Soil fungi play a very important role in the soil ecological environment. In agricultural production, long-term monoculture and continuous cropping lead to changes in fungal community diversity. However, the effects o...Soil fungi play a very important role in the soil ecological environment. In agricultural production, long-term monoculture and continuous cropping lead to changes in fungal community diversity. However, the effects of long-term monoculture and continuous cropping on strawberry plant health and fungal community diversity have not been elucidated. In this study, using high-throughput sequencing(HTS), we compared the fungal community and diversity of strawberry rhizosphere soil after various durations of continuous cropping(0, 2, 4, 6, 8, 10 and 12 years). The results showed that soil fungal diversity increased with consecutive cropping years. Specifically, the soil-borne disease pathogens Fusarium and Guehomyces were significantly increased after strawberry continuous cropping, and the abundance of nematicidal(Arthrobotrys) fungi decreased from the fourth year of continuous cropping. The results of correlation analysis suggest that these three genera might be key fungi that contribute to the changes in soil properties that occur during continuous cropping. In addition, physicochemical property analysis showed that the soil nutrient content began to decline after the fourth year of continuous cropping. Spearman's correlation analysis showed that soil pH, available potassium(AK) and ammonium nitrogen(NH_4^+-N) were the most important edaphic factors leading to contrasting beneficial and pathogenic associations across consecutive strawberry cropping systems.展开更多
Continuous monoculture problems, or replanting diseases, are one of the key factors affecting productivity and quality of Chinese medicinal plants. The underlying mechanism is still being explored. Most of the studies...Continuous monoculture problems, or replanting diseases, are one of the key factors affecting productivity and quality of Chinese medicinal plants. The underlying mechanism is still being explored. Most of the studies on continuous monoculture ofRehmannia glutinosa L. are focused on plant nutritional physiology, root exudate, and its autotoxieity. However, the changes in the diversity of microflora in the rhizosphere mediated by the continuous monoculture pattern have been remained unknown. In this study, terminal restriction fragment length polymorphism （T-RFLP） technique was used for fingerprinting fungal diversity in the rhizosphere soil sampled from the fields ofR. glutinosa monocultured for 1 and 2 yr. The results showed that the structure of fungal community in consecutively moncultured rhizosphere soil was different from that in control soil （no cropping soil）, and varied with the consecutive monoeulture years （1 and 2 yr）. The comprehensive evaluation index （D） of fungal community estimated by principal component analysis of fragment number, peak area, Shannon-Weiner index, and Margalef index was higher in 1 yr monoculture soil than that in 2 yr monoculture soil, suggesting that consecutive monoculture of R. glutinosa could be a causative agent to decrease the diversity of fungal community in the rhizosphere soil.展开更多
Soil fungi in forest ecosystems have great potential to enhance host plant growth and systemic ecological functions and services.Reforestation at Saihanba Mechanized Forest Farm,the world's largest artificial plan...Soil fungi in forest ecosystems have great potential to enhance host plant growth and systemic ecological functions and services.Reforestation at Saihanba Mechanized Forest Farm,the world's largest artificial plantation,has been integral to global forest ecosystem preservation since the 1950s.To better assess the ecological effects of soil microbiology after afforestation,fungal diversity and community structure(using Illumina sequencing)from forests dominated by Larix gmelinii var.principis-rupprechtii,Pinus sylvestris var.mongolica and Picea asperata,and from grassland were surveyed.In total,4,540 operational taxonomic units(OTUs)were identified,with Mortierella and Solicoccozyma being the dominant genera of grassland soil and Inocybe,Cortinarius,Piloderma,Tomentella,Sebacina,Hygrophorus and Saitozyma dominating the plantation soil.Principle coordinate analysis(PCoA)and co-occurrence networks revealed differences in fungal structure after afforestation.Significantly,more symbiotroph guilds were dominated by ectomycorrhizal fungi in plantations under the prediction of FUNGuild.The community composition and diversity of soil fungi were significantly influenced by pH via redundancy analysis(RDA)and the Mantel test(p<0.01).This finding emphasizes that soil pH has a strong effect on the transition of fungal communities and functional taxa from grassland to plantation,providing a novel indicator for forest restoration.展开更多
There have been identified three zones according to the degree of soil pollution with fluoride in the impact area of air emissions of the Kandalaksha Aluminium Smelter (Russia): zone of maximum pollution up to 2.5 km ...There have been identified three zones according to the degree of soil pollution with fluoride in the impact area of air emissions of the Kandalaksha Aluminium Smelter (Russia): zone of maximum pollution up to 2.5 km from the emission source with the content of fluoride from 5000 to 1200 mg/kg, zone of strong pollution up to 13 km from the plant with the content of fluoride between 1200-400 mg/kg and zone of moderate pollution up to 20 km from the source with content of fluoride between 400-200 mg/kg. Emissions of the aluminium plant have reduced the number and the diversity of fungi and have caused an increase in fungal communities that are potentially pathogenic fungi. The biomass of fungi has decreased in the organic horizon of the maximum polluted soil from 5.4 to 3.6 mg/g. As a whole, emissions from the aluminium plant in the Murmansk region are less toxic for the environment, than emissions of copper-nickel enterprises.展开更多
Fungi play a vital role in the management of soil environment. Although various fungal communities are found in soil, it is difficult to determine the fungal community structure in soil. In this study, we conducted a ...Fungi play a vital role in the management of soil environment. Although various fungal communities are found in soil, it is difficult to determine the fungal community structure in soil. In this study, we conducted a comprehensive survey of fungal communities in Japanese Prunus mume orchard soil from 2010 to 2012 growing seasons using next-generation sequencing technology. Fungal DNA was directly extracted from the soil samples and the internal transcribed spacer 1 region was amplified by PCR and sequenced. We identified 34,826 fungal clone sequences from the soil samples. The fungal clones were sorted into 2132 operational taxonomic units and a majority of the discriminated clone sequences were classified as Ascomycota and Basidiomycota. The number of fungal species belonging to Ascomycota showed increases in June in the three growing seasons. That belonging to Glomeromycota showed increases in August in the three growing seasons. As Ascomycota fungi are wood decomposers and saprotrophs, the results suggested that the number of plant pathogenic fungi increased in Japanese P. mume orchard soil in June. These findings show for the first time the annual and seasonal fungal community structures in Japanese P. mume orchard soil, and are expected to provide valuable clues for improvement when planting new P. mume trees in Japanese orchards.展开更多
Rhizosphere hypoxia constrains plant growth,and numerous studies have shown that root zone aeration accelerates plant photosynthesis and growth and increases crop yields.Nevertheless,the mechanism by which soil microo...Rhizosphere hypoxia constrains plant growth,and numerous studies have shown that root zone aeration accelerates plant photosynthesis and growth and increases crop yields.Nevertheless,the mechanism by which soil microorganisms are involved in this process is not clear.The purpose of the present study was to examine the effects of aeration and irrigation depth on the composition and structure of rhizosphere soil fungal communities and tomato plant performance.The amount of aeration assayed was equal to 0(CK),0.5(V1),1(V2),and 1.5(V3)times the porosity of the soil.The two depths of subsurface drip irrigation used were 15(D15)and 40 cm(D40).The results demonstrated that soil aeration not only increased tomato plant performance but also influenced fungal diversity and composition.Compared to the no-aeration treatment,the V3 soil aeration treatment increased the total dry weight and fruit yield by 39.9%and 65.6%,respectively.The results also showed that the abundance of the phylum Ascomycota and the family Lasiosphaeriaceae increased with increasing soil aeration,whereas those of members of the phylum Zygomycota and the order Capnodiales decreased with increasing soil aeration.Moreover,the variation in subsurface irrigation depth altered the rhizosphere soil fungal community.In general,the results of this study demonstrate that root zone aeration can ameliorate hypoxic conditions in Lou soils and is beneficial to soil fungal communities and tomato plant performance.展开更多
Little is known about the responses of soil fungal communities to revegetation of mine wastelands,representing a major gap in the knowledge needed to improve the performances of revegetation schemes for mine wasteland...Little is known about the responses of soil fungal communities to revegetation of mine wastelands,representing a major gap in the knowledge needed to improve the performances of revegetation schemes for mine wastelands.To shed some light on this matter,we reestablished 4000 m^(2) of vegetation on an extremely acidic(pH 2.5)copper mine tailings pond and collected soil samples from three different types of habitats:amended layer of the reclaimed tailings(ALRT),unamended layer of the reclaimed tailings(ULRT),and unreclaimed tailings(UT).Soil fungal communities in the 120 samples collected in two consecutive years were characterized via high-throughput sequencing.The fungal diversities at ALRTand ULRT were found to be significantly higher than those at UT.Ascomycota whose relative abundance ranged from 74.5% to 98.4% was the most predominant phylum across all habitats,exhibiting the lowest predominance at ALRT.Two acidophilic fungal genera,Acidomyces and Acidiella,dominated UT with relative abundances being as high as 37.8% and 15.2%,respectively.In contrast,three genera with plant growth-promoting species(Talaromyces,Trichoderma and Penicillium)were abundant at ULRT and ALRT.Remarkably,their relative abundances at ULRTcould be up to 29.0%,26.9% and 9.7%,respectively.The three types of habitats differed considerably in the overall soil fungal community composition at species level,which became more pronounced as time progressed.The abovementioned differences between habitats in soil fungal community features were related to the reduced availability of soil copper and zinc.These results improved our understanding of fungal ecology of mine wastelands.展开更多
基金funded by the National Science and Technology Support Program of China (2014BAD16B07)
文摘Soil fungi play a very important role in the soil ecological environment. In agricultural production, long-term monoculture and continuous cropping lead to changes in fungal community diversity. However, the effects of long-term monoculture and continuous cropping on strawberry plant health and fungal community diversity have not been elucidated. In this study, using high-throughput sequencing(HTS), we compared the fungal community and diversity of strawberry rhizosphere soil after various durations of continuous cropping(0, 2, 4, 6, 8, 10 and 12 years). The results showed that soil fungal diversity increased with consecutive cropping years. Specifically, the soil-borne disease pathogens Fusarium and Guehomyces were significantly increased after strawberry continuous cropping, and the abundance of nematicidal(Arthrobotrys) fungi decreased from the fourth year of continuous cropping. The results of correlation analysis suggest that these three genera might be key fungi that contribute to the changes in soil properties that occur during continuous cropping. In addition, physicochemical property analysis showed that the soil nutrient content began to decline after the fourth year of continuous cropping. Spearman's correlation analysis showed that soil pH, available potassium(AK) and ammonium nitrogen(NH_4^+-N) were the most important edaphic factors leading to contrasting beneficial and pathogenic associations across consecutive strawberry cropping systems.
基金supported by the National Natural Science Foundation of China (30772729, 30671201, and81072983)the Key Technologies R&D Programof China during the 11th Five-Year Plan period(2006BAI09B03 and 2006BAI06A12-06)
文摘Continuous monoculture problems, or replanting diseases, are one of the key factors affecting productivity and quality of Chinese medicinal plants. The underlying mechanism is still being explored. Most of the studies on continuous monoculture ofRehmannia glutinosa L. are focused on plant nutritional physiology, root exudate, and its autotoxieity. However, the changes in the diversity of microflora in the rhizosphere mediated by the continuous monoculture pattern have been remained unknown. In this study, terminal restriction fragment length polymorphism （T-RFLP） technique was used for fingerprinting fungal diversity in the rhizosphere soil sampled from the fields ofR. glutinosa monocultured for 1 and 2 yr. The results showed that the structure of fungal community in consecutively moncultured rhizosphere soil was different from that in control soil （no cropping soil）, and varied with the consecutive monoeulture years （1 and 2 yr）. The comprehensive evaluation index （D） of fungal community estimated by principal component analysis of fragment number, peak area, Shannon-Weiner index, and Margalef index was higher in 1 yr monoculture soil than that in 2 yr monoculture soil, suggesting that consecutive monoculture of R. glutinosa could be a causative agent to decrease the diversity of fungal community in the rhizosphere soil.
基金This research was supported by the National Natural Science Foundation of China(Nos.32270010,U2003211 and 31870008)Beijing Forestry University Outstanding Young Talent Cultivation Project(No.2019JQ03016).
文摘Soil fungi in forest ecosystems have great potential to enhance host plant growth and systemic ecological functions and services.Reforestation at Saihanba Mechanized Forest Farm,the world's largest artificial plantation,has been integral to global forest ecosystem preservation since the 1950s.To better assess the ecological effects of soil microbiology after afforestation,fungal diversity and community structure(using Illumina sequencing)from forests dominated by Larix gmelinii var.principis-rupprechtii,Pinus sylvestris var.mongolica and Picea asperata,and from grassland were surveyed.In total,4,540 operational taxonomic units(OTUs)were identified,with Mortierella and Solicoccozyma being the dominant genera of grassland soil and Inocybe,Cortinarius,Piloderma,Tomentella,Sebacina,Hygrophorus and Saitozyma dominating the plantation soil.Principle coordinate analysis(PCoA)and co-occurrence networks revealed differences in fungal structure after afforestation.Significantly,more symbiotroph guilds were dominated by ectomycorrhizal fungi in plantations under the prediction of FUNGuild.The community composition and diversity of soil fungi were significantly influenced by pH via redundancy analysis(RDA)and the Mantel test(p<0.01).This finding emphasizes that soil pH has a strong effect on the transition of fungal communities and functional taxa from grassland to plantation,providing a novel indicator for forest restoration.
文摘There have been identified three zones according to the degree of soil pollution with fluoride in the impact area of air emissions of the Kandalaksha Aluminium Smelter (Russia): zone of maximum pollution up to 2.5 km from the emission source with the content of fluoride from 5000 to 1200 mg/kg, zone of strong pollution up to 13 km from the plant with the content of fluoride between 1200-400 mg/kg and zone of moderate pollution up to 20 km from the source with content of fluoride between 400-200 mg/kg. Emissions of the aluminium plant have reduced the number and the diversity of fungi and have caused an increase in fungal communities that are potentially pathogenic fungi. The biomass of fungi has decreased in the organic horizon of the maximum polluted soil from 5.4 to 3.6 mg/g. As a whole, emissions from the aluminium plant in the Murmansk region are less toxic for the environment, than emissions of copper-nickel enterprises.
文摘Fungi play a vital role in the management of soil environment. Although various fungal communities are found in soil, it is difficult to determine the fungal community structure in soil. In this study, we conducted a comprehensive survey of fungal communities in Japanese Prunus mume orchard soil from 2010 to 2012 growing seasons using next-generation sequencing technology. Fungal DNA was directly extracted from the soil samples and the internal transcribed spacer 1 region was amplified by PCR and sequenced. We identified 34,826 fungal clone sequences from the soil samples. The fungal clones were sorted into 2132 operational taxonomic units and a majority of the discriminated clone sequences were classified as Ascomycota and Basidiomycota. The number of fungal species belonging to Ascomycota showed increases in June in the three growing seasons. That belonging to Glomeromycota showed increases in August in the three growing seasons. As Ascomycota fungi are wood decomposers and saprotrophs, the results suggested that the number of plant pathogenic fungi increased in Japanese P. mume orchard soil in June. These findings show for the first time the annual and seasonal fungal community structures in Japanese P. mume orchard soil, and are expected to provide valuable clues for improvement when planting new P. mume trees in Japanese orchards.
基金supported jointly by the Natural Science Foundation of China(Grant No.41831284 and 41807041),the National Key Research and Development Program of China(Grant No.2022YFD1900401)the Key Research and Development Program of Shaanxi(Program No.2022NY-191)+1 种基金the Fundamental Research Funds for the Central Universities(Grant No.GK202103129)the Program of Introducing Talents of Discipline to Universities(Grant No.B16011).
文摘Rhizosphere hypoxia constrains plant growth,and numerous studies have shown that root zone aeration accelerates plant photosynthesis and growth and increases crop yields.Nevertheless,the mechanism by which soil microorganisms are involved in this process is not clear.The purpose of the present study was to examine the effects of aeration and irrigation depth on the composition and structure of rhizosphere soil fungal communities and tomato plant performance.The amount of aeration assayed was equal to 0(CK),0.5(V1),1(V2),and 1.5(V3)times the porosity of the soil.The two depths of subsurface drip irrigation used were 15(D15)and 40 cm(D40).The results demonstrated that soil aeration not only increased tomato plant performance but also influenced fungal diversity and composition.Compared to the no-aeration treatment,the V3 soil aeration treatment increased the total dry weight and fruit yield by 39.9%and 65.6%,respectively.The results also showed that the abundance of the phylum Ascomycota and the family Lasiosphaeriaceae increased with increasing soil aeration,whereas those of members of the phylum Zygomycota and the order Capnodiales decreased with increasing soil aeration.Moreover,the variation in subsurface irrigation depth altered the rhizosphere soil fungal community.In general,the results of this study demonstrate that root zone aeration can ameliorate hypoxic conditions in Lou soils and is beneficial to soil fungal communities and tomato plant performance.
基金supported financially by the Key-Area Research and Development Program of Guangdong Province(No.2019B110207001)the National Natural Science Foundation of China(Nos.41622106,41471257,31600082 and 41603074)the China Postdoctoral Science Foundation(Nos.2018M640798 and 2019M652939).
文摘Little is known about the responses of soil fungal communities to revegetation of mine wastelands,representing a major gap in the knowledge needed to improve the performances of revegetation schemes for mine wastelands.To shed some light on this matter,we reestablished 4000 m^(2) of vegetation on an extremely acidic(pH 2.5)copper mine tailings pond and collected soil samples from three different types of habitats:amended layer of the reclaimed tailings(ALRT),unamended layer of the reclaimed tailings(ULRT),and unreclaimed tailings(UT).Soil fungal communities in the 120 samples collected in two consecutive years were characterized via high-throughput sequencing.The fungal diversities at ALRTand ULRT were found to be significantly higher than those at UT.Ascomycota whose relative abundance ranged from 74.5% to 98.4% was the most predominant phylum across all habitats,exhibiting the lowest predominance at ALRT.Two acidophilic fungal genera,Acidomyces and Acidiella,dominated UT with relative abundances being as high as 37.8% and 15.2%,respectively.In contrast,three genera with plant growth-promoting species(Talaromyces,Trichoderma and Penicillium)were abundant at ULRT and ALRT.Remarkably,their relative abundances at ULRTcould be up to 29.0%,26.9% and 9.7%,respectively.The three types of habitats differed considerably in the overall soil fungal community composition at species level,which became more pronounced as time progressed.The abovementioned differences between habitats in soil fungal community features were related to the reduced availability of soil copper and zinc.These results improved our understanding of fungal ecology of mine wastelands.
