Photocatalytic disinfection has long been used to combat pathogenic bacteria.However,the specific mechanism underlying photocatalytic disinfection and its corresponding targets remain unclear.In this study,an analysis...Photocatalytic disinfection has long been used to combat pathogenic bacteria.However,the specific mechanism underlying photocatalytic disinfection and its corresponding targets remain unclear.In this study,an analysis of the potential mechanism underlying photocatalytic disinfection was performed based on integrated metabolic networks and transcriptional data.Two sets of RNA-seq data(wild type and a photocatalysis-resistant mutant mediated by titanium dioxide(TiO2))were processed to constrain the genome scale metabolic models(GSMM)of E.coli.By analyzing the metabolic network,the differential metabolic flux of every reaction was computed in constrained GSMM,and several significantly differential metabolic fluxes in reactions were extracted and analyzed.Most of these reactions were involved in the transmembrane transport of substances and occurred on the inner membrane or were an important component of the cell membrane.These results,which are consistent with the reported information,validated our analysis process.In addition,our work also identified other new and valuable metabolic pathways,such as the reaction ALCD2x,which has a great effect on the energy production process under bacterial anaerobic conditions.The DHAK reaction is also related to the metabolic process of ATP.These reactions with large differential metabolic fluxes merit further research.Additionally,to provide a strategy to address photocatalysis-resistant mutant bacteria,a metabolic compensation analysis was also performed.The metabolic compensation analysis results provided suggestions for a combined method that can effectively combat resistant bacteria.This method could also be used to explore the mechanisms of drug resistance in other microorganisms.展开更多
基金supported by the National Key R&D Project(No.2017YFD0200506)the Fundamental Research Funds for the Central Universities(No.2662018JC035)。
文摘Photocatalytic disinfection has long been used to combat pathogenic bacteria.However,the specific mechanism underlying photocatalytic disinfection and its corresponding targets remain unclear.In this study,an analysis of the potential mechanism underlying photocatalytic disinfection was performed based on integrated metabolic networks and transcriptional data.Two sets of RNA-seq data(wild type and a photocatalysis-resistant mutant mediated by titanium dioxide(TiO2))were processed to constrain the genome scale metabolic models(GSMM)of E.coli.By analyzing the metabolic network,the differential metabolic flux of every reaction was computed in constrained GSMM,and several significantly differential metabolic fluxes in reactions were extracted and analyzed.Most of these reactions were involved in the transmembrane transport of substances and occurred on the inner membrane or were an important component of the cell membrane.These results,which are consistent with the reported information,validated our analysis process.In addition,our work also identified other new and valuable metabolic pathways,such as the reaction ALCD2x,which has a great effect on the energy production process under bacterial anaerobic conditions.The DHAK reaction is also related to the metabolic process of ATP.These reactions with large differential metabolic fluxes merit further research.Additionally,to provide a strategy to address photocatalysis-resistant mutant bacteria,a metabolic compensation analysis was also performed.The metabolic compensation analysis results provided suggestions for a combined method that can effectively combat resistant bacteria.This method could also be used to explore the mechanisms of drug resistance in other microorganisms.
