Host-pathogen interactions are highly complex,involving large dynamic changes in gene expression during infection. These interactions are fundamental to understanding anti-infection immunity of hosts, as well as the p...Host-pathogen interactions are highly complex,involving large dynamic changes in gene expression during infection. These interactions are fundamental to understanding anti-infection immunity of hosts, as well as the pathogenesis of pathogens. For bacterial pathogens interacting with animal hosts, timeresolved dual RNA-seq of infected tissue is difficult to perform due to low pathogen load in infected tissue. In this study, an acute infection model of Larimichthys crocea infected by Pseudomonas plecoglossicida was established. The spleens of infected fish exhibited typical symptoms, with a maximum bacterial load at two days post-injection(dpi). Time-resolved dual RNA-seq of infected spleens was successfully applied to study hostpathogen interactions between L. crocea and P.plecoglossicida. The spleens of infected L. crocea were subjected to dual RNA-seq, and transcriptome data were compared with those of noninfected spleens or in vitro cultured bacteria. Results showed that pathogen-host interactions were highly dynamically regulated, with corresponding fluctuations in host and pathogen transcriptomes during infection. The expression levels of many immunogenes involved in cytokine-cytokine receptor,Toll-like receptor signaling, and other immunerelated pathways were significantly up-regulated during the infection period. Furthermore, metabolic processes and the use of oxygen in L. crocea were strongly affected by P. plecoglossicida infection. The WGCNA results showed that the metabolic process was strongly related to the entire immune process.For P. plecoglossicida, the expression levels of motility-related genes and flagellum assemblyrelated genes were significantly up-regulated. The results of this study may help to elucidate the interactions between L. crocea and P.plecoglossicida.展开更多
Helicobacter pylori(H. pylori) is a model organism for understanding host-pathogen interactions and infection-mediated carcinogenesis. Gastric cancer and H. pylori colonization indicates the strong correlation. The pr...Helicobacter pylori(H. pylori) is a model organism for understanding host-pathogen interactions and infection-mediated carcinogenesis. Gastric cancer and H. pylori colonization indicates the strong correlation. The progression and exacerbation of H. pylori infection are influenced by some factors of pathogen and host. Several virulence factors involved in the proper adherence and attenuation of immune defense to contribute the risk of emerging gastric cancer, therefore analysis of them is very important. H. pylori also modulates inflammatory and autophagy process to intensify its pathogenicity. From the host regard, different genetic factors particularly affect the development of gastric cancer. Indeed, epigenetic modifications, Micro RNA and long non-coding RNA received more attention. Generally, various factors related to pathogen and host that modulate gastric cancer development in response to H. pylori need more attention due to develop an efficacious therapeutic intervention. Therefore, this paper will present a brief overview of host-pathogen interaction especially emphases on bacterial virulence factors, interruption of host cellular signaling, the role of epigenetic modifications and non-coding RNAs.展开更多
Active host-pathogen interactions take place during infection of human immunodeficiency virus type 1 (HIV-1). Outcomes of these interactions determine the efficiency of viral infection and subsequent disease progressi...Active host-pathogen interactions take place during infection of human immunodeficiency virus type 1 (HIV-1). Outcomes of these interactions determine the efficiency of viral infection and subsequent disease progression. HIV- infected cells respond to viral invasion with various defensive strategies such as innate, cellular and humoral immune antiviral mechanisms. On the other hand, the virus has also developed various offensive tactics to suppress these host cellular responses. Among many of the viral offensive strategies, HIV-1 viral auxiliary proteins (Tat, Rev, Nef, Vif, Vpr and Vpu) play important roles in the host-pathogen interaction and thus have significant impacts on the outcome of HIV infection. One of the best examples is the interaction of Vif with a host cytidine deaminase APOBEC3G. Although specific roles of other auxiliary proteins are not as well described as Vif-APOBEC3G interaction, it is the goal of this brief review to summarize some of the preliminary findings with the hope to stimulate further discussion and investiga- tion in this exhilarating area of research.展开更多
The prognosis of infectious diseases is determined by host-pathogen interactions.Control of pathogens has been the central dogma of treating infectious diseases in modern medicine,but the pathogen-directed medicine is...The prognosis of infectious diseases is determined by host-pathogen interactions.Control of pathogens has been the central dogma of treating infectious diseases in modern medicine,but the pathogen-directed medicine is facing significant challenges,including a lack of effective antimicrobials for newly emerging pathogens,pathogen drug resistance,and drug side effects.Here,a mathematic equation(ter-med equation of host-pathogen interactions,HPI-Equation)is developed to dissect the key variables of hostpathogen interactions.It shows that control of pathogens does not necessarily lead to host recov-ery.Instead,a combination of promoting a host’s power of self-healing and balancing immune responses provides the best benefit for host.Moreover,the HPI-Equation elucidates the scientific basis of traditional Chinese medicine(TCM),a host-based medicine that treats infectious diseases by promot-ing self-healing power and balancing immune responses.The importance of self-healing power eluci-dated in the HPIEquation is confirmed by recent studies that the tolerance mechanism,which is discovered in plants and animals and conceptually similar to self-healing power,improves host survival without directly attacking pathogens.In summary,the HPI-Equation describes host-pathogen interac-tions with mathematical logic and precision;it translates the ancient wisdoms of TCM into apprehen-sible modern sciences and opens a new venue for integrating TCM and modern medicine for a future medicine.展开更多
The filamentous fungus Beauveria bassiana is a natural pathogen of the greater wax moth Galleria mellonella.Infection with this fungus triggered systemic immune response in G.mellonella;nevertheless,the infection was ...The filamentous fungus Beauveria bassiana is a natural pathogen of the greater wax moth Galleria mellonella.Infection with this fungus triggered systemic immune response in G.mellonella;nevertheless,the infection was lethal if spores entered the insect hemocel.We observed melanin deposition in the insect cuticle and walls of air bags,while the invading fungus interrupted tssue continuity.We have shown colonization of muscles,air bags,and finally colonization and complete destruction of the fat body-the main organ responsible for the synthesis of defense molecules in response to infection.This destruction was probably not caused by simple fungal growth,because the fat body was not destroyed during colonization with a human opportunistic pathogen Candida albicans.This may mean that the infecting fungus is able to destroy actively the insect's fat body as part of its virulence mechanism.Finally,we were unable to reduce the extremely high virulence of B.bassiana against G.mellonella by priming of larvae with thermally inactivated fungal spores.展开更多
目的探讨不同去宿主方法对血流感染样本中病原微生物检测的影响。方法以浓度分别为10^(5),10^(3),10^(2)和10CFU/ml的模拟金黄色葡萄球菌血流感染样本为研究对象,将检测分为全血组和血浆组,使用宏基因组测序(metagenomic next generatio...目的探讨不同去宿主方法对血流感染样本中病原微生物检测的影响。方法以浓度分别为10^(5),10^(3),10^(2)和10CFU/ml的模拟金黄色葡萄球菌血流感染样本为研究对象,将检测分为全血组和血浆组,使用宏基因组测序(metagenomic next generation sequencing,mNGS)比较Saponin法、Wash法、CD45法和MolYsis法四种预处理方法的病原微生物reads检出数和占比,以评估不同方法的去宿主效率。结果血流感染病原微生物初始浓度在10^(3)CFU/ml以下的微生物检出占比小于0.15%。四种去宿主方法中,Saponin法reads检出数最多,病原微生物检出占比最高,血浆组检测结果占比可提升至18%以上;Wash法及CD45法相比直接提取法病原微生物reads检出数均未显著增加,MolYsis法的reads检出数水平有明显增高。血浆组病原微生物reads检出数多于全血组,去宿主方法可明显提高病原微生物的丰度。结论对比四种去宿主方法的mNGS检测结果,Saponin法可明显去除宿主核酸,提高病原微生物的reads检出数,尤其血浆组去宿主效果最好。展开更多
基金the National Natural Science Foundation of China(31672694,31972836)Fujian Provincial Special Fund for Marine and Fishery Protection and Development(MCZ[2019]062)。
文摘Host-pathogen interactions are highly complex,involving large dynamic changes in gene expression during infection. These interactions are fundamental to understanding anti-infection immunity of hosts, as well as the pathogenesis of pathogens. For bacterial pathogens interacting with animal hosts, timeresolved dual RNA-seq of infected tissue is difficult to perform due to low pathogen load in infected tissue. In this study, an acute infection model of Larimichthys crocea infected by Pseudomonas plecoglossicida was established. The spleens of infected fish exhibited typical symptoms, with a maximum bacterial load at two days post-injection(dpi). Time-resolved dual RNA-seq of infected spleens was successfully applied to study hostpathogen interactions between L. crocea and P.plecoglossicida. The spleens of infected L. crocea were subjected to dual RNA-seq, and transcriptome data were compared with those of noninfected spleens or in vitro cultured bacteria. Results showed that pathogen-host interactions were highly dynamically regulated, with corresponding fluctuations in host and pathogen transcriptomes during infection. The expression levels of many immunogenes involved in cytokine-cytokine receptor,Toll-like receptor signaling, and other immunerelated pathways were significantly up-regulated during the infection period. Furthermore, metabolic processes and the use of oxygen in L. crocea were strongly affected by P. plecoglossicida infection. The WGCNA results showed that the metabolic process was strongly related to the entire immune process.For P. plecoglossicida, the expression levels of motility-related genes and flagellum assemblyrelated genes were significantly up-regulated. The results of this study may help to elucidate the interactions between L. crocea and P.plecoglossicida.
文摘Helicobacter pylori(H. pylori) is a model organism for understanding host-pathogen interactions and infection-mediated carcinogenesis. Gastric cancer and H. pylori colonization indicates the strong correlation. The progression and exacerbation of H. pylori infection are influenced by some factors of pathogen and host. Several virulence factors involved in the proper adherence and attenuation of immune defense to contribute the risk of emerging gastric cancer, therefore analysis of them is very important. H. pylori also modulates inflammatory and autophagy process to intensify its pathogenicity. From the host regard, different genetic factors particularly affect the development of gastric cancer. Indeed, epigenetic modifications, Micro RNA and long non-coding RNA received more attention. Generally, various factors related to pathogen and host that modulate gastric cancer development in response to H. pylori need more attention due to develop an efficacious therapeutic intervention. Therefore, this paper will present a brief overview of host-pathogen interaction especially emphases on bacterial virulence factors, interruption of host cellular signaling, the role of epigenetic modifications and non-coding RNAs.
文摘Active host-pathogen interactions take place during infection of human immunodeficiency virus type 1 (HIV-1). Outcomes of these interactions determine the efficiency of viral infection and subsequent disease progression. HIV- infected cells respond to viral invasion with various defensive strategies such as innate, cellular and humoral immune antiviral mechanisms. On the other hand, the virus has also developed various offensive tactics to suppress these host cellular responses. Among many of the viral offensive strategies, HIV-1 viral auxiliary proteins (Tat, Rev, Nef, Vif, Vpr and Vpu) play important roles in the host-pathogen interaction and thus have significant impacts on the outcome of HIV infection. One of the best examples is the interaction of Vif with a host cytidine deaminase APOBEC3G. Although specific roles of other auxiliary proteins are not as well described as Vif-APOBEC3G interaction, it is the goal of this brief review to summarize some of the preliminary findings with the hope to stimulate further discussion and investiga- tion in this exhilarating area of research.
文摘The prognosis of infectious diseases is determined by host-pathogen interactions.Control of pathogens has been the central dogma of treating infectious diseases in modern medicine,but the pathogen-directed medicine is facing significant challenges,including a lack of effective antimicrobials for newly emerging pathogens,pathogen drug resistance,and drug side effects.Here,a mathematic equation(ter-med equation of host-pathogen interactions,HPI-Equation)is developed to dissect the key variables of hostpathogen interactions.It shows that control of pathogens does not necessarily lead to host recov-ery.Instead,a combination of promoting a host’s power of self-healing and balancing immune responses provides the best benefit for host.Moreover,the HPI-Equation elucidates the scientific basis of traditional Chinese medicine(TCM),a host-based medicine that treats infectious diseases by promot-ing self-healing power and balancing immune responses.The importance of self-healing power eluci-dated in the HPIEquation is confirmed by recent studies that the tolerance mechanism,which is discovered in plants and animals and conceptually similar to self-healing power,improves host survival without directly attacking pathogens.In summary,the HPI-Equation describes host-pathogen interac-tions with mathematical logic and precision;it translates the ancient wisdoms of TCM into apprehen-sible modern sciences and opens a new venue for integrating TCM and modern medicine for a future medicine.
文摘The filamentous fungus Beauveria bassiana is a natural pathogen of the greater wax moth Galleria mellonella.Infection with this fungus triggered systemic immune response in G.mellonella;nevertheless,the infection was lethal if spores entered the insect hemocel.We observed melanin deposition in the insect cuticle and walls of air bags,while the invading fungus interrupted tssue continuity.We have shown colonization of muscles,air bags,and finally colonization and complete destruction of the fat body-the main organ responsible for the synthesis of defense molecules in response to infection.This destruction was probably not caused by simple fungal growth,because the fat body was not destroyed during colonization with a human opportunistic pathogen Candida albicans.This may mean that the infecting fungus is able to destroy actively the insect's fat body as part of its virulence mechanism.Finally,we were unable to reduce the extremely high virulence of B.bassiana against G.mellonella by priming of larvae with thermally inactivated fungal spores.
基金supported by the National Key Research and Development Program of China(2022YFA1303100,2022YFA0806800)the National Natural Science Foundation of China(92254302,92153302)+2 种基金Plans for Major Provincial Science&Technology Projects of Anhui Province(202303a0702003)the Ministry of Education Innovative Team(IRT_17R102)the Fundamental Research Funds for the Central Universities(WK2070000194).
文摘目的探讨不同去宿主方法对血流感染样本中病原微生物检测的影响。方法以浓度分别为10^(5),10^(3),10^(2)和10CFU/ml的模拟金黄色葡萄球菌血流感染样本为研究对象,将检测分为全血组和血浆组,使用宏基因组测序(metagenomic next generation sequencing,mNGS)比较Saponin法、Wash法、CD45法和MolYsis法四种预处理方法的病原微生物reads检出数和占比,以评估不同方法的去宿主效率。结果血流感染病原微生物初始浓度在10^(3)CFU/ml以下的微生物检出占比小于0.15%。四种去宿主方法中,Saponin法reads检出数最多,病原微生物检出占比最高,血浆组检测结果占比可提升至18%以上;Wash法及CD45法相比直接提取法病原微生物reads检出数均未显著增加,MolYsis法的reads检出数水平有明显增高。血浆组病原微生物reads检出数多于全血组,去宿主方法可明显提高病原微生物的丰度。结论对比四种去宿主方法的mNGS检测结果,Saponin法可明显去除宿主核酸,提高病原微生物的reads检出数,尤其血浆组去宿主效果最好。
