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A 16-bit 18-MSPS flash-assisted SAR ADC with hybrid synchronous and asynchronous control logic 被引量:1
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作者 Junyao Ji Xinao Ji +5 位作者 Ziyu Zhou Zhichao Dai Xuhui Chen Jie Zhang Zheng Jiang Hong Zhang 《Journal of Semiconductors》 EI CAS CSCD 2024年第6期3-12,共10页
This paper presents a 16-bit,18-MSPS(million samples per second)flash-assisted successive-approximation-register(SAR)analog-to-digital converter(ADC)utilizing hybrid synchronous and asynchronous(HYSAS)timing control l... This paper presents a 16-bit,18-MSPS(million samples per second)flash-assisted successive-approximation-register(SAR)analog-to-digital converter(ADC)utilizing hybrid synchronous and asynchronous(HYSAS)timing control logic based on an on-chip delay-locked loop(DLL).The HYSAS scheme can provide a longer settling time for the capacitive digital-to-analog converter(CDAC)than the synchronous and asynchronous SAR ADC.Therefore,the issue of incomplete settling or ringing in the DAC voltage for cases of either on-chip or off-chip reference voltage can be solved to a large extent.In addition,the fore-ground calibration of the CDAC’s mismatch is performed with a finite-impulse-response bandpass filter(FIR-BPF)based least-mean-square(LMS)algorithm in an off-chip FPGA(field programmable gate array).Fabricated in 40-nm CMOS process,the proto-type ADC achieves 94.02-dB spurious-free dynamic range(SFDR),and 75.98-dB signal-to-noise-and-distortion ratio(SNDR)for a 2.88-MHz input under 18-MSPS sampling rate. 展开更多
关键词 SAR ADC control logic reference ringing DAC incomplete settling
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Rock mass quality prediction on tunnel faces with incomplete multi-source dataset via tree-augmented naive Bayesian network
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作者 Hongwei Huang Chen Wu +3 位作者 Mingliang Zhou Jiayao Chen Tianze Han Le Zhang 《International Journal of Mining Science and Technology》 SCIE EI CAS CSCD 2024年第3期323-337,共15页
Rock mass quality serves as a vital index for predicting the stability and safety status of rock tunnel faces.In tunneling practice,the rock mass quality is often assessed via a combination of qualitative and quantita... Rock mass quality serves as a vital index for predicting the stability and safety status of rock tunnel faces.In tunneling practice,the rock mass quality is often assessed via a combination of qualitative and quantitative parameters.However,due to the harsh on-site construction conditions,it is rather difficult to obtain some of the evaluation parameters which are essential for the rock mass quality prediction.In this study,a novel improved Swin Transformer is proposed to detect,segment,and quantify rock mass characteristic parameters such as water leakage,fractures,weak interlayers.The site experiment results demonstrate that the improved Swin Transformer achieves optimal segmentation results and achieving accuracies of 92%,81%,and 86%for water leakage,fractures,and weak interlayers,respectively.A multisource rock tunnel face characteristic(RTFC)dataset includes 11 parameters for predicting rock mass quality is established.Considering the limitations in predictive performance of incomplete evaluation parameters exist in this dataset,a novel tree-augmented naive Bayesian network(BN)is proposed to address the challenge of the incomplete dataset and achieved a prediction accuracy of 88%.In comparison with other commonly used Machine Learning models the proposed BN-based approach proved an improved performance on predicting the rock mass quality with the incomplete dataset.By utilizing the established BN,a further sensitivity analysis is conducted to quantitatively evaluate the importance of the various parameters,results indicate that the rock strength and fractures parameter exert the most significant influence on rock mass quality. 展开更多
关键词 Rock mass quality Tunnel faces Incomplete multi-source dataset Improved Swin Transformer Bayesian networks
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Data-Driven Learning Control Algorithms for Unachievable Tracking Problems
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作者 Zeyi Zhang Hao Jiang +1 位作者 Dong Shen Samer S.Saab 《IEEE/CAA Journal of Automatica Sinica》 SCIE EI CSCD 2024年第1期205-218,共14页
For unachievable tracking problems, where the system output cannot precisely track a given reference, achieving the best possible approximation for the reference trajectory becomes the objective. This study aims to in... For unachievable tracking problems, where the system output cannot precisely track a given reference, achieving the best possible approximation for the reference trajectory becomes the objective. This study aims to investigate solutions using the Ptype learning control scheme. Initially, we demonstrate the necessity of gradient information for achieving the best approximation.Subsequently, we propose an input-output-driven learning gain design to handle the imprecise gradients of a class of uncertain systems. However, it is discovered that the desired performance may not be attainable when faced with incomplete information.To address this issue, an extended iterative learning control scheme is introduced. In this scheme, the tracking errors are modified through output data sampling, which incorporates lowmemory footprints and offers flexibility in learning gain design.The input sequence is shown to converge towards the desired input, resulting in an output that is closest to the given reference in the least square sense. Numerical simulations are provided to validate the theoretical findings. 展开更多
关键词 Data-driven algorithms incomplete information iterative learning control gradient information unachievable problems
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Ab initio density response and local field factor of warm dense hydrogen
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作者 Tobias Dornheim Sebastian Schwalbe +3 位作者 Panagiotis Tolias Maximilian P.Böhme Zhandos A.Moldabekov Jan Vorberger 《Matter and Radiation at Extremes》 SCIE EI CSCD 2024年第5期48-67,共20页
We present quasi-exact ab initio path integral Monte Carlo(PIMC)results for the partial static density responses and local field factors of hydrogen in the warm dense matter regime,from solid density conditions to the... We present quasi-exact ab initio path integral Monte Carlo(PIMC)results for the partial static density responses and local field factors of hydrogen in the warm dense matter regime,from solid density conditions to the strongly compressed case.The full dynamic treatment of electrons and protons on the same footing allows us to rigorously quantify both electronic and ionic exchange–correlation effects in the system,and to compare the results with those of earlier incomplete models such as the archetypal uniform electron gas or electrons in a fixed ion snapshot potential that do not take into account the interplay between the two constituents.The full electronic density response is highly sensitive to electronic localization around the ions,and our results constitute unambiguous predictions for upcoming X-ray Thomson scattering experiments with hydrogen jets and fusion plasmas.All PIMC results are made freely available and can be used directly for a gamut of applications,including inertial confinement fusion calculations and the modeling of dense astrophysical objects.Moreover,they constitute invaluable benchmark data for approximate but computationally less demanding approaches such as density functional theory or PIMC within the fixed-node approximation. 展开更多
关键词 LOCAL INCOMPLETE rigorous
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Influence of Incomplete Soil Plugs on Bearing Capacities of Bucket Foundations in Clay
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作者 LI Hui-shan LIU Run +1 位作者 YANG Xu LIAN Ji-jian 《China Ocean Engineering》 SCIE EI CSCD 2024年第1期144-155,共12页
Due to the uneven seabed and heaving of soil during pumping,incomplete soil plugs may occur during the installation of bucket foundations,and the impacts on the bearing capacities of bucket foundations need to be eval... Due to the uneven seabed and heaving of soil during pumping,incomplete soil plugs may occur during the installation of bucket foundations,and the impacts on the bearing capacities of bucket foundations need to be evaluated.In this paper,the contact ratio(the ratio of the top diameter of the soil plug to the diameter of the bucket)and the soil plug ratio(the ratio of the soil heave height to the skirt height)are defined to describe the shape and size of the incomplete soil plug.Then,finite element models are established to investigate the bearing capacities of bucket foundations with incomplete soil plugs and the influences of the contact ratios,and the soil plug ratios on the bearing capacities are analyzed.The results show that the vertical bearing capacity of bucket foundations in homogeneous soil continuously improves with the increase of the contact ratio.However,in normally consolidated soil,the vertical bearing capacity barely changes when the contact ratio is smaller than 0.75,while the bearing capacity suddenly increases when the contact ratio increases to 1 due to the change of failure mode.The contact ratio hardly affects the horizontal bearing capacity of bucket foundations.Moreover,the moment bearing capacity improves with the increase of the contact ratio for small aspect ratios,but hardly varies with increasing contact ratio for aspect ratios larger than 0.5.Consequently,the reduction coefficient method is proposed based on this analysis to calculate the bearing capacities of bucket foundations considering the influence of incomplete soil plugs.The comparison results show that the proposed reduction coefficient method can be used to evaluate the influences of incomplete soil plug on the bearing capacities of bucket foundations. 展开更多
关键词 bucket foundation incomplete soil plug uniaxial bearing capacity contact ratio soil plug ratio
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Leveraging Uncertainty for Depth-Aware Hierarchical Text Classification
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作者 Zixuan Wu Ye Wang +2 位作者 Lifeng Shen Feng Hu Hong Yu 《Computers, Materials & Continua》 SCIE EI 2024年第9期4111-4127,共17页
Hierarchical Text Classification(HTC)aims to match text to hierarchical labels.Existing methods overlook two critical issues:first,some texts cannot be fully matched to leaf node labels and need to be classified to th... Hierarchical Text Classification(HTC)aims to match text to hierarchical labels.Existing methods overlook two critical issues:first,some texts cannot be fully matched to leaf node labels and need to be classified to the correct parent node instead of treating leaf nodes as the final classification target.Second,error propagation occurs when a misclassification at a parent node propagates down the hierarchy,ultimately leading to inaccurate predictions at the leaf nodes.To address these limitations,we propose an uncertainty-guided HTC depth-aware model called DepthMatch.Specifically,we design an early stopping strategy with uncertainty to identify incomplete matching between text and labels,classifying them into the corresponding parent node labels.This approach allows us to dynamically determine the classification depth by leveraging evidence to quantify and accumulate uncertainty.Experimental results show that the proposed DepthMatch outperforms recent strong baselines on four commonly used public datasets:WOS(Web of Science),RCV1-V2(Reuters Corpus Volume I),AAPD(Arxiv Academic Paper Dataset),and BGC.Notably,on the BGC dataset,it improvesMicro-F1 andMacro-F1 scores by at least 1.09%and 1.74%,respectively. 展开更多
关键词 Hierarchical text classification incomplete text-label matching UNCERTAINTY depth-aware early stopping strategy
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Value Iteration-Based Cooperative Adaptive Optimal Control for Multi-Player Differential Games With Incomplete Information
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作者 Yun Zhang Lulu Zhang Yunze Cai 《IEEE/CAA Journal of Automatica Sinica》 SCIE EI CSCD 2024年第3期690-697,共8页
This paper presents a novel cooperative value iteration(VI)-based adaptive dynamic programming method for multi-player differential game models with a convergence proof.The players are divided into two groups in the l... This paper presents a novel cooperative value iteration(VI)-based adaptive dynamic programming method for multi-player differential game models with a convergence proof.The players are divided into two groups in the learning process and adapt their policies sequentially.Our method removes the dependence of admissible initial policies,which is one of the main drawbacks of the PI-based frameworks.Furthermore,this algorithm enables the players to adapt their control policies without full knowledge of others’ system parameters or control laws.The efficacy of our method is illustrated by three examples. 展开更多
关键词 Adaptive dynamic programming incomplete information multi-player differential game value iteration
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Reliability-BasedModel for Incomplete Preventive ReplacementMaintenance of Photovoltaic Power Systems
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作者 Wei Chen Ming Li +2 位作者 Tingting Pei Cunyu Sun Huan Lei 《Energy Engineering》 EI 2024年第1期125-144,共20页
At present,the operation and maintenance of photovoltaic power generation systems mainly comprise regular maintenance,breakdown maintenance,and condition-based maintenance,which is very likely to lead to over-or under... At present,the operation and maintenance of photovoltaic power generation systems mainly comprise regular maintenance,breakdown maintenance,and condition-based maintenance,which is very likely to lead to over-or under-repair of equipment.Therefore,a preventive maintenance and replacement strategy for PV power generation systems based on reliability as a constraint is proposed.First,a hybrid failure function with a decreasing service age factor and an increasing failure rate factor is introduced to describe the deterioration of PV power generation equipment,and the equipment is replaced when its reliability drops to the replacement threshold in the last cycle.Then,based on the reliability as a constraint,the average maintenance cost and availability of the equipment are considered,and the non-periodic incomplete maintenance model of the PV power generation system is established to obtain the optimal number of repairs,each maintenance cycle and the replacement cycle of the PV power generation system components.Next,the inverter of a PV power plant is used as a research object.The model in this paper is compared and analyzed with the equal cycle maintenance model without considering reliability and the maintenance model without considering the equipment replacement threshold,Through model comparison,when the optimal maintenance strategy is(0.80,4),the average maintenance cost of this paper’s model are decreased by 20.3%and 5.54%and the availability is increased by 0.2395% and 0.0337%,respectively,compared with the equal-cycle maintenance model without considering the reliability constraint and the maintenance model without considering the equipment replacement threshold.Therefore,this maintenance model can ensure the high reliability of PV plant operation while increasing the equipment availability to improve the system economy. 展开更多
关键词 RELIABILITY photovoltaic power system average maintenance cost AVAILABILITY incomplete preventive maintenance hybrid failure rate
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Pharmacodynamic Experiment of Dachengqi Decoction and Separated Decoction on Incomplete Intestinal Obstruction in Rats
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作者 Jiangcun WEI Xiumei MA +5 位作者 Bing QING Meiyan QIU Qingmei DENG Hong LEI Zengyan YANG Zujie QIN 《Medicinal Plant》 2024年第4期107-110,共4页
[Objectives]To investigate the effect and mechanism of Dachengqi Decoction and separated decoction on incomplete intestinal obstruction in rats.[Methods]80 healthy SD rats were selected to establish incomplete intesti... [Objectives]To investigate the effect and mechanism of Dachengqi Decoction and separated decoction on incomplete intestinal obstruction in rats.[Methods]80 healthy SD rats were selected to establish incomplete intestinal obstruction model by silk ligation.The dosage was 20 mL/kg for 3 d,and the damage index of ileocecal mucosa was analyzed;the morphology of ileocecal mucosa was observed by HE staining;the serum levels of IL-1α,IL-1β,IL-6,IL-18,Ach,NO,ET,IL-1,TNF-αand ultra-micro Na+-K+-ATPase were detected by ELISA.[Results]Compared with the model group,the mucosal damage index of Dachengqi Decoction and each separated decoction group decreased significantly(P<0.05);compared with the normal group and sham operation group,the serum level of IL-1,IL-6,TNF-αand other factors in the model group increased significantly(P<0.05);compared with the model group,the serum IL-1,IL-6 and TNF-αsecretion levels of rats in Dachengqi Decoction group and separated decoction group decreased(P<0.01).[Conclusions]Dachengqi Decoction and each separated decoction can effectively improve intestinal tissue pathological damage in the incomplete intestinal obstruction model rats,and reduce the inflammatory reaction in the rat body. 展开更多
关键词 Dachengqi Decoction Separated decoction Incomplete intestinal obstruction Inflammatory factor
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China Seeks to Grab Opportunities Brought about by the Low-Altitude Economy
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作者 Lily Wang 《China's Foreign Trade》 2024年第3期50-51,共2页
Since the inclusion of the low-altitude economy in the government work report during the National People’s Congress and the Chinese People’s Political Consultative Conference in March,many cities have sought to ente... Since the inclusion of the low-altitude economy in the government work report during the National People’s Congress and the Chinese People’s Political Consultative Conference in March,many cities have sought to enter this area first to seize the benefits of the low-altitude economy.According to incomplete statistics,17 provinces(municipalities,autonomous regions)in China have currently written the low-altitude economy into their 2024 government work report.In addition,cities such as Shenzhen,Guangzhou,Chengdu,Suzhou,Zhuhai,and Ganzhou have also included the low-altitude economy in their government work reports.More than 20 provincial and municipal governments,represented by Shenzhen,Hefei,Guangzhou and Chengdu,have introduced also policies to support the development of the low-altitude economy and its business ecosystem. 展开更多
关键词 ALTITUDE INCOMPLETE autonomous
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Legendre-Jacobi’s Elliptic Integrals Shed Light on the Luminosity Distance in Cosmology
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作者 Alessandro Trinchera 《Journal of High Energy Physics, Gravitation and Cosmology》 CAS 2024年第3期930-957,共28页
This article concerns the integral related to the transverse comoving distance and, in turn, to the luminosity distance both in the standard non-flat and flat cosmology. The purpose is to determine a straightforward m... This article concerns the integral related to the transverse comoving distance and, in turn, to the luminosity distance both in the standard non-flat and flat cosmology. The purpose is to determine a straightforward mathematical formulation for the luminosity distance as function of the transverse comoving distance for all cosmology cases with a non-zero cosmological constant by adopting a different mindset. The applied method deals with incomplete elliptical integrals of the first kind associated with the polynomial roots admitted in the comoving distance integral according to the scientific literature. The outcome shows that the luminosity distance can be obtained by the combination of an analytical solution followed by a numerical integration in order to account for the redshift. This solution is solely compared to the current Gaussian quadrature method used as basic recognized algorithm in standard cosmology. 展开更多
关键词 COSMOLOGY Distance Luminosity Transverse Comoving Distance Incomplete Elliptic Integrals
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Disease networks. Uncovering disease-disease relationships through the incomplete interactome
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作者 Jorg Menche 《四川生理科学杂志》 2024年第1期199-199,共1页
According to the disease module hypothesis,the cellular components associated with a disease segregate in the same neighborhood of the human interactome,the map of biologically relevant molecular interactions.Yet,give... According to the disease module hypothesis,the cellular components associated with a disease segregate in the same neighborhood of the human interactome,the map of biologically relevant molecular interactions.Yet,given the incompleteness of the interactome and the limited knowledge of disease-associated genes,it is not obvious if the available data have sufficient coverage to map out modules associated with each disease. 展开更多
关键词 INCOMPLETE interactions. networks.
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Cytoplasmic DNA: sources, sensing, and role in aging and disease
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作者 Karl N Miller 《四川生理科学杂志》 2024年第1期89-89,共1页
Endogenous cytoplasmic DNA(cytoDNA)species are emerging as key mediators of inflammation in diverse physiological and pathological contexts.Although the role of endogenous cytoDNA in innate immune activation is well e... Endogenous cytoplasmic DNA(cytoDNA)species are emerging as key mediators of inflammation in diverse physiological and pathological contexts.Although the role of endogenous cytoDNA in innate immune activation is well established,the cytoDNA species themselves are often poorly characterized and difficult to distinguish,and their mechanisms of formation,scope of function and contribution to disease are incompletely understood. 展开更多
关键词 ENDOGENOUS INFLAMMATION INCOMPLETE
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Disease networks. Uncovering disease-disease relationships through the incomplete interactome
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作者 Jörg Menche 《四川生理科学杂志》 2024年第4期772-772,共1页
According to the disease module hypothesis,the cellular components associated with a disease segregate in the same neighborhood of the human interactome,the map of biologically relevant molecular interactions.Yet,give... According to the disease module hypothesis,the cellular components associated with a disease segregate in the same neighborhood of the human interactome,the map of biologically relevant molecular interactions.Yet,given the incompleteness of the interactome and the limited knowledge of disease-associated genes,it is not obvious if the available data have sufficient coverage to map out modules associated with each disease.Here we derive mathematical conditions for the identifiability of disease modules and show that the network-based location of each disease module determines its pathobiological relationship to other diseases.For example,diseases with overlapping network modules show significant coexpression patterns,symptom similarity,and comorbidity,whereas diseases residing in separated network neighborhoods are phenotypically distinct.These tools represent an interactome-based platform to predict molecular commonalities between phenotypically related diseases,even if they do not share primary disease genes. 展开更多
关键词 INCOMPLETE NEIGHBORHOOD network
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Cooperative maneuver decision making for multi-UAV air combat based on incomplete information dynamic game 被引量:4
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作者 Zhi Ren Dong Zhang +2 位作者 Shuo Tang Wei Xiong Shu-heng Yang 《Defence Technology(防务技术)》 SCIE EI CAS CSCD 2023年第9期308-317,共10页
Cooperative autonomous air combat of multiple unmanned aerial vehicles(UAVs)is one of the main combat modes in future air warfare,which becomes even more complicated with highly changeable situation and uncertain info... Cooperative autonomous air combat of multiple unmanned aerial vehicles(UAVs)is one of the main combat modes in future air warfare,which becomes even more complicated with highly changeable situation and uncertain information of the opponents.As such,this paper presents a cooperative decision-making method based on incomplete information dynamic game to generate maneuver strategies for multiple UAVs in air combat.Firstly,a cooperative situation assessment model is presented to measure the overall combat situation.Secondly,an incomplete information dynamic game model is proposed to model the dynamic process of air combat,and a dynamic Bayesian network is designed to infer the tactical intention of the opponent.Then a reinforcement learning framework based on multiagent deep deterministic policy gradient is established to obtain the perfect Bayes-Nash equilibrium solution of the air combat game model.Finally,a series of simulations are conducted to verify the effectiveness of the proposed method,and the simulation results show effective synergies and cooperative tactics. 展开更多
关键词 Cooperative maneuver decision Air combat Incomplete information dynamic game Perfect bayes-nash equilibrium Reinforcement learning
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Physics-Informed AI Surrogates for Day-Ahead Wind Power Probabilistic Forecasting with Incomplete Data for Smart Grid in Smart Cities 被引量:1
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作者 Zeyu Wu Bo Sun +2 位作者 Qiang Feng Zili Wang Junlin Pan 《Computer Modeling in Engineering & Sciences》 SCIE EI 2023年第10期527-554,共28页
Due to the high inherent uncertainty of renewable energy,probabilistic day-ahead wind power forecasting is crucial for modeling and controlling the uncertainty of renewable energy smart grids in smart cities.However,t... Due to the high inherent uncertainty of renewable energy,probabilistic day-ahead wind power forecasting is crucial for modeling and controlling the uncertainty of renewable energy smart grids in smart cities.However,the accuracy and reliability of high-resolution day-ahead wind power forecasting are constrained by unreliable local weather prediction and incomplete power generation data.This article proposes a physics-informed artificial intelligence(AI)surrogates method to augment the incomplete dataset and quantify its uncertainty to improve wind power forecasting performance.The incomplete dataset,built with numerical weather prediction data,historical wind power generation,and weather factors data,is augmented based on generative adversarial networks.After augmentation,the enriched data is then fed into a multiple AI surrogates model constructed by two extreme learning machine networks to train the forecasting model for wind power.Therefore,the forecasting models’accuracy and generalization ability are improved by mining the implicit physics information from the incomplete dataset.An incomplete dataset gathered from a wind farm in North China,containing only 15 days of weather and wind power generation data withmissing points caused by occasional shutdowns,is utilized to verify the proposed method’s performance.Compared with other probabilistic forecastingmethods,the proposed method shows better accuracy and probabilistic performance on the same incomplete dataset,which highlights its potential for more flexible and sensitive maintenance of smart grids in smart cities. 展开更多
关键词 Physics-informed method probabilistic forecasting wind power generative adversarial network extreme learning machine day-ahead forecasting incomplete data smart grids
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Strategies to manage the difficult colonoscopy 被引量:1
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作者 Mike T Wei Shai Friedland 《World Journal of Gastrointestinal Endoscopy》 2023年第7期491-495,共5页
During endoscopy,an endoscopist is inevitably faced with the occasional“difficult colonoscopy,”in which the endoscopist finds it challenging to advance the endoscope to the cecum.Beyond optimization of technique,wit... During endoscopy,an endoscopist is inevitably faced with the occasional“difficult colonoscopy,”in which the endoscopist finds it challenging to advance the endoscope to the cecum.Beyond optimization of technique,with minimized looping,minimal insufflation,sufficient sedation,and abdominal splinting when needed,sometimes additional tools may be needed.In this review,we cover available techniques and technologies to help navigate the difficult colonoscopy,including the ultrathin colonoscope,rigidizing overtube,balloon-assisted colonoscopy and the abdominal compression device. 展开更多
关键词 Difficult colonoscopy Incomplete colonoscopy Overtube Water immersion COLONOSCOPY Balloon enteroscopy
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Macrophage fumarate hydratase restrains mtRNA-mediated interferon production 被引量:1
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作者 Alexander Hooftman 《四川生理科学杂志》 2023年第3期548-548,共1页
Metabolic rewiring underlies the effector functions of macrophages1-3,but the mechanisms involved remain incompletely defined.Here,using unbiased metabolomics and stable isotope-assisted tracing,we show that an inflam... Metabolic rewiring underlies the effector functions of macrophages1-3,but the mechanisms involved remain incompletely defined.Here,using unbiased metabolomics and stable isotope-assisted tracing,we show that an inflammatory aspartate argininosuccinate shunt is induced following lipopolysaccharide stimulation.The shunt,supported by increased argininosuccinate synthase(ASS1)expression,also leads to increased cytosolic fumarate levels and fumarate-mediated protein succination.Pharmacological inhibition and genetic ablation of the tricarboxylic acid cycle enzyme fumarate hydratase(FH)further increases intracellular fumarate levels. 展开更多
关键词 restrain INCOMPLETE FUMARATE
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Gap-free genome assembly and CYP450 gene family analysis reveal the biosynthesis of anthocyanins in Scutellaria baicalensis
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作者 Tianlin Pei Sanming Zhu +6 位作者 Weizhi Liao Yumin Fang Jie Liu Yu Kong Mengxiao Yan Mengying Cui Qing Zhao 《Horticulture Research》 SCIE CSCD 2023年第12期217-231,共15页
Scutellaria baicalensis Georgi,a member of the Lamiaceae family,is a widely utilized medicinal plant.The flavones extracted from S.baicalensis contribute to numerous health benefits,including anti-inflammatory,antivir... Scutellaria baicalensis Georgi,a member of the Lamiaceae family,is a widely utilized medicinal plant.The flavones extracted from S.baicalensis contribute to numerous health benefits,including anti-inflammatory,antiviral,and anti-tumor activities.However,the incomplete genome assembly hinders biological studies on S.baicalensis.This study presents the first telomere-to-telomere(T2T)gap-free genome assembly of S.baicalensis through the integration of Pacbio HiFi,Nanopore ultra-long and Hi-C technologies.A total of 384.59 Mb of genome size with a contig N50 of 42.44 Mb was obtained,and all sequences were anchored into nine pseudochromosomes without any gap or mismatch.In addition,we analysed the major cyanidin-and delphinidin-based anthocyanins involved in the determination of blue-purple flower using a widely-targeted metabolome approach.Based on the genome-wide identification of Cytochrome P450(CYP450)gene family,three genes(SbFBH1,2,and 5)encoding flavonoid 3′-hydroxylases(F3′Hs)and one gene(SbFBH7)encoding flavonoid 3′5′-hydroxylase(F3′5′H)were found to hydroxylate the B-ring of flavonoids.Our studies enrich the genomic information available for the Lamiaceae family and provide a toolkit for discovering CYP450 genes involved in the flavonoid decoration. 展开更多
关键词 CYP450 INCOMPLETE utilized
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Evolutionary relationships of mitogenomes in a recently radiated Old World avian family
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作者 Wenqing Zang Zhiyong Jiang +5 位作者 Per G.P.Ericson Gang Song Sergei VDrovetski Takema Saitoh Fumin Lei Yanhua Qu 《Avian Research》 SCIE CSCD 2023年第2期153-159,共7页
Environmentally heterogeneous mountains provide opportunities for rapid diversification and speciation.The family Prunellidae(accentors)is a group of birds comprising primarily mountain specialists that have recently ... Environmentally heterogeneous mountains provide opportunities for rapid diversification and speciation.The family Prunellidae(accentors)is a group of birds comprising primarily mountain specialists that have recently radiated across the Palearctic region.This rapid diversification poses challenges to resolving their phylogeny.Herein we sequenced the complete mitogenomes and estimated the phylogeny using all 12(including 28 individuals)currently recognized species of Prunellidae.We reconstructed the mitochondrial genome phylogeny using 13 protein-coding genes of 12 species and 2 Eurasian Tree Sparrows(Passer montanus).Phylogenetic relationships were estimated using a suite of analyses:maximum likelihood,maximum parsimony and the coalescent-based SVDquartets.Divergence times were estimated by implementing a Bayesian relaxed clock model in BEAST2.Based on the BEAST time-calibrated tree,we implemented an ancestral area reconstruction using RASP v.4.3.Our phylogenies based on the maximum likelihood,maximum parsimony and SVDquartets approaches support a clade of large-sized accentors(subgenus Laiscopus)to be sister to all other accentors with small size(subgenus Prunella).In addition,the trees also support the sister relationship of P.immaculata and P.rubeculoides+P.atrogularis with 100%bootstrap support,but the relationships among the remaining eight species in the Prunella clade are poorly resolved.These species cluster in different positions in the three phylogenetic trees and the nodes are often poorly supported.The five nodes separating the seven species diverged simultaneously within less than half million years(i.e.,between 2.71 and 3.15 million years ago),suggesting that the recent radiation is likely responsible for rampant incomplete lineage sorting and gene tree conflicts.Ancestral area reconstruction indicates a central Palearctic region origin for Prunellidae.Our study highlights that whole mitochondrial genome phylogeny can resolve major lineages within Prunellidae but is not sufficient to fully resolve the relationship among the species in the Prunella clade that almost simultaneously diversify during a short time period.Our results emphasize the challenge to reconstruct reliable phylogenetic relationship in a group of recently radiated species. 展开更多
关键词 Incomplete lineage sorting Mitochondrial genome Mountain specialists RADIATION
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