Identification of QTL and candidate genes involved in early seedling growth in rice via high-density genetic mapping and RNA-seq

Early seedling vigor(ESV)is a major breeding target in rice,especially under direct seeding.To identify quantitative trait locus(QTL)affecting ESV,a recombinant inbred line population derived from a cross between 02428 and YZX,two cultivars differing in vigor during early seedling growth,was used for QTL analysis.Nine traits associated with ESV were examined using a high-density map.Of 16 additive loci identified,three were detected in two generations and thus considered stable.Four epistatic interactions were detected,one of which was repeated in two generations.Further analysis of the pyramiding effect of the three stable QTL showed that the phenotypic value could be effectively improved with an increasing number of QTL.These results were combined with results from our previous QTL analysis of the germination index.The lines G58 and G182 combined all the favourable alleles of all three stable QTL for ESV and three QTL for germination speed.These two lines showed rapid germination and strong ESV.A total of 37 candidate differentially expressed genes were obtained from the regions of the three stable QTL by analysis of the dynamic transcriptomic expression profile during the seedling growth period of the two parents.The QTL are targets for ESV breeding and the candidate genes await functional validation.This study provides a theoretical basis and a genetic resource for the breeding of directseeded rice.

Differentiation of Seed Germination and Early Seedling Growth in Ten Provenances of Eucalyptus Microtheca

An investigation of seed germination and early seedling growth of Eucalyptus microtheca was based onseed collection from 10 widely,separated provenanes in Australia. Genetic variation of seed germination and carly seedling growth was observed among a series of provcnances whose natural habitats range from different climatic condition Inthe ten provenances, both the model of seed relative germination percentage and the model of seed total germination percentage fitted Logistic regression [y=a/(1+exp(-cx+b))]. In comparison with provenanccs from four high temperature (meanannual maximum temperature >30.0 ℃: mean annual minimum temperature > 17.0 ℃) areas, six low temperature (meanannual maximum temperature <30℃, mean annual minimum temperature <17.0 ℃) areas showed the thst genninationrate and the high total germination percentage, For each provenance we have 45 seedlings equally divided into three watering levels (100%, 50%. and 25% of field capacity), and studies on relationship between early seedling growth and climaticfactors of the natural habitat of provenance. In control treatment. height growth of the seedling has beeb associated with intrinsically the driest quarter precipitation in the seed collection areas of provenance. In all the treatments, length growth ofthe biggest Ieaf of the seedling was related to mean annual maximum temperature and mean annual minimum temperaturein origin of provenance. In contrast, basal diameter growth of the seedling was related to mean annual minimum temperature of the seed collection areas in water stress treatment. From an ecological viewpint, the fast germination rate and thehigh total germination perecntage of the seed and rapid early grouth of the seedling appear to bc favourable adaptations tothe climatic conditions prevailing in the natural habitat of provenance.

Correlation Analysis between Well-cellar Early Transplanting of Robust Seedlings and Diseases in Shiyan Tobacco-growing Area

[Objectives]The paper was to investigate the relationship between the well-cellar early transplanting of robust seedlings and the prevalence of diseases in the Shiyan tobacco-growing area.[Methods]The relationship between disease occurrence and meteorological factors during the field growth period was examined by analyzing the prevalence of flue-cured tobacco virus diseases,brown spot,and total disease in the Shiyan tobacco-growing area before(2013-2017)and after(2018-2022)the well-cellar early transplanting of robust tobacco seedlings.[Results]The implementation of a well-cellar early transplanting technique of robust seedlings resulted in a reduction in the average incidence of tobacco virus disease,brown spot,and total disease by 0.83%,8.85%,and 7.91%,respectively,in comparison to the incidence observed prior to early transplanting.These findings suggest that early transplanting can significantly reduce the incidence of flue-cured tobacco diseases.Prior to the well-cellar early transplanting of robust tobacco seedlings,there was a significant(including highly significant)positive correlation between the incidence of brown spot and total disease and precipitation in August and September.The incidence of brown spot and total disease in tobacco plants was found to be significantly positively correlated with May precipitation and significantly negatively correlated with May sunshine hours following the well-cellar early transplanting of robust seedlings.The advancement of the transplanting period by 20 d resulted in a reduction in the growing period of tobacco plants in the field under autumn rains(late August to November)in western China.This effectively circumvented the suitable conditions for disease occurrence and can reduce the incidence of disease.[Conclusions]This study offers a framework for enhancing the quality and efficiency of flue-cured tobacco production in the northwest tobacco-growing area of Hubei.

Arabidopsis small ubiquitin-related modifier protease ASP1 positively regulates abscisic acid signaling during early seedling development~~

The small ubiquitin-related modifier （SUMO） modification plays an important role in the regulation of abscisic acid （ABA） signaling, but the function of the SUMO protease, in ABA signaling, remains largely unknown. Here, we show that the SUMO protease, ASPI positively regulates ABA signaling. Mutations in ASPI resulted in an ABA-insensitive phenotype, during early seedling develop- ment. Wild-type ASP1 successfully rescued, whereas an ASPI mutant （C577S）, defective in SUMO protease activity, failed to rescue, the ABA-insensitive phenotype of asp1-1. Expression of ABI5 and MYB3o target genes was attenuated in asp^-I and our genetic analyses revealed that ASP1 may function upstream of ABI5 and MYB3o.

Allelopathic Effects of Cedrus deodara Needle Extracts on Seed Germination and Early Growth of Three Turfgrasses

[Objectives]This study was conducted to provide reference for plant landscaping,optimization of planting structure and rational allocation of species in Cedrus deodara gardens.[Methods]With three common garden plants in northern China,Trifolium repens L.,Poa pratensis L.and Trifolium pratense L.,as receptors,the effects of four concentrations(0.025,0.05,0.075 and 0.10 g/ml)of C.deodara needle extract on seed germination and early seedling growth of the three turfgrasses were studied by the Petri dish filter paper method,using a clear water treatment(0 g/ml)as control check(CK).Data were subjected to analysis of variance(ANOVA)and multiple comparisons(Duncan)using SPSS16.0.[Results]Different concentrations of C.deodara needle extract had significant inhibitory effects on seed germination,radicle and seedling height growth of T.repens,T.pratense and P.pratensis(P<0.05),and the inhibitory effects increased with the increase of concentration.When the concentration reached 0.075 g/ml,seed germination and seedling growth of T.repens stopped,and radicle and seedling growth of T.pratense and P.pratensis also stopped.When the concentration was equal to 0.10 g/ml,germination of T.pratense and P.pratensis seeds was inhibited,and the absolute values of allelopathic index was the largest,that is,the inhibitory effects were the largest.And with the increase of concentration,the absolute value of synthetical allelopathic index also increased.The extract of C.deodara needles contained main allelochemicals leading to the scarcity of understory vegetation.[Conclusions]This study provides a theoretical basis for reasonable garden plant configuration during C.deodara greening and garden landscaping.

Pre-sowing treatments for improved germination and growth of two rare native species of Bangladesh

Pre-sowing treatments are expected to increase seed germination.This evaluates response to pre-sowing treatments and the growth performance of two native and rare tree species,Garuga pinnata Roxb.and Vitex glabrata R.Br.The hard seed coats were treated by rubbing with sand paper,nail clipping,and immersion in water and acid（H_2SO_4）.Results indicate that G.pinnata showed a 90% germination rate and 30% germination energy when seed coats were nicked with a nail clipper.Rubbing with sand paper was the best pre-sowing treatment for V.glabrata,resulting a 80% germination rate and 30% germination energy.G.pinnata and V.glabrata seedlings from seeds soaked 24h in water resulted in maximum heights and collar diameters.These were significantly higher（at p〈0.05） than those of other treatments.The results indicate that scarification or nicking of seeds may have some negative impacts on seedling growth.Therefore,it is difficult to recommend a pre-sowing treatment of seeds for achieving both maximum germination and good early seedling growth.