Complete genome sequence of a Rodent Torque teno virus in Hainan Island, China and establishment of a real-time PCR for detecting Rodent Torque teno virus 3

Objective:To perform whole-genome sequencing and phylogenetic analysis of the local endemic strain of Rodent Torque teno virus (RoTTV), RoTTV3-HMU1, found in Rattus norvegicus, Haikou City, Hainan Province, and establish a SYBR Green I based real-time PCR detection assay for RoTTV3.Methods: Based on the high-throughput genome sequencing analysis, specific primers were designed and the whole genome sequence was amplified by PCR and Sanger sequencing. Specific detection primers were designed based on the conserved sequences of RoTTV3. The recombinant plasmid contained the whole genome of RoTTV3-HMU1 was constructed as a standard control. The experimental conditions were optimized and the real-time PCR detection assay of RoTTV3 was established.Results: The genomic sequence of RoTTV carried by Rattus norvegicus in Haikou City was successfully sequenced. Phylogenetic analysis indicated that the virus belongs to the RoTTV3 genotype. In this experiment, the real-time PCR detection method of RoTTV3 was established. The standard curve generated had a wide dynamic range from 1×(102-108) copies/μL, with a linear correlation (R2=1.000). The melting curve analysis using SYBR Green showed only one specific melting peak and no primer-dimmers represented. The detection limit was 100 copies/reaction.Discussion: This study was the first report of the RoTTV in Hainan Islands, and its phylogenetic analysis was of great significance to the origin and evolution of RoTTV. The RoTTV3 real-time PCR detection method established in this experiment has a high sensitivity and good specificity, which lays a technical foundation for the epidemiological investigation of RoTTV3.

Research on time structure characteristic of gas concentration sequence in the working face

In the procedure of coal industry production, the losses of the persons and economy caused by the gas explosion accidents are most serious, therefore, prevention and control of the gas explosion accident of the coal mines is an important issue needed to be solved urgently in the safety production work of our coal mines. The characteristic of time structure variation index characteristic was analyzed about gas concentration sequence of three measure points in the NO. 1I 1024 working face. It was found that the value of time variation about three measure points was mostly 1〈δ≤1.5, and gas emission presented consistently strong-clustering state twice, and the value of time variation presented continuous variation state in the active stage of gas concentration. Complex characteristics of the value indicated gas emission was continuously variable in time or space and presented the complex nonlinear characteristics. So the characteristic about gas emission system was correctly depicted and analyzed to gas emission system according to the relation of its state variation and essential of nonlinear system. The result also provided reliable warranty for its continued nonlinear research on gas emission.

A test sequence generation method of zone controller based on timed automata

In order to solve the problem of artificial generation and low efficiency of test sequences for zone controller (ZC), a model-based automatic generation method of test sequence is proposed. Firstly, the timed automata model is established based on function analysis of the zone controller, and the correctness of the model is verified by UPPAAL. Then by parsing the timed automata model files, state information and transition conditions can be extracted to generate test case sets. Finally, according to the serialization conditions of test cases, the test cases are serialized into test sequences by using the improved depth first search algorithm. A case, the ZC controls the train running within its jurisdiction, shows that the method is correct and can effectively improve the efficiency of test sequence generation.

Time Sequence of Himalayan Endogenetic Mineralization on the East Side of the Qinghai-Tibet Plateau

Among the endogenetic deposits in the Sanjiang area and at the west margin of the Yangtze platform, Himalayan deposits are the most important and contribute a large proportion of the resources of superlarge deposits. Among the controlled resources of this region, 84% of copper resources, 67% of Pb-Zn, 31% of Ag, 77% of gold and 24% of tin come from Himalayan deposits on the east side of the Qinghai-Tibet plateau. Himalayan endogenetic mineralization shows a relatively complete sequence evolution in the Sanjiang area and on the west margin of the Yangtze platform. Mineralization is manifested by gold deposits related to K-rich lamprophyre, REE deposits related to alkalic complexes and Cu-Au-polymetallic deposits related to alkaline porphyry. Six sequences of mineralization evolution since 65 Ma B.P. in the Sanjiang area and on the west side of the Yangtze platform can be recognized. Himalayan endogenetic mineralization on the east side of the Qinghai-Tibet plateau reached its peak before the Oligocene, corresponding to episodes I and II of the intracontinental orogenic cycle. Afterwards, mineralization waned obviously.

Aviation multi-station collaborative detecting based on time-frequency correlation of data-link

As an important application research topic of the intelligent aviation multi-station, collaborative detecting must overcome the problem of scouting measurement with status of 'fragmentation', and the NP-hardness problem of matching association between target and measurement in the process of scouting to data-link, which has complicated technical architecture of network construction. In this paper, taking advantage of cooperation mechanism on signal level in the aviation multi-station sympathetic network, a method of obtaining target time difference of arrival (TDOA) measurement using multi-station collaborative detecting based on time-frequency association is proposed. The method can not only achieve matching between target and its measurement, but also obtain TDOA measurement by further evolutionary transaction through refreshing sequential pulse time of arrival (TOA) measurement matrix for matching and correlating. Simulation results show that the accuracy of TDOA measurement has significant superiority over TOA, and detection probability of false TDOA measurement introduced by noise and fake measurement can be reduced effectively.

Detecting damage to offshore platform structures using the time-domain data

A new method that uses time-domain response data under random loading is proposed for detecting damage to the structural elements of offshore platforms. In our study, a time series model with a fitting order was first constructed using the time-domain of noise data. A sensitivity matrix consisting of the first differential of the autoregressive coefficients of the time series models with respect to the stiffness of structural elements was then obtained based on time-domain response data. Locations and severity of damage may then be estimated by solving the damage vector whose components express the degrees of damage to the structural elements. A unique aspect of this detection method is that it requires acceleration history data from only one or a few sensors. This makes it feasible for a limited array of sensors to obtain sufficient data. The efficiency and reliability of the proposed method was demonstrated by applying it to a simplified offshore platform with damage to one element. Numerical simulations show that the use of a few sensors’ acceleration history data, when compared with recorded levels of noise, is capable of detecting damage efficiently. An increase in the number of sensors helps improve the diagnosis success rate.

Research on the Application of Time Structure Variation Analysis to the Jiashi-Bachu Earthquake Swarm Sequence

In 1997 - 2003, 27 earthquakes with M≥ 5.0 occurred in the Jiashi-Bachu area of Xinjiang. It was a rare strong earthquake swarm activity. The earthquake swarm has three time segments of activity with different magnitudes in the years 1997, 1998 and 2003. In different time segments, the seismic activity showed strengthenin-qguiet changes in various degrees before earthquakes with M ≥ 5.0. In order to delimitate effectively the precursory meaning of the clustering （strengthening） quiet change in sequence and to seek the time criterion for impending prediction, the nonlinear characteristics of seismic activity have been used to analyze the time structure characteristics of the earthquake swarm sequence, and further to forecast the development tendency of earthquake sequences in the future. Using the sequence catalogue recorded by the Kashi Station, and taking the earthquakes with Ms≥ 5.0 in the sequence as the starting point and the next earthquake with Ms = 5.0 as the end, statistical analysis has been performed on the time structure relations of the earthquake sequence in different stages. The main results are as follows： （1） Before the major earthquakes with M ≥ 5.0 in the swarm sequence, the time variation coefficient （δ-value） has abnormal demonstrations to different degrees. （2） Within 10 days after δ= 1, occurrence of earthquakes with M ≥ 5.0 in the swarm is very possible. （3） The time variation coefficient has three types of change. （4） The change process before earthquakes with M5.0 is similar to that before earthquakes with M6.0, with little difference in the threshold value. In the earthquake swarm sequence, it is difficult to delimitate accurately the attribute of the current sequences （foreshock or aftershock sequence） and to judge the magnitude of the follow-up earthquake by δ-value. We can only make the judgment that earthquakes with M5.0 are likely to occur in the sequence. （5） The critical clustering characteristics of the sequence are hierarchical. Only corresponding to a certain magnitude can the sequence have the variation state of critical clustering. （6） The coefficient of the time variation has a clear meaning in physics. After the clustering-quiet state of earthquake activity has appeared, it can describe clearly the randomness of the seismogenic system. Furthermore, it can efficiently clarify whether or not the clustering quiescence variation is of some prognostic meaning. In the case that the earthquake frequency attenuation is essentially normal （h 〉 1 ） and there is no remarkable clustering-quiescence state, it is still possible to discover the abnormal change of the sequence from the time variation coefficient. On the contrary, in the later period of swarm activity, after the appearance of many seismic quiescence phenomena, this coefficient did not appear abnormally, even when h 〈 1, suggesting that the δ-value diagnosis is more universal.

A Simple and Reliable Assay for Detecting Specifi c Nucleotide Sequences in Plants Using Optical Thin-fi lm Biosensor Chips

Here we report the adaptation and optimization of an effi cient, accurate and inexpensive assay that employs custom-designed silicon-based optical thin-fi lm biosensor chips to detect unique transgenes in genetically modi-

A Hybrid Estimation of Distribution Algorithm for Unrelated Parallel Machine Scheduling with Sequence-Dependent Setup Times

A hybrid estimation of distribution algorithm (EDA) with iterated greedy (IG) search (EDA-IG) is proposed for solving the unrelated parallel machine scheduling problem with sequence-dependent setup times (UPMSP-SDST). For makespan criterion, some properties about neighborhood search operators to avoid invalid search are derived. A probability model based on neighbor relations of jobs is built in the EDA-based exploration phase to generate new solutions by sampling the promising search region. Two types of deconstruction and reconstruction as well as an IG search are designed in the IG-based exploitation phase. Computational complexity of the algorithm is analyzed, and the effect of parameters is investigated by using the Taguchi method of design-of-experiment. Numerical tests on 1640 benchmark instances are carried out. The results and comparisons demonstrate the effectiveness of the EDA-IG. Especially, the bestknown solutions of 531 instances are updated. In addition, the effectiveness of the properties is also demonstrated by numerical comparisons. © 2014 Chinese Association of Automation.

Real Time Power Monitoring Detection Based on Sequence Time Domain Reflectometry Approach

Sequence Time Domain Reflectometry (STDR) have been demonstrated to be a powerful technique for detecting the length of cable or length of open circuit or short circuit cables. Using this method along with using smart meter on the main electrical panel board to monitor consumption if load at each circuit, enable user to monitor power consumption at each node (power outlet) only by operating a smart digital meter and an STDR circuitry on each circuit at the main electrical panel board. This paper introduces this method and examines it on dead-wire and energized wire with a load connected across it. Experimental results are demonstrated for both types. Test result show the potential application of this approach to provide consumption information and potential cost saving via feedback for users.

Single Machine Scheduling with Time-Dependent Learning Effect and Non-Linear Past-Sequence-Dependent Setup Times

This paper studies a single machine scheduling problem with time-dependent learning and setup times. Time-dependent learning means that the actual processing time of a job is a function of the sum of the normal processing times of the jobs already scheduled. The setup time of a job is proportional to the length of the already processed jobs, that is, past-sequence-dependent (psd) setup time. We show that the addressed problem remains polynomially solvable for the objectives, i.e., minimization of the total completion time and minimization of the total weighted completion time. We also show that the smallest processing time (SPT) rule provides the optimum sequence for the addressed problem.

Defect Detection Model Using Time Series Data Augmentation and Transformation

Time-series data provide important information in many fields,and their processing and analysis have been the focus of much research.However,detecting anomalies is very difficult due to data imbalance,temporal dependence,and noise.Therefore,methodologies for data augmentation and conversion of time series data into images for analysis have been studied.This paper proposes a fault detection model that uses time series data augmentation and transformation to address the problems of data imbalance,temporal dependence,and robustness to noise.The method of data augmentation is set as the addition of noise.It involves adding Gaussian noise,with the noise level set to 0.002,to maximize the generalization performance of the model.In addition,we use the Markov Transition Field(MTF)method to effectively visualize the dynamic transitions of the data while converting the time series data into images.It enables the identification of patterns in time series data and assists in capturing the sequential dependencies of the data.For anomaly detection,the PatchCore model is applied to show excellent performance,and the detected anomaly areas are represented as heat maps.It allows for the detection of anomalies,and by applying an anomaly map to the original image,it is possible to capture the areas where anomalies occur.The performance evaluation shows that both F1-score and Accuracy are high when time series data is converted to images.Additionally,when processed as images rather than as time series data,there was a significant reduction in both the size of the data and the training time.The proposed method can provide an important springboard for research in the field of anomaly detection using time series data.Besides,it helps solve problems such as analyzing complex patterns in data lightweight.

Cross-Dimension Attentive Feature Fusion Network for Unsupervised Time-Series Anomaly Detection

Time series anomaly detection is crucial in various industrial applications to identify unusual behaviors within the time series data.Due to the challenges associated with annotating anomaly events,time series reconstruction has become a prevalent approach for unsupervised anomaly detection.However,effectively learning representations and achieving accurate detection results remain challenging due to the intricate temporal patterns and dependencies in real-world time series.In this paper,we propose a cross-dimension attentive feature fusion network for time series anomaly detection,referred to as CAFFN.Specifically,a series and feature mixing block is introduced to learn representations in 1D space.Additionally,a fast Fourier transform is employed to convert the time series into 2D space,providing the capability for 2D feature extraction.Finally,a cross-dimension attentive feature fusion mechanism is designed that adaptively integrates features across different dimensions for anomaly detection.Experimental results on real-world time series datasets demonstrate that CAFFN performs better than other competing methods in time series anomaly detection.

Real-time Rescue Target Detection Based on UAV Imagery for Flood Emergency Response

Timely acquisition of rescue target information is critical for emergency response after a flood disaster.Unmanned Aerial Vehicles(UAVs)equipped with remote sensing capabilities offer distinct advantages,including high-resolution imagery and exceptional mobility,making them well suited for monitoring flood extent and identifying rescue targets during floods.However,there are some challenges in interpreting rescue information in real time from flood images captured by UAVs,such as the complexity of the scenarios of UAV images,the lack of flood rescue target detection datasets and the limited real-time processing capabilities of the airborne on-board platform.Thus,we propose a real-time rescue target detection method for UAVs that is capable of efficiently delineating flood extent and identifying rescue targets(i.e.,pedestrians and vehicles trapped by floods).The proposed method achieves real-time rescue information extraction for UAV platforms by lightweight processing and fusion of flood extent extraction model and target detection model.The flood inundation range is extracted by the proposed method in real time and detects targets such as people and vehicles to be rescued based on this layer.Our experimental results demonstrate that the Intersection over Union(IoU)for flood water extraction reaches an impressive 80%,and the IoU for real-time flood water extraction stands at a commendable 76.4%.The information on flood stricken targets extracted by this method in real time can be used for flood emergency rescue.

Nonlinear Time-Varying Systems Identification Using Basis Sequence Expansions Combined with Neural Networks

A new method for identifying nonlinear time varying systems with unknown structure is presented. The method extends the application area of basis sequence identification. The essential idea is to utilize the learning and nonlinear approximating ability of neural networks to model the non linearity of the system, characterize time varying dynamics of the system by the time varying parametric vector of the network, then the parametric vector of the network is approximated by a weighted sum of known basis sequences. Because of black box modeling ability of neural networks, the presented method can identify nonlinear time varying systems with unknown structure. In order to improve the real time capability of the algorithm, the neural network is trained by a simple fast learning algorithm based on local least squares presented by the authors. The effectiveness and the performance of the method are demonstrated by some simulation results.

The asymptotic relation between the first crossing point and the last exit time of Gaussian order statistics sequences

In this paper,we study the asymptotic relation between the first crossing point and the last exit time for Gaussian order statistics which are generated by stationary weakly and strongly dependent Gaussian sequences.It is shown that the first crossing point and the last exit time are asymptotically independent and dependent for weakly and strongly dependent cases,respectively.The asymptotic relations between the first crossing point and the last exit time for stationary weakly and strongly dependent Gaussian sequences are also obtained.

GAS DETECTING AND FORECASTING VIA TIME SERIES METHOD

The importance and urgency of gas detecting and forecasting in underground coal mining are self-evident. Unfortunately, this problem has not yet been solved thoroughly.In this paper, the author suggests that the time series analysis method be adopted for processing the gas stochastic data. The time series method is superior to the conventional Fourier analysis in some aspects, especially, the time series method possesses forecasting (or prediction) function which is highly valuable for gas monitoring.An example of a set of gas data sampled from a certain foul coal mine is investigated and an AR (3) model is established. The fitting result and the forecasting error are accepted satisfactorily.At the end of this paper several remarks are presented for further discussion.

Identical Machine Scheduling Problem with Sequence-Dependent Setup Times: MILP Formulations Computational Study

This work aims to give a systematic construction of the two families of mixed-integer-linear-programming (MILP) formulations, which are graph- based and sequence-based, of the well-known scheduling problem. Two upper bounds of job completion times are introduced. A numerical test result analysis is conducted with a two-fold objective 1) testing the performance of each solving methods, and 2) identifying and analyzing the tractability of an instance according to the instance structure in terms of the number of machines, of the jobs setup time lengths and of the jobs release date distribution over the scheduling horizon.

一种基于real-time PCR技术的TTV检测方法的建立及应用

目的:本研究旨在开发一种具有更高灵敏度和特异性的TTV检测技术,为揭示TTV在多种疾病过程中的作用提供重要的技术支持。方法:为了更精确、灵敏的检测TTV,本研究分析了目前公布的所有亚型的TTV基因序列,在此基础上建立了一种基于UTR区域的real-time PCR检测方法,并与文献报道应用较为广泛的PCR检测方法进行了对比。结果:本研究建立的方法在1×10^(7)~1×10^(1) copies/μL标准品浓度范围内具有良好的线性关系,相关系数为1.000,斜率为-3.446,检测下限为1×10^(1) copies/μL。重复性试验结果显示,组内变异系数为7.22%,表明本方法重复性、稳定性较强。针对30份临床样本,使用本研究建立的real-time PCR检测方法及目前被多个研究所使用的4套引物进行对比。结果表明,本研究所建立的方法灵敏度显著高于文献中报道的4种方法(P<0.01);Sanger测序结果表明,本方法检测出的30份阳性样本均为TTV,检测特异性为100%。结论:本研究采用基于TaqMan探针的real-time PCR检测方法,检测灵敏性高、覆盖基因型范围广,尤其对于TTV病毒载量较低的情况下能够进行定量检测,对于TTV病毒的致病性及作为免疫标志物的应用提供重要的技术支持。