Noether- Mei symmetry leads to the two types of conserved quantities and the forms of the two types of conserved quantities are obtained. An illustrative example is given. The coordination function can be selected according to the demand for finding the gauge function, and the choice of the coordination function has multiformity, so more conserved quantities deduced from Noether Mei symmetry of mechanical system can be obtained.

Detection of hyper-conserved regions in hepatitis B virus X gene potentially useful for gene therapy

AIM To detect hyper-conserved regions in the hepatitis B virus(HBV) X gene(HBX) 5' region that could be candidates for gene therapy.METHODS The study included 27 chronic hepatitis B treatmentnaive patients in various clinical stages(from chronic infection to cirrhosis and hepatocellular carcinoma, both HBeA g-negative and HBeA g-positive), and infected with HBV genotypes A-F and H. In a serum sample from each patient with viremia > 3.5 log IU/m L, the HBX 5' end region [nucleotide(nt) 1255-1611] was PCRamplified and submitted to next-generation sequencing(NGS). We assessed genotype variants by phylogenetic analysis, and evaluated conservation of this region by calculating the information content of each nucleotide position in a multiple alignment of all unique sequences(haplotypes) obtained by NGS. Conservation at the HBx protein amino acid(aa) level was also analyzed.RESULTS NGS yielded 1333069 sequences from the 27 samples, with a median of 4578 sequences/sample(2487-9279, IQR 2817). In 14/27 patients(51.8%), phylogenetic analysis of viral nucleotide haplotypes showed a complex mixture of genotypic variants. Analysis of the information content in the haplotype multiple alignments detected 2 hyper-conserved nucleotide regions, one in the HBX upstream non-coding region(nt 1255-1286) and the other in the 5' end coding region(nt 1519-1603). This last region coded for a conserved amino acid region(aa 63-76) that partially overlaps a Kunitz-like domain.CONCLUSION Two hyper-conserved regions detected in the HBX 5' end may be of value for targeted gene therapy, regardless of the patients' clinical stage or HBV genotype.

Energetics and conserved quantity of an axially moving string undergoing three-dimensional nonlinear vibration

Nonlinear three-dimensional vibration of axially moving strings is investigated in the view of energetics. The governing equation is derived from the Eulerian equation of motion of a continuum for axially accelerating strings. The time-rate of the total mechanical energy associated with the vibration is calculated for the string with its ends moving in a prescribed way. For a string moving in a constant axial speed and constrained by two fixed ends, a conserved quantity is proved to remain unchanged during three-dimensional vibration, while the string energy is not conserved. An approximate conserved quantity is derived from the conserved quantity in the neighborhood of the straight equilibrium configuration. The approximate conserved quantity is applied to verify the Lyapunov stability of the straight equilibrium configuration. Numerical simulations are performed for a rubber string and a steel string. The results demonstrate the variation of the total mechanical energy and the invariance of the conserved quantity.