【目的】基于转录组测序分析溶解氧对四指马鲅(Eleutheronema tetradactylum)幼鱼鳃组织的影响,探究四指马鲅应对低氧胁迫的适应机制,为四指马鲅的抗逆性研究提供参考依据。【方法】以四指马鲅幼鱼为试验材料,设3种溶解氧含量处理,常氧...【目的】基于转录组测序分析溶解氧对四指马鲅(Eleutheronema tetradactylum)幼鱼鳃组织的影响,探究四指马鲅应对低氧胁迫的适应机制,为四指马鲅的抗逆性研究提供参考依据。【方法】以四指马鲅幼鱼为试验材料,设3种溶解氧含量处理,常氧组(CG)6.33±0.15mg/L、中度低氧组(OC4)3.99±0.18mg/L和重度低氧组(OC2)2.05±0.15mg/L,处理29 h,采集鳃组织进行转录组测序,利用DEGseq筛选不同比较组的差异表达基因(DEGs),使用GOseq进行GO功能注释分析,利用KOBAS进行KEGG信号通路富集分析,采用STEM对DEGs进行表达趋势分析。【结果】OC4 vs CG比较组有86个DEGs,其中28个上调表达,58个下调表达;OC2 vs CG比较组有2018个DEGs,其中740个上调表达,1278个下调表达;OC4vsOC2比较组有171个DEGs,其中68个上调表达,103个下调表达。GO功能注释分析结果显示,DEGs主要涉及代谢过程、有机物生物合成、细胞氧化还原平衡、细胞内、染色质、核糖体结构成分和催化活性等功能条目。KEGG信号通路富集分析结果显示,DEGs主要富集在蛋白酶体、DNA复制、脂肪酸降解、磷酸戊糖途径、氧化磷酸化、谷胱甘肽代谢、赖氨酸降解和核糖体生物发生等信号通路;其中pac1、lsm7、mcm6、mcm2和mdm2等基因富集在蛋白酶体、剪接体、DNA复制和细胞周期等信号通路,与四指马鲅幼鱼鳃组织蛋白合成有关,随着溶解氧含量下降,其表达量呈下降趋势;shmt2、hsd17b10、sucla2和glo1等基因富集在磷酸戊糖途径信号通路,与四指马鲅幼鱼鳃组织能量代谢有关。【结论】四指马鲅幼鱼鳃组织蛋白质合成能力和能量代谢活动均随着溶解氧含量下降而下降,溶解氧含量下降显著影响细胞周期、DNA复制、脂肪酸降解和糖代谢等信号通路。展开更多
This paper deals with the proportional distribution, niche breadth and niche overlap of two metazoan parasites(copepods species, Ergasilus anchoratus Markewitsch, 1946 and Pseudergasilus parasiluri Yamaguti, 1936) and...This paper deals with the proportional distribution, niche breadth and niche overlap of two metazoan parasites(copepods species, Ergasilus anchoratus Markewitsch, 1946 and Pseudergasilus parasiluri Yamaguti, 1936) and monogeneans (in the genus Silurodiscoides Gussev, 1976) found on gills of the fish, Silurus asotus L. from Jiangkou Reservoir in Jiangxi Province,China. E.anchoratus was the common and dominant metazoan parasite on gills of the fish in this locality as indicated by the higher infection levels, and distributed almost evenly on gill arches without any observed gill arch preference, as shown by the wide proportional distribution and broad niche breadth. P. parasiluri and monogeneans in Silurodiscoides were found also without any significant gill arch preference although they had a rather narrow niche breadth. The observed significant overlap between P. parasiluri and Silurodiscoides spp. may be simply due to the lower infection levels of the parasites. The observed pattern of unrestricted distributions of the parasitic copepods on gills of the fish may be accounted for, at least in part, by the moving ability of the copepods, and may also indicate that the parasite does not exhibit any feature of gill arch preference. However, further experimental research is needed to verify the microhabitat distribution of the parasites.展开更多
文摘【目的】基于转录组测序分析溶解氧对四指马鲅(Eleutheronema tetradactylum)幼鱼鳃组织的影响,探究四指马鲅应对低氧胁迫的适应机制,为四指马鲅的抗逆性研究提供参考依据。【方法】以四指马鲅幼鱼为试验材料,设3种溶解氧含量处理,常氧组(CG)6.33±0.15mg/L、中度低氧组(OC4)3.99±0.18mg/L和重度低氧组(OC2)2.05±0.15mg/L,处理29 h,采集鳃组织进行转录组测序,利用DEGseq筛选不同比较组的差异表达基因(DEGs),使用GOseq进行GO功能注释分析,利用KOBAS进行KEGG信号通路富集分析,采用STEM对DEGs进行表达趋势分析。【结果】OC4 vs CG比较组有86个DEGs,其中28个上调表达,58个下调表达;OC2 vs CG比较组有2018个DEGs,其中740个上调表达,1278个下调表达;OC4vsOC2比较组有171个DEGs,其中68个上调表达,103个下调表达。GO功能注释分析结果显示,DEGs主要涉及代谢过程、有机物生物合成、细胞氧化还原平衡、细胞内、染色质、核糖体结构成分和催化活性等功能条目。KEGG信号通路富集分析结果显示,DEGs主要富集在蛋白酶体、DNA复制、脂肪酸降解、磷酸戊糖途径、氧化磷酸化、谷胱甘肽代谢、赖氨酸降解和核糖体生物发生等信号通路;其中pac1、lsm7、mcm6、mcm2和mdm2等基因富集在蛋白酶体、剪接体、DNA复制和细胞周期等信号通路,与四指马鲅幼鱼鳃组织蛋白合成有关,随着溶解氧含量下降,其表达量呈下降趋势;shmt2、hsd17b10、sucla2和glo1等基因富集在磷酸戊糖途径信号通路,与四指马鲅幼鱼鳃组织能量代谢有关。【结论】四指马鲅幼鱼鳃组织蛋白质合成能力和能量代谢活动均随着溶解氧含量下降而下降,溶解氧含量下降显著影响细胞周期、DNA复制、脂肪酸降解和糖代谢等信号通路。
文摘This paper deals with the proportional distribution, niche breadth and niche overlap of two metazoan parasites(copepods species, Ergasilus anchoratus Markewitsch, 1946 and Pseudergasilus parasiluri Yamaguti, 1936) and monogeneans (in the genus Silurodiscoides Gussev, 1976) found on gills of the fish, Silurus asotus L. from Jiangkou Reservoir in Jiangxi Province,China. E.anchoratus was the common and dominant metazoan parasite on gills of the fish in this locality as indicated by the higher infection levels, and distributed almost evenly on gill arches without any observed gill arch preference, as shown by the wide proportional distribution and broad niche breadth. P. parasiluri and monogeneans in Silurodiscoides were found also without any significant gill arch preference although they had a rather narrow niche breadth. The observed significant overlap between P. parasiluri and Silurodiscoides spp. may be simply due to the lower infection levels of the parasites. The observed pattern of unrestricted distributions of the parasitic copepods on gills of the fish may be accounted for, at least in part, by the moving ability of the copepods, and may also indicate that the parasite does not exhibit any feature of gill arch preference. However, further experimental research is needed to verify the microhabitat distribution of the parasites.
