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Detection of genomic signatures for pig hairlessness using high-density SNP data
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作者 Ying SU Yi LONG +9 位作者 Xinjun LIAO Huashui AI Zhiyan ZHANG Bin YANG Shijun XIAO Jianhong TANG Wenshui XIN Lusheng HUANG Jun REN Nengshui DING 《Frontiers of Agricultural Science and Engineering》 2014年第4期307-313,共7页
Hair provides thermal regulation for mammals and protects the skin from wounds,bites and ultraviolet(UV)radiation,and is important in adaptation to volatile environments.Pigs in nature are divided into hairy and hairl... Hair provides thermal regulation for mammals and protects the skin from wounds,bites and ultraviolet(UV)radiation,and is important in adaptation to volatile environments.Pigs in nature are divided into hairy and hairless,which provide a good model for deciphering the molecular mechanisms of hairlessness.We conducted a genomic scan for genetically differentiated regions between hairy and hairless pigs using 60K SNP data,with the aim to better understand the genetic basis for the hairless phenotype in pigs.A total of 38405 SNPs in 498 animals from 36 diverse breeds were used to detect genomic signatures for pig hairlessness by estimating between-population(FST)values.Seven diversifying signatures between Yucatan hairless pig and hairy pigs were identified on pig chromosomes(SSC)1,3,7,8,10,11 and 16,and the biological functions of two notable genes,RGS17 and RB1,were revealed.When Mexican hairless pigs were contrasted with hairypigs,strong signatures were detected on SSC1 and SSC10,which harbor two functionally plausible genes,REV3L and BAMBI.KEGG pathway analysis showed a subset of overrepresented genes involved in the T cell receptor signaling pathway,MAPK signaling pathway and the tight junction pathways.All of these pathways may be important in local adaptability of hairless pigs.The potential mechanisms underlying the hairless phenotype in pigs are reported for the first time.RB1 and BAMBI are interesting candidate genes for the hairless phenotype in Yucatan hairless and Mexico hairless pigs,respectively.RGS17,REV3L,ICOS and RASGRP1 as well as other genes involved in the MAPK and T cell receptor signaling pathways may be important in environmental adaption by improved tolerance to UV damage in hairless pigs.These findings improve our understanding of the genetic basis for inherited hairlessness in pigs. 展开更多
关键词 hairlessness PIG selective sweeping
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脂多糖促进牙周膜间充质干细胞组蛋白去甲基化酶HR表达的研究 被引量:2
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作者 张琛 姚睿 范志朋 《口腔医学研究》 CAS 北大核心 2018年第6期648-652,共5页
目的:脂多糖是否对牙周膜间充质干细胞(periodontal ligment stem cells,PDLSCs)中组蛋白去甲基化酶相关基因表达存在调控功能。方法:利用不同剂量的脂多糖对牙周膜干细胞进行刺激处理;在mRNA水平利用实时定量RT-PCR(real time reverse ... 目的:脂多糖是否对牙周膜间充质干细胞(periodontal ligment stem cells,PDLSCs)中组蛋白去甲基化酶相关基因表达存在调控功能。方法:利用不同剂量的脂多糖对牙周膜干细胞进行刺激处理;在mRNA水平利用实时定量RT-PCR(real time reverse transcription-polymerase chain reaction,qRT-PCR)检测组蛋白去甲基化酶相关基因的表达。qRT-PCR结果显示HR(hairless homolog)基因在脂多糖刺激后24h和48h结果显示,能促进HR的表达,其表达升高的水平与脂多糖刺激时间有相关性。1、5和10mg/L脂多糖在作用48h后都能促进HR的表达,其表达升高的水平与脂多糖刺激剂量有相关性。10μg/mL脂多糖抑制牙周膜干细胞体外矿化能力。结论:在牙周膜干细胞中脂多糖对牙周膜干细胞组蛋白去甲基化酶HR的表达有促进作用。 展开更多
关键词 脂多糖 组蛋白去甲基化酶 牙周膜干细胞 HAIRLESS 骨向分化
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内蒙古白绒山羊Hairless基因实时荧光定量PCR标准质粒和标准曲线的构建 被引量:1
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作者 吴萍 张文广 +10 位作者 李金泉 李赛明 杨秀娟 徐磊 常子丽 刘兴亮 丽春 刘维 张燕军 王志新 张永斌 《中国畜牧兽医》 CAS 北大核心 2010年第8期73-78,共6页
根据GenBank中绵羊、牛的Hairless和β-actin基因编码区保守序列,设计特异性引物,提取皮肤组织总RNA,经反转录RT-PCR扩增,产物回收纯化后与pGM-T载体连接,转化大肠杆菌感受态细胞Top10,质粒提取后经酶切、PCR和测序鉴定,获得阳性Hairles... 根据GenBank中绵羊、牛的Hairless和β-actin基因编码区保守序列,设计特异性引物,提取皮肤组织总RNA,经反转录RT-PCR扩增,产物回收纯化后与pGM-T载体连接,转化大肠杆菌感受态细胞Top10,质粒提取后经酶切、PCR和测序鉴定,获得阳性Hairless、β-actin重组质粒;将阳性重组质粒按103~107拷贝/反应梯度稀释作为模板,进行实时荧光定量PCR,系统软件自动生成标准曲线及回归方程。结果显示,产物熔解曲线峰值单一,说明引物特异性高,且无引物二聚体;Hairless和β-actin基因标准曲线相关系数分别为r2=0.998、r2=0.999,说明线性关系好。重复性试验结果显示,所构建的重组质粒9次同条件扩增Ct值具有良好的重现性,且变异率小于6%(107拷贝/反应除外),说明标准曲线重复性好。试验成功构建了目的基因Hairless、内参基因β-actin的标准质粒和标准曲线,为实时荧光定量PCR检测绒山羊Hairless基因的mRNA表达水平奠定基础。 展开更多
关键词 绒山羊 Hairless基因 REAL-TIME PCR 重组质粒 标准曲线
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山羊Hairless基因片段的克隆及序列分析
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作者 陆鸿燕 吴江鸿 张文广 《畜牧与饲料科学》 2010年第2期151-153,共3页
为了探讨Hairless基因在山羊毛发生长中的特异性功能,选用已经报道的Hairless基因的保守序列设计引物,对内蒙古绒山羊的基因组DNA进行PCR扩增,将扩增的目的片段克隆后测序,得到一段长1985bp的DNA序列,共涉及3段外显子和2段内含子,分别... 为了探讨Hairless基因在山羊毛发生长中的特异性功能,选用已经报道的Hairless基因的保守序列设计引物,对内蒙古绒山羊的基因组DNA进行PCR扩增,将扩增的目的片段克隆后测序,得到一段长1985bp的DNA序列,共涉及3段外显子和2段内含子,分别与已公布的牛和绵羊Hairless基因的cDNA序列比对,确定该绒山羊Hairless基因的特异性。 展开更多
关键词 山羊 Hairless基因 基因克隆
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Hairless基因敲除小鼠发生炎性衰老的可能机制
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作者 杜春燕 左培培 +1 位作者 章金涛 朱奎成 《中国老年学杂志》 CAS 北大核心 2023年第18期4476-4479,共4页
目的探讨Hairless基因敲除形成的无毛小鼠发生早期衰老的可能机制。方法分别选用雄性野生型C57/BL6J小鼠和雄性Hairless基因敲除无毛小鼠,每组小鼠为12只,均为6月龄。通过小鼠皮肤形态观察,苏木素-伊红(HE)染色观察皮肤组织病理学特征,... 目的探讨Hairless基因敲除形成的无毛小鼠发生早期衰老的可能机制。方法分别选用雄性野生型C57/BL6J小鼠和雄性Hairless基因敲除无毛小鼠,每组小鼠为12只,均为6月龄。通过小鼠皮肤形态观察,苏木素-伊红(HE)染色观察皮肤组织病理学特征,水迷宫行为学实验和力竭跑步实验分别检测两组学习记忆能力和运动能力的变化,酶联免疫吸附试验(ELISA)检测血清中白细胞介素(IL)-6、IL-1β、肿瘤坏死因子(TNF)-α水平及背部皮肤中超氧化物歧化酶(SOD)和丙二醛(MDA)表达水平,实时荧光定量-聚合酶链反应(qRT-PCR)检测皮肤组织中弹性蛋白原(tropoelastin)和纤维蛋白(fibrillin)-1基因mRNA表达水平。结果与野生型小鼠相比,无毛小鼠皮肤褶皱明显,皮肤组织中有炎性细胞浸润,且胶原纤维基因表达水平显著下调,血清中炎性因子明显升高,其学习记忆能力和力竭运动能力变弱。结论Hairless基因敲除形成的无毛小鼠在皮肤、学习记忆能力和运动能力方面均发生衰退,其机制可能与炎症有关。 展开更多
关键词 HAIRLESS 无毛小鼠 炎性 衰老
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Differences in the Histopathology and Cytokine Expression Pattern between Chronological Aging and Photoaging of Hairless Mice Skin
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作者 Masaaki Sakura Yoichi Chiba +6 位作者 Emi Kamiya Ayako Furukawa Noriko Kawamura Masanao Niwa Minoru Takeuchi Yasushi Enokido Masanori Hosokawa 《Modern Research in Inflammation》 2014年第3期82-89,共8页
Skin photoaging is a complex, multifactorial process resulting in functional and structural changes of the skin, and different phenotypes from chronological skin aging are well-recognized. Ultraviolet (UV)-irradiated ... Skin photoaging is a complex, multifactorial process resulting in functional and structural changes of the skin, and different phenotypes from chronological skin aging are well-recognized. Ultraviolet (UV)-irradiated hairless mice have been used as a skin photoaging animal model. However, differences in morphology and gene expression patterns between UV-induced and chronological skin changes in this mouse model have not been fully elucidated. Here we investigated differences in histopathology and cytokine expression between UV-irradiated and non-irradiated aged hairless mice to clarify the factor(s) that differentiate photoaging from chronological skin aging phenotypes. Eight-week-old HR-1 hairless mice were divided into UV-irradiated (UV-irradiated mice) and non-irradiated (control mice) groups. Irradiation was performed three times per week for 10 weeks. In addition, 30-week-old HR-1 hairless mice were reared until 70 weeks of age without UV irradiation (aged mice). Histopathologies revealed that the flattening of dermal-epidermal junctions and epidermal thickening were observed only in UV-irradiated mice. Decreases in fine elastic fibers just beneath the epidermis, the thickening of elastic fibers in the reticular dermis, and the accumulation of glycosaminoglycans were more prominent in UV-irradiated mice as compared to non-irradiated aged mice. Quantitative PCR analyses revealed that UV-irradiated mice showed an increase in the expression of IFN-γ. In contrast, aged mice exhibited proportional up-regulation of both pro-inflammatory and anti-inflammatory cytokines. The IFN-γ/IL-4 ratio, an indicator for the balance of pro-inflammatory and anti-inflammatory cytokines, was significantly higher in UV-irradiated mice as compared to control and non-irradiated aged mice. An elevated IFN-γ/IL-4 ratio was also observed in aged senescence-accelerated mouse-prone 1 (SAMP1) mice, a spontaneous skin photoaging model we recently reported. Thus, an imbalance between pro-inflammatory and anti-inflammatory cytokines might be a key factor to differentiate photoaged skin from chronologically-aged skin. 展开更多
关键词 Photoaged SKIN Chronologically-Aged SKIN PRO-INFLAMMATORY CYTOKINES Anti-Inflammatory CYTOKINES HAIRLESS Mice
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Two Approaches to the Study of a Controversial Relationship: Cutaneous Photosensitivity and Anti-Ro/SS-A Autoantibodies
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作者 Mariela L. Paz Eliana M. Cela +3 位作者 Alejandro Ferrari Adrián D. Friedrich Juliana Leoni Daniel H. González Maglio 《Open Journal of Rheumatology and Autoimmune Diseases》 2014年第1期1-12,共12页
Background: Autoantibodies (Aabs) are the hallmark of numerous systemic autoimmune pathologies (SAPs), for instance anti-Ro/SS-A Aabs are usually found in Systemic Lupus Erythematosus (SLE) and Sjogren’s Syndrome. Cu... Background: Autoantibodies (Aabs) are the hallmark of numerous systemic autoimmune pathologies (SAPs), for instance anti-Ro/SS-A Aabs are usually found in Systemic Lupus Erythematosus (SLE) and Sjogren’s Syndrome. Cutaneous photosensitivity (CP) is found in most forms and subsets of LE and consists of a skin rash as a result of unusual reaction to sunlight. There are many theories which relate specifically the presence of circulating anti-Ro/SS-A Aabs with the CP phenomenon, though there are several studies which are in disagreement. Results: In this study we analyzed the relationship between CP and anti-Ro Aabs by means of two approaches. The first one included an in vitro model where we evaluated by flow cytometry the binding capacity of affinity-purified Aabs to autoantigens relocalized on apoptotic keratinocyte’s surface. We found that there was no relationship between the binding capacity of serum from 10 selected patients or their corresponding purified anti-Ro52 and anti-Ro60 Aabs, and the presence or absence of CP, neither with the SAPs. The in vivo model consisted of Hairless SKH:1 mice which were induced to produce anti-murine Ro52 and/or Ro60 Aabs and were subsequently irradiated with UVB light. We evaluated the skin histology and also the epidermal production of TNF-α. We found no differences between the groups in neither of the parameters evaluated. Conclusions: These results agree with some studies on the role of the Aabs in CP, considering anti-Ro Aabs not as the only responsible for the manifestation;and disagree with many other authors, who believe in the strong association between these two events. 展开更多
关键词 CUTANEOUS PHOTOSENSITIVITY Purified Anti-Ro/SS-A AUTOANTIBODIES SKH-1 HAIRLESS Mice UVB Irradiation TNF-α
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Jumonji家族的无毛蛋白与毛发缺失
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作者 米洋 张业 《生命的化学》 CAS CSCD 北大核心 2009年第5期669-672,共4页
Jumonji家族中的一个成员hairless基因(Hr)在小鼠和人体内的突变可以导致显著的毛发生长障碍。HR影响的生理过程是出生后的毛发周期(haircycle),而非胚胎期的毛囊形态发生(hairmorphgenesis)。HR与维生素D受体(vitaminDreceptor,VDR)在... Jumonji家族中的一个成员hairless基因(Hr)在小鼠和人体内的突变可以导致显著的毛发生长障碍。HR影响的生理过程是出生后的毛发周期(haircycle),而非胚胎期的毛囊形态发生(hairmorphgenesis)。HR与维生素D受体(vitaminDreceptor,VDR)在体外可以直接相互作用,并对基因转录有抑制作用,提示HR是核受体的转录辅抑制因子(corepressor),转录抑制机制可能是通过组蛋白去乙酰基酶(histonedeacetylase,HDAC)等实现。HR的蛋白质结构和亚细胞定位提示其可能通过其他机制改变染色质的状态从而实现对靶基因的表达调控。 展开更多
关键词 hairless基因 毛发周期 JmjC结构域
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Genome-wide signatures of mammalian skin covering evolution 被引量:1
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作者 Peng Cao Qinlong Dai +9 位作者 Cao Deng Xiang Zhao Shishan Qin Jian Yang Ran Ju Zhiwen Wang Guoqing Lu Xiaodong Gu Zhisong Yang Lifeng Zhu 《Science China(Life Sciences)》 SCIE CAS CSCD 2021年第10期1765-1780,共16页
Animal body coverings provide protection and allow for adaptation to environmental pressures such as heat,ultraviolet radiation,water loss,and mechanical forces.Here,using a comparative genomics analysis of 39 mammal ... Animal body coverings provide protection and allow for adaptation to environmental pressures such as heat,ultraviolet radiation,water loss,and mechanical forces.Here,using a comparative genomics analysis of 39 mammal species spanning three skin covering types(hairless,scaly and spiny),we found some genes(e.g.,UVRAG,POLH,and XPC)involved in skin inflammation,skin innate immunity,and ultraviolet radiation damage repair were under selection in hairless ocean mammals(e.g.,whales and manatees).These signatures might be associated with a high risk of skin diseases from pathogens and ultraviolet radiation.Moreover,the genomes from three spiny mammal species shared convergent genomic regions(EPHB2,EPHA4,and NIN)and unique positively selected genes(FZD6,INVS,and CDC42)involved in skin cell polarity,which might be related to the development of spines.In scaly mammals,the shared convergent genomic regions(e.g.,FREM2)were associated with the integrity of the skin epithelium and epidermal adhesion.This study identifies potential convergent genomic features among distantly related mammals with the same skin covering type. 展开更多
关键词 comparative genomics skin coverings spiny mammals hairless mammals scaly mammals convergent evolution
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Autozygosity Mapping by Genome-wide Single Nucleotide Polymorphism Array Identifies a Novel Homozygous HR Mutation in a Consanguineous Family with Universal Hereditary Hair Loss 被引量:1
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作者 Sirous Zeinali Leila Youssefian +4 位作者 Hassan Vahidnezhad Amir Hossein Saeidian Soheila Sotoudeh Hamideh Bagherian Jouni Uitto 《International Journal of Dermatology and Venereology》 2021年第2期82-85,共4页
Objective:Isolated hereditary hypotrichosis is caused by mutations in as many as 11 different genes.The conventional mutation detection strategy consists of sequencing of individual candidate genes separately,a time c... Objective:Isolated hereditary hypotrichosis is caused by mutations in as many as 11 different genes.The conventional mutation detection strategy consists of sequencing of individual candidate genes separately,a time consuming and costly approach.In this study,we perform genome-wide single nucleotide polymorphism(SNP)array to identify candidate genes of hereditary hypotrichosis.Methods:A consanguineous family with two patients with hereditary hypotrichosis was enrolled,and autozygosity mapping by genome-wide SNP array was utilized to identify candidate genes.Results:Autozygosity mapping delineated runs of homozygosity,and alignment of the 11 genes identified the hairless(HR)gene as the candidate gene.Nucleotide sequencing revealed a novel homozygous mutation c.381delT,p.Ser127ArgfsTer40.Conclusion:This study illustrates how autozygosity mapping by a high-density SNP array streamlines mutation detection in heritable skin diseases. 展开更多
关键词 familial hypotrichosis hair loss homozygosity mapping mutation detection hairless gene mutations
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Cloning and characterization of a bursicon-regulated gene Su(H) in the house fly Musca domestica
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作者 Songjie Wang Shiheng An +1 位作者 David Stanley Qisheng Song 《Insect Science》 SCIE CAS CSCD 2009年第3期207-217,共11页
Bursicon is a neuropeptide that regulates cuticle sclerotization (hardening and tanning) in insect via a G-protein coupled receptor. However, the signal transduction pathway downstream of the G-protein coupled recep... Bursicon is a neuropeptide that regulates cuticle sclerotization (hardening and tanning) in insect via a G-protein coupled receptor. However, the signal transduction pathway downstream of the G-protein coupled receptor is currently not well known. In our recent microarray analysis, we identified a panel of genes regulated by bursicon in Drosophila. One of the genes, Suppressor of Hairless, or Su(H), has drawn our attention because its product acts down-stream of the bursicon receptor. In the present study, we cloned the Drosophila homolog, mdSu(H), from the house fly Musca domestica using 3' and 5' rapid amplification of complementary DNA ends. Real-time polymerase chain reaction analysis revealed that the level ofmdSu(H) transcript is up-regulated by ~3-fold 1 h after recombinant bursicon injection, which correlates well with the cuticle sclerotization process observed in the recombinant bursicon-injected flies. We infer that Su(H) is an essential gene involved in the insect cuticle sclerotization process. 展开更多
关键词 cuticle sclcrotization gene regulation Musca domestica Notch pathway r-bursicon suppressor of hairless
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