This study explores the impact of hyperparameter optimization on machine learning models for predicting cardiovascular disease using data from an IoST(Internet of Sensing Things)device.Ten distinct machine learning ap...This study explores the impact of hyperparameter optimization on machine learning models for predicting cardiovascular disease using data from an IoST(Internet of Sensing Things)device.Ten distinct machine learning approaches were implemented and systematically evaluated before and after hyperparameter tuning.Significant improvements were observed across various models,with SVM and Neural Networks consistently showing enhanced performance metrics such as F1-Score,recall,and precision.The study underscores the critical role of tailored hyperparameter tuning in optimizing these models,revealing diverse outcomes among algorithms.Decision Trees and Random Forests exhibited stable performance throughout the evaluation.While enhancing accuracy,hyperparameter optimization also led to increased execution time.Visual representations and comprehensive results support the findings,confirming the hypothesis that optimizing parameters can effectively enhance predictive capabilities in cardiovascular disease.This research contributes to advancing the understanding and application of machine learning in healthcare,particularly in improving predictive accuracy for cardiovascular disease management and intervention strategies.展开更多
The traditional method of screening plants for disease resistance phenotype is both time-consuming and costly.Genomic selection offers a potential solution to improve efficiency,but accurately predicting plant disease...The traditional method of screening plants for disease resistance phenotype is both time-consuming and costly.Genomic selection offers a potential solution to improve efficiency,but accurately predicting plant disease resistance remains a challenge.In this study,we evaluated eight different machine learning(ML)methods,including random forest classification(RFC),support vector classifier(SVC),light gradient boosting machine(lightGBM),random forest classification plus kinship(RFC_K),support vector classification plus kinship(SVC_K),light gradient boosting machine plus kinship(lightGBM_K),deep neural network genomic prediction(DNNGP),and densely connected convolutional networks(DenseNet),for predicting plant disease resistance.Our results demonstrate that the three plus kinship(K)methods developed in this study achieved high prediction accuracy.Specifically,these methods achieved accuracies of up to 95%for rice blast(RB),85%for rice black-streaked dwarf virus(RBSDV),and 85%for rice sheath blight(RSB)when trained and applied to the rice diversity panel I(RDPI).Furthermore,the plus K models performed well in predicting wheat blast(WB)and wheat stripe rust(WSR)diseases,with mean accuracies of up to 90%and 93%,respectively.To assess the generalizability of our models,we applied the trained plus K methods to predict RB disease resistance in an independent population,rice diversity panel II(RDPII).Concurrently,we evaluated the RB resistance of RDPII cultivars using spray inoculation.Comparing the predictions with the spray inoculation results,we found that the accuracy of the plus K methods reached 91%.These findings highlight the effectiveness of the plus K methods(RFC_K,SVC_K,and lightGBM_K)in accurately predicting plant disease resistance for RB,RBSDV,RSB,WB,and WSR.The methods developed in this study not only provide valuable strategies for predicting disease resistance,but also pave the way for using machine learning to streamline genome-based crop breeding.展开更多
In recent years, the development of artificial intelligence (AI) and the gradual beginning of AI’s research in themedical field have allowed people to see the excellent prospects of the integration of AI and healthca...In recent years, the development of artificial intelligence (AI) and the gradual beginning of AI’s research in themedical field have allowed people to see the excellent prospects of the integration of AI and healthcare. Amongthem, the hot deep learning field has shown greater potential in applications such as disease prediction and drugresponse prediction. From the initial logistic regression model to the machine learning model, and then to thedeep learning model today, the accuracy of medical disease prediction has been continuously improved, and theperformance in all aspects has also been significantly improved. This article introduces some basic deep learningframeworks and some common diseases, and summarizes the deep learning prediction methods correspondingto different diseases. Point out a series of problems in the current disease prediction, and make a prospect for thefuture development. It aims to clarify the effectiveness of deep learning in disease prediction, and demonstrates thehigh correlation between deep learning and the medical field in future development. The unique feature extractionmethods of deep learning methods can still play an important role in future medical research.展开更多
Objectives Hand,foot and mouth disease(HFMD)is a widespread infectious disease that causes a significant disease burden on society.To achieve early intervention and to prevent outbreaks of disease,we propose a novel w...Objectives Hand,foot and mouth disease(HFMD)is a widespread infectious disease that causes a significant disease burden on society.To achieve early intervention and to prevent outbreaks of disease,we propose a novel warning model that can accurately predict the incidence of HFMD.Methods We propose a spatial-temporal graph convolutional network(STGCN)that combines spatial factors for surrounding cities with historical incidence over a certain time period to predict the future occurrence of HFMD in Guangdong and Shandong between 2011 and 2019.The 2011-2018 data served as the training and verification set,while data from 2019 served as the prediction set.Six important parameters were selected and verified in this model and the deviation was displayed by the root mean square error and the mean absolute error.Results As the first application using a STGCN for disease forecasting,we succeeded in accurately predicting the incidence of HFMD over a 12-week period at the prefecture level,especially for cities of significant concern.Conclusions This model provides a novel approach for infectious disease prediction and may help health administrative departments implement effective control measures up to 3 months in advance,which may significantly reduce the morbidity associated with HFMD in the future.展开更多
Real-time disease prediction has emerged as the main focus of study in the field of computerized medicine.Intelligent disease identification framework can assist medical practitioners in diagnosing disease in a way th...Real-time disease prediction has emerged as the main focus of study in the field of computerized medicine.Intelligent disease identification framework can assist medical practitioners in diagnosing disease in a way that is reliable,consistent,and timely,successfully lowering mortality rates,particularly during endemics and pandemics.To prevent this pandemic’s rapid and widespread,it is vital to quickly identify,confine,and treat affected individuals.The need for auxiliary computer-aided diagnostic(CAD)systems has grown.Numerous recent studies have indicated that radiological pictures contained critical information regarding the COVID-19 virus.Utilizing advanced convolutional neural network(CNN)architectures in conjunction with radiological imaging makes it possible to provide rapid,accurate,and extremely useful susceptible classifications.This research work proposes a methodology for real-time detection of COVID-19 infections caused by the Corona Virus.The purpose of this study is to offer a two-way COVID-19(2WCD)diagnosis prediction deep learning system that is built on Transfer Learning Methodologies(TLM)and features customized fine-tuning on top of fully connected layered pre-trained CNN architectures.2WCD has applied modifications to pre-trained models for better performance.It is designed and implemented to improve the generalization ability of the classifier for binary and multi-class models.Along with the ability to differentiate COVID-19 and No-Patient in the binary class model and COVID-19,No-Patient,and Pneumonia in the multi-class model,our framework is augmented with a critical add-on for visually demonstrating infection in any tested radiological image by highlighting the affected region in the patient’s lung in a recognizable color pattern.The proposed system is shown to be extremely robust and reliable for real-time COVID-19 diagnostic prediction.It can also be used to forecast other lung-related disorders.As the system can assist medical practitioners in diagnosing the greatest number of patients in the shortestamount of time, radiologists can also be used or published online to assistany less-experienced individual in obtaining an accurate immediate screeningfor their radiological images.展开更多
Heart disease,which is also known as cardiovascular disease,includes various conditions that affect the heart and has been considered a major cause of death over the past decades.Accurate and timely detection of heart...Heart disease,which is also known as cardiovascular disease,includes various conditions that affect the heart and has been considered a major cause of death over the past decades.Accurate and timely detection of heart disease is the single key factor for appropriate investigation,treatment,and prescription of medication.Emerging technologies such as fog,cloud,and mobile computing provide substantial support for the diagnosis and prediction of fatal diseases such as diabetes,cancer,and cardiovascular disease.Cloud computing provides a cost-efficient infrastructure for data processing,storage,and retrieval,with much of the extant research recommending machine learning(ML)algorithms for generating models for sample data.ML is considered best suited to explore hidden patterns,which is ultimately helpful for analysis and prediction.Accordingly,this study combines cloud computing with ML,collecting datasets from different geographical areas and applying fusion techniques to maintain data accuracy and consistency for the ML algorithms.Our recommended model considered three ML techniques:Artificial Neural Network,Decision Tree,and Naïve Bayes.Real-time patient data were extracted using the fuzzy-based model stored in the cloud.展开更多
Multiple Sclerosis(MS) is a major cause of neurological disability in adults and has an annual cost of approximately $28 billion in the United States. MS is a very complex disorder as demyelination can happen in a v...Multiple Sclerosis(MS) is a major cause of neurological disability in adults and has an annual cost of approximately $28 billion in the United States. MS is a very complex disorder as demyelination can happen in a variety of locations throughout the brain; therefore, this disease is never the same in two patients making it very hard to predict disease progression. A modeling approach which combines clinical, biological and imaging measures to help treat and fight this disorder is needed. In this paper, I will outline MS as a very heterogeneous disorder, review some potential solutions from the literature, demonstrate the need for a biomarker and will discuss how computational modeling combined with biological, clinical and imaging data can help link disparate observations and decipher complex mechanisms whose solutions are not amenable to simple reductionism.展开更多
BACKGROUND Coronary artery disease(CAD)is one of the leading causes of death and disease burden in China and worldwide.A practical and reliable prediction scoring system for CAD risk and severity evaluation is urgentl...BACKGROUND Coronary artery disease(CAD)is one of the leading causes of death and disease burden in China and worldwide.A practical and reliable prediction scoring system for CAD risk and severity evaluation is urgently needed for primary prevention.AIM To examine whether the prediction for atherosclerotic cardiovascular disease risk in China(China-PAR)scoring system could be used for this purpose.METHODS A total of 6813 consecutive patients who underwent diagnostic coronary angiography were enrolled.The China-PAR score was calculated for each patient and CAD severity was assessed by the Gensini score(GS).RESULTS Correlation analysis demonstrated a significant relationship between China-PAR and GS(r=0.266,P<0.001).In receiver operating characteristic curve analysis,the cut-off values of China-PAR for predicting the presence and the severity of CAD were 7.55%with a sensitivity of 55.8%and specificity of 71.8%[area under the curve(AUC)=0.693,95%confidence interval:0.681 to 0.706,P<0.001],and 7.45%with a sensitivity of 58.8%and specificity of 67.2%(AUC=0.680,95%confidence interval:0.665 to 0.694,P<0.001),respectively.CONCLUSION The China-PAR scoring system may be useful in predicting the presence and severity of CAD.展开更多
This research work proposes a new stack-based generalization ensemble model to forecast the number of incidences of conjunctivitis disease.In addition to forecasting the occurrences of conjunctivitis incidences,the pr...This research work proposes a new stack-based generalization ensemble model to forecast the number of incidences of conjunctivitis disease.In addition to forecasting the occurrences of conjunctivitis incidences,the proposed model also improves performance by using the ensemble model.Weekly rate of acute Conjunctivitis per 1000 for Hong Kong is collected for the duration of the first week of January 2010 to the last week of December 2019.Pre-processing techniques such as imputation of missing values and logarithmic transformation are applied to pre-process the data sets.A stacked generalization ensemble model based on Auto-ARIMA(Autoregressive Integrated Moving Average),NNAR(Neural Network Autoregression),ETS(Exponential Smoothing),HW(Holt Winter)is proposed and applied on the dataset.Predictive analysis is conducted on the collected dataset of conjunctivitis disease,and further compared for different performance measures.The result shows that the RMSE(Root Mean Square Error),MAE(Mean Absolute Error),MAPE(Mean Absolute Percentage Error),ACF1(Auto Correlation Function)of the proposed ensemble is decreased significantly.Considering the RMSE,for instance,error values are reduced by 39.23%,9.13%,20.42%,and 17.13%in comparison to Auto-ARIMA,NAR,ETS,and HW model respectively.This research concludes that the accuracy of the forecasting of diseases can be significantly increased by applying the proposed stack generalization ensemble model as it minimizes the prediction error and hence provides better prediction trends as compared to Auto-ARIMA,NAR,ETS,and HW model applied discretely.展开更多
Cardiovascular problems have become the predominant cause of death worldwide and a rise in the number of patients has been observed lately.Currently,electrocardiogram(ECG)data is analyzed by medical experts to determi...Cardiovascular problems have become the predominant cause of death worldwide and a rise in the number of patients has been observed lately.Currently,electrocardiogram(ECG)data is analyzed by medical experts to determine the cardiac abnormality,which is time-consuming.In addition,the diagnosis requires experienced medical experts and is error-prone.However,automated identification of cardiovascular disease using ECGs is a challenging problem and state-of-the-art performance has been attained by complex deep learning architectures.This study proposes a simple multilayer perceptron(MLP)model for heart disease prediction to reduce computational complexity.ECG dataset containing averaged signals with window size 10 is used as an input.Several competing deep learning and machine learning models are used for comparison.K-fold cross-validation is used to validate the results.Experimental outcomes reveal that the MLP-based architecture can produce better outcomes than existing approaches with a 94.40%accuracy score.The findings of this study show that the proposed system achieves high performance indicating that it has the potential for deployment in a real-world,practical medical environment.展开更多
Many chronic disease prediction methods have been proposed to predict or evaluate diabetes through artificial neural network.However,due to the complexity of the human body,there are still many challenges to face in t...Many chronic disease prediction methods have been proposed to predict or evaluate diabetes through artificial neural network.However,due to the complexity of the human body,there are still many challenges to face in that process.One of them is how to make the neural network prediction model continuously adapt and learn disease data of different patients,online.This paper presents a novel chronic disease prediction system based on an incremental deep neural network.The propensity of users suffering from chronic diseases can continuously be evaluated in an incremental manner.With time,the system can predict diabetes more and more accurately by processing the feedback information.Many diabetes prediction studies are based on a common dataset,the Pima Indians diabetes dataset,which has only eight input attributes.In order to determine the correlation between the pathological characteristics of diabetic patients and their daily living resources,we have established an in-depth cooperation with a hospital.A Chinese diabetes dataset with 575 diabetics was created.Users’data collected by different sensors were used to train the network model.We evaluated our system using a real-world diabetes dataset to confirm its effectiveness.The experimental results show that the proposed system can not only continuously monitor the users,but also give early warning of physiological data that may indicate future diabetic ailments.展开更多
Wheat is the most important cereal crop,and its low production incurs import pressure on the economy.It fulfills a significant portion of the daily energy requirements of the human body.The wheat disease is one of the...Wheat is the most important cereal crop,and its low production incurs import pressure on the economy.It fulfills a significant portion of the daily energy requirements of the human body.The wheat disease is one of the major factors that result in low production and negatively affects the national economy.Thus,timely detection of wheat diseases is necessary for improving production.The CNN-based architectures showed tremendous achievement in the image-based classification and prediction of crop diseases.However,these models are computationally expensive and need a large amount of training data.In this research,a light weighted modified CNN architecture is proposed that uses eight layers particularly,three convolutional layers,three SoftMax layers,and two flattened layers,to detect wheat diseases effectively.The high-resolution images were collected from the fields in Azad Kashmir(Pakistan)and manually annotated by three human experts.The convolutional layers use 16,32,and 64 filters.Every filter uses a 3×3 kernel size.The strides for all convolutional layers are set to 1.In this research,three different variants of datasets are used.These variants S1-70%:15%:15%,S2-75%:15%:10%,and S3-80%:10%:10%(train:validation:test)are used to evaluate the performance of the proposed model.The extensive experiments revealed that the S3 performed better than S1 and S2 datasets with 93%accuracy.The experiment also concludes that a more extensive training set with high-resolution images can detect wheat diseases more accurately.展开更多
Deep Learning(DL)is known for its golden standard computing paradigm in the learning community.However,it turns out to be an extensively utilized computing approach in the ML field.Therefore,attaining superior outcome...Deep Learning(DL)is known for its golden standard computing paradigm in the learning community.However,it turns out to be an extensively utilized computing approach in the ML field.Therefore,attaining superior outcomes over cognitive tasks based on human performance.The primary benefit of DL is its competency in learning massive data.The DL-based technologies have grown faster and are widely adopted to handle the conventional approaches resourcefully.Specifically,various DL approaches outperform the conventional ML approaches in real-time applications.Indeed,various research works are reviewed to understand the significance of the individual DL models and some computational complexity is observed.This may be due to the broader expertise and knowledge required for handling these models during the prediction process.This research proposes a holistic approach for pneumonia prediction and offers a more appropriate DL model for classification purposes.This work incorporates a novel fused Squeeze and Excitation(SE)block with the ResNet model for pneumonia prediction and better accuracy.The expected model reduces the human effort during the prediction process and makes it easier to diagnose it intelligently as the feature learning is adaptive.The experimentation is carried out in Keras,and the model’s superiority is compared with various advanced approaches.The proposed model gives 90%prediction accuracy,93%precision,90%recall and 89%F1-measure.The proposed model shows a better trade-off compared to other approaches.The evaluation is done with the existing standard ResNet model,GoogleNet+ResNet+DenseNet,and different variants of ResNet models.展开更多
Cardiovascular disease is among the top five fatal diseases that affect lives worldwide.Therefore,its early prediction and detection are crucial,allowing one to take proper and necessary measures at earlier stages.Mac...Cardiovascular disease is among the top five fatal diseases that affect lives worldwide.Therefore,its early prediction and detection are crucial,allowing one to take proper and necessary measures at earlier stages.Machine learning(ML)techniques are used to assist healthcare providers in better diagnosing heart disease.This study employed three boosting algorithms,namely,gradient boost,XGBoost,and AdaBoost,to predict heart disease.The dataset contained heart disease-related clinical features and was sourced from the publicly available UCI ML repository.Exploratory data analysis is performed to find the characteristics of data samples about descriptive and inferential statistics.Specifically,it was carried out to identify and replace outliers using the interquartile range and detect and replace the missing values using the imputation method.Results were recorded before and after the data preprocessing techniques were applied.Out of all the algorithms,gradient boosting achieved the highest accuracy rate of 92.20%for the proposed model.The proposed model yielded better results with gradient boosting in terms of precision,recall,and f1-score.It attained better prediction performance than the existing works and can be used for other diseases that share common features using transfer learning.展开更多
Nowadays,quantum machine learning is attracting great interest in a wide range offields due to its potential superior performance and capabilities.The massive increase in computational capacity and speed of quantum com...Nowadays,quantum machine learning is attracting great interest in a wide range offields due to its potential superior performance and capabilities.The massive increase in computational capacity and speed of quantum computers can lead to a quantum leap in the healthcarefield.Heart disease seriously threa-tens human health since it is the leading cause of death worldwide.Quantum machine learning methods can propose effective solutions to predict heart disease and aid in early diagnosis.In this study,an ensemble machine learning model based on quantum machine learning classifiers is proposed to predict the risk of heart disease.The proposed model is a bagging ensemble learning model where a quantum support vector classifier was used as a base classifier.Further-more,in order to make the model’s outcomes more explainable,the importance of every single feature in the prediction is computed and visualized using SHapley Additive exPlanations(SHAP)framework.In the experimental study,other stand-alone quantum classifiers,namely,Quantum Support Vector Classifier(QSVC),Quantum Neural Network(QNN),and Variational Quantum Classifier(VQC)are applied and compared with classical machine learning classifiers such as Sup-port Vector Machine(SVM),and Artificial Neural Network(ANN).The experi-mental results on the Cleveland dataset reveal the superiority of QSVC compared to the others,which explains its use in the proposed bagging model.The Bagging-QSVC model outperforms all aforementioned classifiers with an accuracy of 90.16%while showing great competitiveness compared to some state-of-the-art models using the same dataset.The results of the study indicate that quantum machine learning classifiers perform better than classical machine learning classi-fiers in predicting heart disease.In addition,the study reveals that the bagging ensemble learning technique is effective in improving the prediction accuracy of quantum classifiers.展开更多
Heart disease is the leading cause of death worldwide.Predicting heart disease is challenging because it requires substantial experience and knowledge.Several research studies have found that the diagnostic accuracy o...Heart disease is the leading cause of death worldwide.Predicting heart disease is challenging because it requires substantial experience and knowledge.Several research studies have found that the diagnostic accuracy of heart disease is low.The coronary heart disorder determines the state that influences the heart valves,causing heart disease.Two indications of coronary heart disorder are strep throat with a red persistent skin rash,and a sore throat covered by tonsils or strep throat.This work focuses on a hybrid machine learning algorithm that helps predict heart attacks and arterial stiffness.At first,we achieved the component perception measured by using a hybrid cuckoo search particle swarm optimization(CSPSO)algorithm.With this perception measure,characterization and accuracy were improved,while the execution time of the proposed model was decreased.The CSPSO-deep recurrent neural network algorithm resolved issues that state-of-the-art methods face.Our proposed method offers an illustrative framework that helps predict heart attacks with high accuracy.The proposed technique demonstrates the model accuracy,which reached 0.97 with the applied dataset.展开更多
Interdisciplinary applications between information technology and geriatrics have been accelerated in recent years by the advancement of artificial intelligence,cloud computing,and 5G technology,among others.Meanwhile...Interdisciplinary applications between information technology and geriatrics have been accelerated in recent years by the advancement of artificial intelligence,cloud computing,and 5G technology,among others.Meanwhile,applications developed by using the above technologies make it possible to predict the risk of age-related diseases early,which can give caregivers time to intervene and reduce the risk,potentially improving the health span of the elderly.However,the popularity of these applications is still limited for several reasons.For example,many older people are unable or unwilling to use mobile applications or devices(e.g.smartphones)because they are relatively complex operations or time-consuming for older people.In this work,we design and implement an end-to-end framework and integrate it with the WeChat platform to make it easily accessible to elders.In this work,multifactorial geriatric assessment data can be collected.Then,stacked machine learning models are trained to assess and predict the incidence of common diseases in the elderly.Experimental results show that our framework can not only provide more accurate prediction(precision:0.8713,recall:0.8212)for several common elderly diseases,but also very low timeconsuming(28.6 s)within a workflow compared to some existing similar applications.展开更多
In this study, the author will investigate and utilize advanced machine learning models related to two different methodologies to determine the best and most effective way to predict individuals with heart failure and...In this study, the author will investigate and utilize advanced machine learning models related to two different methodologies to determine the best and most effective way to predict individuals with heart failure and cardiovascular diseases. The first methodology involves a list of classification machine learning algorithms, and the second methodology involves the use of a deep learning algorithm known as MLP or Multilayer Perceptrons. Globally, hospitals are dealing with cases related to cardiovascular diseases and heart failure as they are major causes of death, not only for overweight individuals but also for those who do not adopt a healthy diet and lifestyle. Often, heart failures and cardiovascular diseases can be caused by many factors, including cardiomyopathy, high blood pressure, coronary heart disease, and heart inflammation [1]. Other factors, such as irregular shocks or stress, can also contribute to heart failure or a heart attack. While these events cannot be predicted, continuous data from patients’ health can help doctors predict heart failure. Therefore, this data-driven research utilizes advanced machine learning and deep learning techniques to better analyze and manipulate the data, providing doctors with informative decision-making tools regarding a person’s likelihood of experiencing heart failure. In this paper, the author employed advanced data preprocessing and cleaning techniques. Additionally, the dataset underwent testing using two different methodologies to determine the most effective machine-learning technique for producing optimal predictions. The first methodology involved employing a list of supervised classification machine learning algorithms, including Naïve Bayes (NB), KNN, logistic regression, and the SVM algorithm. The second methodology utilized a deep learning (DL) algorithm known as Multilayer Perceptrons (MLPs). This algorithm provided the author with the flexibility to experiment with different layer sizes and activation functions, such as ReLU, logistic (sigmoid), and Tanh. Both methodologies produced optimal models with high-level accuracy rates. The first methodology involves a list of supervised machine learning algorithms, including KNN, SVM, Adaboost, Logistic Regression, Naive Bayes, and Decision Tree algorithms. They achieved accuracy rates of 86%, 89%, 89%, 81%, 79%, and 99%, respectively. The author clearly explained that Decision Tree algorithm is not suitable for the dataset at hand due to overfitting issues. Therefore, it was discarded as an optimal model to be used. However, the latter methodology (Neural Network) demonstrated the most stable and optimal accuracy, achieving over 87% accuracy while adapting well to real-life situations and requiring low computing power overall. A performance assessment and evaluation were carried out based on a confusion matrix report to demonstrate feasibility and performance. The author concluded that the performance of the model in real-life situations can advance not only the medical field of science but also mathematical concepts. Additionally, the advanced preprocessing approach behind the model can provide value to the Data Science community. The model can be further developed by employing various optimization techniques to handle even larger datasets related to heart failures. Furthermore, different neural network algorithms can be tested to explore alternative approaches and yield different results.展开更多
Litopenaeus vannamei is the most extensively cultured shrimp species globally,recognized for its scale,production,and economic value.However,its aquaculture is plagued by frequent disease outbreaks,resulting in rapid ...Litopenaeus vannamei is the most extensively cultured shrimp species globally,recognized for its scale,production,and economic value.However,its aquaculture is plagued by frequent disease outbreaks,resulting in rapid and massive mortality.etiological research often lags behind the emergence of new diseases,leaving the causal agents of some shrimp diseases unidentified and leading to nomenclature based on symptomatic presentations,especially in cases involving co-and polymicrobial pathogens.Comprehensive data on shrimp disease statuses remain limited.In this review,we summarize current knowledge on shrimp diseases and their effects on the gut microbiome.Furthermore,we also propose a workflow integrating primary colonizers,“driver”taxa in gut networks from healthy to diseased states,disease-discriminatory taxa,and virulence genes to identify potential polymicrobial pathogens.We examine both abiotic and biotic factors(e.g.,external and internal sources and specific-disease effects)that influence shrimp gut microbiota,with an emphasis on the“holobiome”concept and common features of gut microbiota response to diverse diseases.After excluding the effects of confounding factors,we provide a diagnosis model for quantitatively predicting shrimp disease incidence using disease common-discriminatory taxa,irrespective of the causal agents.Due to the conservation of functional genes used in designing specific primers,we propose a practical strategy applying qPCR-assayed abundances of disease common-discriminatory functional genes.This review updates the roles of the gut microbiota in exploring shrimp etiology,polymicrobial pathogens,and disease incidence,offering a refined perspective for advancing shrimp aquaculture health management.展开更多
基金supported and funded by the Deanship of Scientific Research at Imam Mohammad Ibn Saud Islamic University(IMSIU),Grant Number IMSIU-RG23151.
文摘This study explores the impact of hyperparameter optimization on machine learning models for predicting cardiovascular disease using data from an IoST(Internet of Sensing Things)device.Ten distinct machine learning approaches were implemented and systematically evaluated before and after hyperparameter tuning.Significant improvements were observed across various models,with SVM and Neural Networks consistently showing enhanced performance metrics such as F1-Score,recall,and precision.The study underscores the critical role of tailored hyperparameter tuning in optimizing these models,revealing diverse outcomes among algorithms.Decision Trees and Random Forests exhibited stable performance throughout the evaluation.While enhancing accuracy,hyperparameter optimization also led to increased execution time.Visual representations and comprehensive results support the findings,confirming the hypothesis that optimizing parameters can effectively enhance predictive capabilities in cardiovascular disease.This research contributes to advancing the understanding and application of machine learning in healthcare,particularly in improving predictive accuracy for cardiovascular disease management and intervention strategies.
基金supported by the National Natural Science Foundation of China(32261143468)the National Key Research and Development(R&D)Program of China(2021YFC2600400)+1 种基金the Seed Industry Revitalization Project of Jiangsu Province(JBGS(2021)001)the Project of Zhongshan Biological Breeding Laboratory(BM2022008-02)。
文摘The traditional method of screening plants for disease resistance phenotype is both time-consuming and costly.Genomic selection offers a potential solution to improve efficiency,but accurately predicting plant disease resistance remains a challenge.In this study,we evaluated eight different machine learning(ML)methods,including random forest classification(RFC),support vector classifier(SVC),light gradient boosting machine(lightGBM),random forest classification plus kinship(RFC_K),support vector classification plus kinship(SVC_K),light gradient boosting machine plus kinship(lightGBM_K),deep neural network genomic prediction(DNNGP),and densely connected convolutional networks(DenseNet),for predicting plant disease resistance.Our results demonstrate that the three plus kinship(K)methods developed in this study achieved high prediction accuracy.Specifically,these methods achieved accuracies of up to 95%for rice blast(RB),85%for rice black-streaked dwarf virus(RBSDV),and 85%for rice sheath blight(RSB)when trained and applied to the rice diversity panel I(RDPI).Furthermore,the plus K models performed well in predicting wheat blast(WB)and wheat stripe rust(WSR)diseases,with mean accuracies of up to 90%and 93%,respectively.To assess the generalizability of our models,we applied the trained plus K methods to predict RB disease resistance in an independent population,rice diversity panel II(RDPII).Concurrently,we evaluated the RB resistance of RDPII cultivars using spray inoculation.Comparing the predictions with the spray inoculation results,we found that the accuracy of the plus K methods reached 91%.These findings highlight the effectiveness of the plus K methods(RFC_K,SVC_K,and lightGBM_K)in accurately predicting plant disease resistance for RB,RBSDV,RSB,WB,and WSR.The methods developed in this study not only provide valuable strategies for predicting disease resistance,but also pave the way for using machine learning to streamline genome-based crop breeding.
基金This work was supported in part by the National Natural Science Foundation of China(Nos.61902203,61976242)Key Research and Development Plan-Major Scientific and Technological Innovation Projects of Shandong Province(2019JZZY020101).
文摘In recent years, the development of artificial intelligence (AI) and the gradual beginning of AI’s research in themedical field have allowed people to see the excellent prospects of the integration of AI and healthcare. Amongthem, the hot deep learning field has shown greater potential in applications such as disease prediction and drugresponse prediction. From the initial logistic regression model to the machine learning model, and then to thedeep learning model today, the accuracy of medical disease prediction has been continuously improved, and theperformance in all aspects has also been significantly improved. This article introduces some basic deep learningframeworks and some common diseases, and summarizes the deep learning prediction methods correspondingto different diseases. Point out a series of problems in the current disease prediction, and make a prospect for thefuture development. It aims to clarify the effectiveness of deep learning in disease prediction, and demonstrates thehigh correlation between deep learning and the medical field in future development. The unique feature extractionmethods of deep learning methods can still play an important role in future medical research.
基金supported by grants from the Key Technologies Research and Development Program from the Ministry of Science and Technology[grant number:ZDZX-2018ZX102001002-003-003]the Beijing Natural Science Foundation[project number:L192014]
文摘Objectives Hand,foot and mouth disease(HFMD)is a widespread infectious disease that causes a significant disease burden on society.To achieve early intervention and to prevent outbreaks of disease,we propose a novel warning model that can accurately predict the incidence of HFMD.Methods We propose a spatial-temporal graph convolutional network(STGCN)that combines spatial factors for surrounding cities with historical incidence over a certain time period to predict the future occurrence of HFMD in Guangdong and Shandong between 2011 and 2019.The 2011-2018 data served as the training and verification set,while data from 2019 served as the prediction set.Six important parameters were selected and verified in this model and the deviation was displayed by the root mean square error and the mean absolute error.Results As the first application using a STGCN for disease forecasting,we succeeded in accurately predicting the incidence of HFMD over a 12-week period at the prefecture level,especially for cities of significant concern.Conclusions This model provides a novel approach for infectious disease prediction and may help health administrative departments implement effective control measures up to 3 months in advance,which may significantly reduce the morbidity associated with HFMD in the future.
基金This work was funded by the Researchers Supporting Project Number(RSP-2021/300),King Saud University,Riyadh,Saudi Arabia.
文摘Real-time disease prediction has emerged as the main focus of study in the field of computerized medicine.Intelligent disease identification framework can assist medical practitioners in diagnosing disease in a way that is reliable,consistent,and timely,successfully lowering mortality rates,particularly during endemics and pandemics.To prevent this pandemic’s rapid and widespread,it is vital to quickly identify,confine,and treat affected individuals.The need for auxiliary computer-aided diagnostic(CAD)systems has grown.Numerous recent studies have indicated that radiological pictures contained critical information regarding the COVID-19 virus.Utilizing advanced convolutional neural network(CNN)architectures in conjunction with radiological imaging makes it possible to provide rapid,accurate,and extremely useful susceptible classifications.This research work proposes a methodology for real-time detection of COVID-19 infections caused by the Corona Virus.The purpose of this study is to offer a two-way COVID-19(2WCD)diagnosis prediction deep learning system that is built on Transfer Learning Methodologies(TLM)and features customized fine-tuning on top of fully connected layered pre-trained CNN architectures.2WCD has applied modifications to pre-trained models for better performance.It is designed and implemented to improve the generalization ability of the classifier for binary and multi-class models.Along with the ability to differentiate COVID-19 and No-Patient in the binary class model and COVID-19,No-Patient,and Pneumonia in the multi-class model,our framework is augmented with a critical add-on for visually demonstrating infection in any tested radiological image by highlighting the affected region in the patient’s lung in a recognizable color pattern.The proposed system is shown to be extremely robust and reliable for real-time COVID-19 diagnostic prediction.It can also be used to forecast other lung-related disorders.As the system can assist medical practitioners in diagnosing the greatest number of patients in the shortestamount of time, radiologists can also be used or published online to assistany less-experienced individual in obtaining an accurate immediate screeningfor their radiological images.
文摘Heart disease,which is also known as cardiovascular disease,includes various conditions that affect the heart and has been considered a major cause of death over the past decades.Accurate and timely detection of heart disease is the single key factor for appropriate investigation,treatment,and prescription of medication.Emerging technologies such as fog,cloud,and mobile computing provide substantial support for the diagnosis and prediction of fatal diseases such as diabetes,cancer,and cardiovascular disease.Cloud computing provides a cost-efficient infrastructure for data processing,storage,and retrieval,with much of the extant research recommending machine learning(ML)algorithms for generating models for sample data.ML is considered best suited to explore hidden patterns,which is ultimately helpful for analysis and prediction.Accordingly,this study combines cloud computing with ML,collecting datasets from different geographical areas and applying fusion techniques to maintain data accuracy and consistency for the ML algorithms.Our recommended model considered three ML techniques:Artificial Neural Network,Decision Tree,and Naïve Bayes.Real-time patient data were extracted using the fuzzy-based model stored in the cloud.
文摘Multiple Sclerosis(MS) is a major cause of neurological disability in adults and has an annual cost of approximately $28 billion in the United States. MS is a very complex disorder as demyelination can happen in a variety of locations throughout the brain; therefore, this disease is never the same in two patients making it very hard to predict disease progression. A modeling approach which combines clinical, biological and imaging measures to help treat and fight this disorder is needed. In this paper, I will outline MS as a very heterogeneous disorder, review some potential solutions from the literature, demonstrate the need for a biomarker and will discuss how computational modeling combined with biological, clinical and imaging data can help link disparate observations and decipher complex mechanisms whose solutions are not amenable to simple reductionism.
文摘BACKGROUND Coronary artery disease(CAD)is one of the leading causes of death and disease burden in China and worldwide.A practical and reliable prediction scoring system for CAD risk and severity evaluation is urgently needed for primary prevention.AIM To examine whether the prediction for atherosclerotic cardiovascular disease risk in China(China-PAR)scoring system could be used for this purpose.METHODS A total of 6813 consecutive patients who underwent diagnostic coronary angiography were enrolled.The China-PAR score was calculated for each patient and CAD severity was assessed by the Gensini score(GS).RESULTS Correlation analysis demonstrated a significant relationship between China-PAR and GS(r=0.266,P<0.001).In receiver operating characteristic curve analysis,the cut-off values of China-PAR for predicting the presence and the severity of CAD were 7.55%with a sensitivity of 55.8%and specificity of 71.8%[area under the curve(AUC)=0.693,95%confidence interval:0.681 to 0.706,P<0.001],and 7.45%with a sensitivity of 58.8%and specificity of 67.2%(AUC=0.680,95%confidence interval:0.665 to 0.694,P<0.001),respectively.CONCLUSION The China-PAR scoring system may be useful in predicting the presence and severity of CAD.
基金The authors would like to express their gratitude to Taif University,Taif,Saudi Arabia for providing administrative and technical support.This work was supported by the Taif University Researchers supporting Project number(TURSP-2020/254).
文摘This research work proposes a new stack-based generalization ensemble model to forecast the number of incidences of conjunctivitis disease.In addition to forecasting the occurrences of conjunctivitis incidences,the proposed model also improves performance by using the ensemble model.Weekly rate of acute Conjunctivitis per 1000 for Hong Kong is collected for the duration of the first week of January 2010 to the last week of December 2019.Pre-processing techniques such as imputation of missing values and logarithmic transformation are applied to pre-process the data sets.A stacked generalization ensemble model based on Auto-ARIMA(Autoregressive Integrated Moving Average),NNAR(Neural Network Autoregression),ETS(Exponential Smoothing),HW(Holt Winter)is proposed and applied on the dataset.Predictive analysis is conducted on the collected dataset of conjunctivitis disease,and further compared for different performance measures.The result shows that the RMSE(Root Mean Square Error),MAE(Mean Absolute Error),MAPE(Mean Absolute Percentage Error),ACF1(Auto Correlation Function)of the proposed ensemble is decreased significantly.Considering the RMSE,for instance,error values are reduced by 39.23%,9.13%,20.42%,and 17.13%in comparison to Auto-ARIMA,NAR,ETS,and HW model respectively.This research concludes that the accuracy of the forecasting of diseases can be significantly increased by applying the proposed stack generalization ensemble model as it minimizes the prediction error and hence provides better prediction trends as compared to Auto-ARIMA,NAR,ETS,and HW model applied discretely.
文摘Cardiovascular problems have become the predominant cause of death worldwide and a rise in the number of patients has been observed lately.Currently,electrocardiogram(ECG)data is analyzed by medical experts to determine the cardiac abnormality,which is time-consuming.In addition,the diagnosis requires experienced medical experts and is error-prone.However,automated identification of cardiovascular disease using ECGs is a challenging problem and state-of-the-art performance has been attained by complex deep learning architectures.This study proposes a simple multilayer perceptron(MLP)model for heart disease prediction to reduce computational complexity.ECG dataset containing averaged signals with window size 10 is used as an input.Several competing deep learning and machine learning models are used for comparison.K-fold cross-validation is used to validate the results.Experimental outcomes reveal that the MLP-based architecture can produce better outcomes than existing approaches with a 94.40%accuracy score.The findings of this study show that the proposed system achieves high performance indicating that it has the potential for deployment in a real-world,practical medical environment.
基金funding from the Humanities and Social Sciences Projects of the Ministry of Education(Grant No.18YJC760112,Bin Yang)the Social Science Fund of Jiangsu Province(Grant No.18YSD002,Bin Yang)Open Fund of Hunan Key Laboratory of Smart Roadway and Cooperative Vehicle Infrastructure Systems(Changsha University of Science and Technology)(Grant No.kfj180402,Lingyun Xiang).
文摘Many chronic disease prediction methods have been proposed to predict or evaluate diabetes through artificial neural network.However,due to the complexity of the human body,there are still many challenges to face in that process.One of them is how to make the neural network prediction model continuously adapt and learn disease data of different patients,online.This paper presents a novel chronic disease prediction system based on an incremental deep neural network.The propensity of users suffering from chronic diseases can continuously be evaluated in an incremental manner.With time,the system can predict diabetes more and more accurately by processing the feedback information.Many diabetes prediction studies are based on a common dataset,the Pima Indians diabetes dataset,which has only eight input attributes.In order to determine the correlation between the pathological characteristics of diabetic patients and their daily living resources,we have established an in-depth cooperation with a hospital.A Chinese diabetes dataset with 575 diabetics was created.Users’data collected by different sensors were used to train the network model.We evaluated our system using a real-world diabetes dataset to confirm its effectiveness.The experimental results show that the proposed system can not only continuously monitor the users,but also give early warning of physiological data that may indicate future diabetic ailments.
基金This work is funded by the University of Jeddah,Jeddah,Saudi Arabia(www.uj.edu.sa)under Grant No.UJ-21-DR-135.The authors,therefore,acknowledge the University of Jeddah for technical and financial support.
文摘Wheat is the most important cereal crop,and its low production incurs import pressure on the economy.It fulfills a significant portion of the daily energy requirements of the human body.The wheat disease is one of the major factors that result in low production and negatively affects the national economy.Thus,timely detection of wheat diseases is necessary for improving production.The CNN-based architectures showed tremendous achievement in the image-based classification and prediction of crop diseases.However,these models are computationally expensive and need a large amount of training data.In this research,a light weighted modified CNN architecture is proposed that uses eight layers particularly,three convolutional layers,three SoftMax layers,and two flattened layers,to detect wheat diseases effectively.The high-resolution images were collected from the fields in Azad Kashmir(Pakistan)and manually annotated by three human experts.The convolutional layers use 16,32,and 64 filters.Every filter uses a 3×3 kernel size.The strides for all convolutional layers are set to 1.In this research,three different variants of datasets are used.These variants S1-70%:15%:15%,S2-75%:15%:10%,and S3-80%:10%:10%(train:validation:test)are used to evaluate the performance of the proposed model.The extensive experiments revealed that the S3 performed better than S1 and S2 datasets with 93%accuracy.The experiment also concludes that a more extensive training set with high-resolution images can detect wheat diseases more accurately.
文摘Deep Learning(DL)is known for its golden standard computing paradigm in the learning community.However,it turns out to be an extensively utilized computing approach in the ML field.Therefore,attaining superior outcomes over cognitive tasks based on human performance.The primary benefit of DL is its competency in learning massive data.The DL-based technologies have grown faster and are widely adopted to handle the conventional approaches resourcefully.Specifically,various DL approaches outperform the conventional ML approaches in real-time applications.Indeed,various research works are reviewed to understand the significance of the individual DL models and some computational complexity is observed.This may be due to the broader expertise and knowledge required for handling these models during the prediction process.This research proposes a holistic approach for pneumonia prediction and offers a more appropriate DL model for classification purposes.This work incorporates a novel fused Squeeze and Excitation(SE)block with the ResNet model for pneumonia prediction and better accuracy.The expected model reduces the human effort during the prediction process and makes it easier to diagnose it intelligently as the feature learning is adaptive.The experimentation is carried out in Keras,and the model’s superiority is compared with various advanced approaches.The proposed model gives 90%prediction accuracy,93%precision,90%recall and 89%F1-measure.The proposed model shows a better trade-off compared to other approaches.The evaluation is done with the existing standard ResNet model,GoogleNet+ResNet+DenseNet,and different variants of ResNet models.
基金This work was supported by National Research Foundation of Korea-Grant funded by the Korean Government(MSIT)-NRF-2020R1A2B5B02002478.
文摘Cardiovascular disease is among the top five fatal diseases that affect lives worldwide.Therefore,its early prediction and detection are crucial,allowing one to take proper and necessary measures at earlier stages.Machine learning(ML)techniques are used to assist healthcare providers in better diagnosing heart disease.This study employed three boosting algorithms,namely,gradient boost,XGBoost,and AdaBoost,to predict heart disease.The dataset contained heart disease-related clinical features and was sourced from the publicly available UCI ML repository.Exploratory data analysis is performed to find the characteristics of data samples about descriptive and inferential statistics.Specifically,it was carried out to identify and replace outliers using the interquartile range and detect and replace the missing values using the imputation method.Results were recorded before and after the data preprocessing techniques were applied.Out of all the algorithms,gradient boosting achieved the highest accuracy rate of 92.20%for the proposed model.The proposed model yielded better results with gradient boosting in terms of precision,recall,and f1-score.It attained better prediction performance than the existing works and can be used for other diseases that share common features using transfer learning.
基金supported by Princess Nourah bint Abdulrahman University Researchers Supporting Project number(PNURSP2022R196),Princess Nourah bint Abdulrahman University,Riyadh,Saudi Arabia.
文摘Nowadays,quantum machine learning is attracting great interest in a wide range offields due to its potential superior performance and capabilities.The massive increase in computational capacity and speed of quantum computers can lead to a quantum leap in the healthcarefield.Heart disease seriously threa-tens human health since it is the leading cause of death worldwide.Quantum machine learning methods can propose effective solutions to predict heart disease and aid in early diagnosis.In this study,an ensemble machine learning model based on quantum machine learning classifiers is proposed to predict the risk of heart disease.The proposed model is a bagging ensemble learning model where a quantum support vector classifier was used as a base classifier.Further-more,in order to make the model’s outcomes more explainable,the importance of every single feature in the prediction is computed and visualized using SHapley Additive exPlanations(SHAP)framework.In the experimental study,other stand-alone quantum classifiers,namely,Quantum Support Vector Classifier(QSVC),Quantum Neural Network(QNN),and Variational Quantum Classifier(VQC)are applied and compared with classical machine learning classifiers such as Sup-port Vector Machine(SVM),and Artificial Neural Network(ANN).The experi-mental results on the Cleveland dataset reveal the superiority of QSVC compared to the others,which explains its use in the proposed bagging model.The Bagging-QSVC model outperforms all aforementioned classifiers with an accuracy of 90.16%while showing great competitiveness compared to some state-of-the-art models using the same dataset.The results of the study indicate that quantum machine learning classifiers perform better than classical machine learning classi-fiers in predicting heart disease.In addition,the study reveals that the bagging ensemble learning technique is effective in improving the prediction accuracy of quantum classifiers.
文摘Heart disease is the leading cause of death worldwide.Predicting heart disease is challenging because it requires substantial experience and knowledge.Several research studies have found that the diagnostic accuracy of heart disease is low.The coronary heart disorder determines the state that influences the heart valves,causing heart disease.Two indications of coronary heart disorder are strep throat with a red persistent skin rash,and a sore throat covered by tonsils or strep throat.This work focuses on a hybrid machine learning algorithm that helps predict heart attacks and arterial stiffness.At first,we achieved the component perception measured by using a hybrid cuckoo search particle swarm optimization(CSPSO)algorithm.With this perception measure,characterization and accuracy were improved,while the execution time of the proposed model was decreased.The CSPSO-deep recurrent neural network algorithm resolved issues that state-of-the-art methods face.Our proposed method offers an illustrative framework that helps predict heart attacks with high accuracy.The proposed technique demonstrates the model accuracy,which reached 0.97 with the applied dataset.
基金supported by Xi’an University of Finance and Economics Scientific Research Support Program(No.21FCZD03)Shaanxi Education Department Research Program(No.22JK0077)National Statistical Science Research Project(Nos.2021LZ40,2022LZ38)。
文摘Interdisciplinary applications between information technology and geriatrics have been accelerated in recent years by the advancement of artificial intelligence,cloud computing,and 5G technology,among others.Meanwhile,applications developed by using the above technologies make it possible to predict the risk of age-related diseases early,which can give caregivers time to intervene and reduce the risk,potentially improving the health span of the elderly.However,the popularity of these applications is still limited for several reasons.For example,many older people are unable or unwilling to use mobile applications or devices(e.g.smartphones)because they are relatively complex operations or time-consuming for older people.In this work,we design and implement an end-to-end framework and integrate it with the WeChat platform to make it easily accessible to elders.In this work,multifactorial geriatric assessment data can be collected.Then,stacked machine learning models are trained to assess and predict the incidence of common diseases in the elderly.Experimental results show that our framework can not only provide more accurate prediction(precision:0.8713,recall:0.8212)for several common elderly diseases,but also very low timeconsuming(28.6 s)within a workflow compared to some existing similar applications.
文摘In this study, the author will investigate and utilize advanced machine learning models related to two different methodologies to determine the best and most effective way to predict individuals with heart failure and cardiovascular diseases. The first methodology involves a list of classification machine learning algorithms, and the second methodology involves the use of a deep learning algorithm known as MLP or Multilayer Perceptrons. Globally, hospitals are dealing with cases related to cardiovascular diseases and heart failure as they are major causes of death, not only for overweight individuals but also for those who do not adopt a healthy diet and lifestyle. Often, heart failures and cardiovascular diseases can be caused by many factors, including cardiomyopathy, high blood pressure, coronary heart disease, and heart inflammation [1]. Other factors, such as irregular shocks or stress, can also contribute to heart failure or a heart attack. While these events cannot be predicted, continuous data from patients’ health can help doctors predict heart failure. Therefore, this data-driven research utilizes advanced machine learning and deep learning techniques to better analyze and manipulate the data, providing doctors with informative decision-making tools regarding a person’s likelihood of experiencing heart failure. In this paper, the author employed advanced data preprocessing and cleaning techniques. Additionally, the dataset underwent testing using two different methodologies to determine the most effective machine-learning technique for producing optimal predictions. The first methodology involved employing a list of supervised classification machine learning algorithms, including Naïve Bayes (NB), KNN, logistic regression, and the SVM algorithm. The second methodology utilized a deep learning (DL) algorithm known as Multilayer Perceptrons (MLPs). This algorithm provided the author with the flexibility to experiment with different layer sizes and activation functions, such as ReLU, logistic (sigmoid), and Tanh. Both methodologies produced optimal models with high-level accuracy rates. The first methodology involves a list of supervised machine learning algorithms, including KNN, SVM, Adaboost, Logistic Regression, Naive Bayes, and Decision Tree algorithms. They achieved accuracy rates of 86%, 89%, 89%, 81%, 79%, and 99%, respectively. The author clearly explained that Decision Tree algorithm is not suitable for the dataset at hand due to overfitting issues. Therefore, it was discarded as an optimal model to be used. However, the latter methodology (Neural Network) demonstrated the most stable and optimal accuracy, achieving over 87% accuracy while adapting well to real-life situations and requiring low computing power overall. A performance assessment and evaluation were carried out based on a confusion matrix report to demonstrate feasibility and performance. The author concluded that the performance of the model in real-life situations can advance not only the medical field of science but also mathematical concepts. Additionally, the advanced preprocessing approach behind the model can provide value to the Data Science community. The model can be further developed by employing various optimization techniques to handle even larger datasets related to heart failures. Furthermore, different neural network algorithms can be tested to explore alternative approaches and yield different results.
基金National Natural Science Foundation of China(32371596,32071549)Key Research and Development Project of Zhejiang Province(2021C02062)+2 种基金Key Scientific and Technological Grant of Zhejiang for Breeding New Agricultural Varieties(2021C02069-5-2)Key Project of Ningbo Science and Technology Bureau(2023S003)One Health Interdisciplinary Research Project of Ningbo University(HZ202404)。
文摘Litopenaeus vannamei is the most extensively cultured shrimp species globally,recognized for its scale,production,and economic value.However,its aquaculture is plagued by frequent disease outbreaks,resulting in rapid and massive mortality.etiological research often lags behind the emergence of new diseases,leaving the causal agents of some shrimp diseases unidentified and leading to nomenclature based on symptomatic presentations,especially in cases involving co-and polymicrobial pathogens.Comprehensive data on shrimp disease statuses remain limited.In this review,we summarize current knowledge on shrimp diseases and their effects on the gut microbiome.Furthermore,we also propose a workflow integrating primary colonizers,“driver”taxa in gut networks from healthy to diseased states,disease-discriminatory taxa,and virulence genes to identify potential polymicrobial pathogens.We examine both abiotic and biotic factors(e.g.,external and internal sources and specific-disease effects)that influence shrimp gut microbiota,with an emphasis on the“holobiome”concept and common features of gut microbiota response to diverse diseases.After excluding the effects of confounding factors,we provide a diagnosis model for quantitatively predicting shrimp disease incidence using disease common-discriminatory taxa,irrespective of the causal agents.Due to the conservation of functional genes used in designing specific primers,we propose a practical strategy applying qPCR-assayed abundances of disease common-discriminatory functional genes.This review updates the roles of the gut microbiota in exploring shrimp etiology,polymicrobial pathogens,and disease incidence,offering a refined perspective for advancing shrimp aquaculture health management.