InvasionDB: A genome and gene database of invasive alien species

Invasive alien species(IAS) are species whose introduction to areas outside of their native range cause harm to economics, biodiversity, and the environment. Understanding the genetic basis of invasiveness is critical for preventing invasion by an alien species and managing IAS with eco-friendly control methods. In addition, uncovering the genomic features of IAS is essential for accurately predicting invasiveness. However, even though increasing efforts have been devoted to sequencing the genomes of IAS, there is still not an integrated genome database for the invasive biology community. Here, we first determined a list of invasive plants and animals by mining references and databases. Then, we retrieved the genomic and gene data of these IAS, and constructed a database, Invasion DB. Invasion DB encompasses 131 IAS genomes, 76 annotated IAS assemblies, and links these data to conventional functions such as searching for gene coding sequences and Pfam, KEGG, NR annotations, BLAST server, JBrowse, and downloads services. Next, we analyzed 19 invasivenessrelated gene families which confer invasiveness in insects. To study the roles of noncoding RNA in invasiveness, we also annotated 135 494 mi RNAs, 89 294 r RNAs, and 2 671 941 t RNAs from these IAS. In summary, Invasion DB is useful for studying the invasiveness at the genomic level, and thus helps to develop novel management strategies to control IAS.

An unprotected vulnerable relict subtropical conifer-Keteleeria evelyniana: Its forests, populations, growth and endangerment by invasive alien plant species in China

Relict subtropical coniferous forests in China face severe fragmentation,resulting in declining populations,and some are under significant threat from invasive alien species.Despite the crucial importance of understanding forest dynamics,knowledge gaps persist,particularly regarding the impact of invasive plants on vulnerable natives like Keteleeria evelyniana.In this study,we investigated the impact of invasive plants on the regeneration of forests dominated by K.evelyniana,a subtropical relict species in southwestern China.For this purpose,we characterized forest dynamics of 160 forest plots featuring K.evelyniana as the primary dominant species and determined whether the presence of invasive plants was correlated with regeneration of K.evelyniana.We identified four distinct forest types in which K.evelyniana was dominant.We found that radial growth of K.evelyniana trees is faster in younger ageclasses today than it was for older trees at the same age.The population structure of K.evelyniana in each forest type exhibited a multimodal age-class distribution.However,three forest types lacked established saplings younger than 10 years old,a situation attributed to the dense coverage of the invasive alien Ageratina adenophora.This invasive species resulted in a reduction of understory species diversity.Additionally,our analysis uncovered a significant negative correlation in phylogenetic relatedness(net relatedness index)between native and invasive alien plant species in eastern Yunnan.This suggests closely related invasive species face heightened competition,hindering successful invasion.Taken together,our findings indicate that successful establishment and habitat restoration of K.evelyniana seedling/saplings require effective measures to control invasive plants.

Zoonotic parasites carried by invasive alien species in China

Background:The invasive alien species may lead to great environmental and economic crisis due to its strong capability of occupying the biological niche of native species and altering the ecosystem of the invaded area.However,its potential to serve as the vectors of some specific zoonotic pathogens,especially parasites,has been neglected.Thus,the damage that it may cause has been hugely underestimated in this aspect,which is actually an important public health problem.This paper aims to discuss the current status of zoonotic parasites carried by invasive alien species in China.Main body:This review summarizes the reported zoonotic parasites carried by invasive alien species in China based on the Database of Invasive Alien Species in China.We summarize their prevalence,threat to human health,related reported cases,and the roles of invasive alien species in the life cycle of these parasites,and the invasion history of some invasive alien species.Furthermore,we sum up the current state of prevention and control of invasive alien species in China,and discuss about the urgency and several feasible strategies for the prevention and control of these zoonoses under the background of booming international communications and inevitable globalization.Conclusions:Information of the zoonotic parasites carried by invasive alien species neither in China or worldwide,especially related case reports,is limited due to a long-time neglection and lack of monitoring.The underestimation of their damage requires more attention to the monitoring and control and compulsory measures should be taken to control the invasive alien species carrying zoonotic parasites.

Seed bank dynamics of an invasive alien species, Helianthus annuus L.

Aims The ability to form persistent seed banks is one of the best predictors of species’potential to establish in new ranges.Wild sunflower is native to North America where the formation of persistent seed banks is promoted by disturbance and it plays a key role on the establishment and persistence of native populations.However,the role of the seed banks on the establishment and persistence of invasive populations has not been studied.Here,we evaluated the role of seed bank and disturbance on the establishment and fitness,and seed persistence in the soil in several sunflower biotypes collected in ruderal(wild Helianthus annuus)and agrestal(natural crop–wild hybrid)habitats of Argentina as well as volunteer populations(progeny of commercial cultivars).Methods In a seed-bank experiment,we evaluated emergence,survival to reproduction,survival of emerged seedlings,inflorescences per plant and per plot under disturbed and undisturbed conditions over 2 years;in a seed-burial experiment,we evaluated seed persistence in the soil over four springs(6,18,30 and 42 months).Important Findings Overall,seedling emergence was early in the growing season(during winter),and it was promoted by disturbance,especially in the first year.Despite this,the number of inflorescences per plot was similar under both conditions,especially in ruderals.In the second year,emergence from the seed bank was much lower,but the survival rate was higher.In the seed-burial experiment,genetic differences were observed but seeds of ruderals and agrestals persisted up to 42 months while seeds of the volunteer did not persist longer than 6 months.The agrestal biotype showed an intermediate behavior between ruderals and volunteers in both experiments.Our findings showed that wild and crop–wild sunflower can form persistent seed banks outside its native range and that disturbance may facilitate its establishment in new areas.

Uses of Invasive Alien Plant Species in Rema-Kalenga Wildlife Sanctuary of Bangladesh

An exploratory survey was conducted on the uses and role of invasive alien species(IAS) to local livelihoods in the Rema-Kalenga Wildlife Sanctuary in the northeastern hilly region of Bangladesh.Vegetation was sampled in 50 quadrates,each 10 m×10 m,and 25 line transects,each 50 m×20 m,through a combination of random and systematic sampling.Group discussions were also arranged with fifty local inhabitants(17 % of the total inhabitants) to learn the various uses of IAS.A total of 17 alien plant species belonging to 10 different families,of which Leguminosae constitutes the highest number(5 species),include tree(53%) followed by herb(12%),shrub(12%) and others(weed,climber and palm).The majority of the identified species were found to be used for fuel,followed by timber production,medicinal or curative uses,fodder,and many others.In addition to providing various forest products,alien tree species planted in forest plantation help provide many vital ecosystem services such as soil amelioration through nitrogen fixation.It is true that the alien species have some negative impacts on local ecosystems,and not all of them are harmful.Therefore,a national programme must be initiated to distinguish the harmful from the harmless species and to identify the uses and impacts of the former and latter.

Environmental Impacts of Invasive Alien Plant Species on the Biodiversity of the Nyika National Park, Rumphi District, Malawi

Invasive alien plant species have threatened the integrity of ecosystems and threatened biological integrity throughout the world. In the Nyika National Park, a number of alien invasive plant species have been reported. These invasive alien plants are reported to be very difficult that have caused adverse ecological, economic and social impact. The main objective of this study is to assess the environmental impact of plant invasive alien species in Nyika National Park in order to ascertain means of addressing the possible effects on the biodiversity. This study adopted an exploratory stance in order to answer the hypotheses where purposive and simple random sampling was used. Purposive sampling was only used to the staff of Nyika while simple random sampling was used to collect data from households surrounding Nyika National Park. The results revealed that invasive alien plant species have some ecological impacts of on the biodiversity of the Nyika National Park like change in physical habitats such as loss of native habitats, alteration of ground water regime, drying of rivers, loss of native species and alteration of biomass. The study would therefore be important to policy makers in guiding and development of policies and guidelines governing eradication of invasive alien plant species. The Department of National Parks and Wildlife (DNPW) can form partnership with various stakeholders with a clearly stated intention of developing a relationship, based on collaboration to enhance the control of invading alien plant species and the best management practices.

Monitoring River Restoration Efforts: Do Invasive Alien Plants Endanger the Success? A Case Study of the Traisen River

River restoration activities are challenging for the native vegetation and the colonization process. The development of invasive alien plant species (IAS) as well as the development of the pioneer vegetation cover and seed bank were observed in one year prior to construction of a new river bed and within the first two years after construction, along the downstream section of the river Traisen in Austria. One year after completion of the new river channel, the occurrence of IAS above ground decreased while the occurrence of target species increased. Furthermore, no seeds of IAS were detected in the new river bed as a result of proper management of soil movement. Despite the positive impact on the abundance of IAS, the restoration project of the river Traisen shows that the fact that such a restoration activity is a disturbance event must be taken into consideration already during the planning process. Supporting the competitiveness of native plant species is an important tool for reducing the danger of establishment of invasive alien species.

Research on the Control Cover against Solenopsis invicta and Rapid Extinguishment of Its Epidemic

Based on the biological characteristics of Solenopsis invicta and the structural characteristics of its ant nest,a fast and efficient closed treatment device was developed.Compared with the simple chemical treatment commonly used at present,the developed treatment device(the ant nest control cover)is a fast and efficient method to exterminate S.invicta in 7 d,featured by short course,quick results and good effect.

Genetic structure of the invasive Colorado potato beetle Leptinotarsa decemlineata populations in China

The Colorado potato beetle(CPB),Leptinotarsa decemlineata Say,is an infamous invasive species worldwide.It was first found in Xinjiang Uygur Autonomous Region of China in 1993 and spread to Northeast China in 2013.To better understand the genetic structure and the diffusion path of their populations in China,we used nine polymorphic microsatellite loci to elucidate the genetic diversity,genetic structure and gene flow among nine CPB populations across Xinjiang and Northeast China.The results show that:(1)Two genetically separated clusters were identified by phylogenetic tree,principal coordinate analysis(PCoA)and Bayesian cluster method.Cluster one contained populations from Xinjiang,China.Cluster two contained populations from Northeast China.A genetic differentiation existed between the two clusters.(2)Three populations in Northeast China hold an obvious genetic differentiation according to the phylogenetic tree and PCoA,indicating that multiple introductions may occur in Northeast China.(3)The Altay population in Xinjiang showed a closer genetic relationship with the populations in Northeast China which may be due to the fact that they collectively originated in neighboring Russia.(4)Among all populations,Mulei and Wusu had obvious gene migrations from Tacheng,indicating that the inland populations are most likely to originate from Tacheng,Xinjiang.

Development of a mathematical model to evaluate the rate of aggregate risk of invasive alien plant species： Fuzzy risk assessment approach

This study presents a novel approach to evaluate the rate of aggregate risk of Invasive Alien Plant Species. Using risk values and grade of importance of weights of risk factors which may reflect invasiveness of plant species are considered. We use Linguistic Ordered Weighted Averaging operator to evaluate the grade of important of weights. Since the risk values and important weights are identified from two different linguistic term sets, fuzzy set theory techniques were used to combine the two sets. The rates obtained from the model were compared with NRA risk levels and the model was validated with data from known and non-invasive species. The model is improved by weighting the risk values of risk factors. The improved model produced significant results and resulted a better tracking system for identifying potential invaders than the conventional risk assessment.

Biology,invasion and management of the agricultural invader:Fall armyworm,Spodoptera frugiperda(Lepidoptera:Noctuidae)

The fall armyworm(FAW),Spodoptera frugiperda(J.E.Smith),is native to the Americas.It has rapidly invaded 47 African countries and 18 Asian countries since the first detection of invasion into Nigeria and Ghana in 2016.It is regarded as a super pest based on its host range(at least 353 host plants),its inherent ability to survive in a wide range of habitats,its strong migration ability,high fecundity,rapid development of resistance to insecticides/viruses and its gluttonous characteristics.The inherently superior biological characteristics of FAW contribute to its invasiveness.Integrated pest management(IPM)of FAW has relied on multiple applications of monitoring and scouting,agricultural control,chemical pesticides,viral insecticides,sex attractants,bio-control agents(parasitoids,predators and entomopathogens)and botanicals.Knowledge gaps remain to be filled to:(1)understand the invasive mechanisms of S.frugiperda;(2)understand how to prevent its further spread and(3)provide better management strategies.This review summarizes the biological characters of FAW,their association with its invasiveness and IPM strategies,which may provide further insights for future management.

Contrasting responses of native and alien plant species to soil properties shed new light on the invasion of dune systems

Aims Among terrestrial ecosystems,coastal sandy dunes are particularly prone to alien plant invasion.Many studies related the invasion of dune habitats to anthropic causes,but less is known about the role of soil properties and plant traits in plant invasion.In this study,we tested the relationships between soil features and alien plant invasion in dune systems,focusing on the interplay between soil nutrients,soil salinity and plant functional traits.Methods Study sites were sandy barrier islands of the Marano and Grado lagoon(northern Adriatic Sea).One hundred plots(4 m×4 m)were selected within 10 areas according to the main habitats occurring along the ecological gradient of dune system(foredune,backdune and saltmarsh).In each plot,we recorded all plant species occurrence and abundance and we collected a soil core.For each soil sample,soil texture,conductivity(as proxy of soil salinity),organic carbon and nitrogen content were analyzed and related to the species number and cover of native and alien plants.Variation of main reproductive and vegetative functional traits among habitats was also analyzed for both alien and native species.Important Findings Soil properties were strongly related to overall plant diversity,by differently affecting alien and native species pools.In backdune,the most invaded habitat,a high soil conductivity limited the number of alien species,whereas the content of soil organic carbon increased along with alien plant abundance,suggesting also the occurrence of potential feedback processes between plant invasion and soil.We found a significant convergence between native and alien plant functional trait spectra only in backdune habitat,where environmental conditions ameliorate and plant competition increases.Our findings suggest that in harsh conditions only native specialized plants can thrive while at intermediate conditions,soil properties gradient acts in synergy with plant traits to curb/facilitate alien plant richness.

Acacia mearnsii management in a South African National Parks：SWOT analysis using hot topics in biological invasion as a guide

The assessment of the policy framework governing Invasive Alien Species(IAS) control is of critical importance in conservation. The undertaking of a SWOT analysis of such a framework is necessary because it enhances the efficacy of IAS control. The aim of this study is to carry out a SWOT analysis of the policy framework guiding the control of the spreading of Acacia mearnsii and other IAS in the Golden Gate Highlands National Park in South Africa,as well as the implementation of restorative measures in the park and adjacent communities in line with the recommendations of the Convention on Biodiversity. A comparative analysis of this framework and the hierarchical framework that was developed during the European Union Conference on Freshwater Invasives- Networking for Strategy in 2013 is undertaken. The results indicate the need to strengthen parkcommunity relations,upgrade existing legislation,and boost the technical capacity of South African national parks to identify,detect,monitor and predict IAS invasions,both within the parks and their surroundings. This knowledge is important for developing future policies on IAS control in South Africa.

Charcoal Production as a Means of Forest Management, Biodiversity Conservation and Livelihood Support in Nepal

Invasive alien species （IAS） are considered as an overlooked forest resources in Nepal, despite its rapid expansion is considered as one of the main drivers of Nepal＇s forest degradation and deforestation. In this study, stratified systematic sampling, with nested circular plots of 500 m2, was performed in Sindhupalchowk to find out whether the removal of IAS contributes for an increase in plant diversity, Interaction with more than 310 entrepreneurs was carded to investigate the economic benefits in terms of income and employment of converting IAS into charcoal through pyrolysis in ＂bio-energy kilns＂. The study showed a higher Shannon-Weiner plant diversity index at regeneration level in IAS removed area （2.43） than that in control （1.95）. Similarly, the number of seedlings and saplings was significantly higher （P 〈 0.05） in the treatment block than the number of trees in the control one. Also, the pyrolysis of 7,500 million tons （MT） of IAS in bio-energy kilns produced 1,500 MT of charcoal powder which generated a total additional income of Nepali Rupees （NRs.） 18,900,000 to 1,050 poor and disadvantaged people in ! 6 districts of Terai and Midhills. In spite of that, some policy hurdles, such as charcoal transportation, were observed at the operational level. It is suggested that the plant diversity could be increased through the removal of IAS, and considerable economic benefits could be achieved if charcoal is substantially produced and utilized.

Effects of Water Extract of Erigeron canadensis L. on Seed Germination of Plants

[Objective] The paper was to explore the effect of water extract of Erigeron canadensis L. on seed germination of plants. [Method] Using constant temperature culture method, the effects of water extracts of roots, stems and leaves of E. canadensis on seed germination of 14 species of test plants （crops and weeds） were studied. [Result] Water extracts of roots, stems and leaves of E. canadensis had obvious inhibition effect on seed germination of test plants. The water extract of leaves had the strongest inhibition effect, which could completely inhibit the seed germination of Crepis tectorum L., Amaranthus tricolor L. and Chrysanthemum coronarium L. under the lower concentrations of 0.050 and 0.075 g/ml, and completely inhibit seed germination of all the plants under the concentration of 0.400 g/ml except Zea maize L. and Allium fistulosum L.; followed by water extract of stems, and the water extract of roots had the lowest the inhibition effect, except for completely restraining seed germination of Lycopersicum esculentum L. under the concentration of 0.300 g/ml, it still could not completely restrain seed germination of the other plants under the highest concentration of 0.500 g/ml. The inhibition effect of water extract of E. canadensis on seed germination of plants had obvious selectivity, which had more obvious effect on dicotyledonous plants than monocotyledonous plants. [Conclusion] The study provided reference for screening and utilization of allelochemicals of E. canadensis and research on its allelopathy mechanism.

Population increase and changes in behavior and morphology in the Critically Endangered Redonda ground lizard(Pholidoscelis atratus)following the successful removal of alien rats and goats

Redonda is a small volcanic Caribbean island that is home to at least 4 endemic lizard species,including the Critically Endangered ground lizard(Pholidoscelis atratus).Black rats(Rattus rattus)and domestic goats(Capra hircus)were introduced to the island at some time after its discovery by Europeans in the late 1500s.They had a devastating effect on the island,resulting in the loss of nearly all trees and most of the ground vegetation.Point count surveys of P.atratus in 2012 indicated low densities,and the invasive rats were observed hunting and preying on the lizards.Both populations of rats and goats were successfully removed in 2017 as part of an ecological restoration program,and native vegetation and invertebrate populations have increased rapidly since.Population surveys in 2017,2018,and 2019 show the lizard population has increased by more than sixfold.In 2017,as rats and goats were being removed,we evaluated the morphology and escape behavior of this species and repeated these measurements 1 year later.We observed that P.atratus had become bolder,with a reduced flight distance.We also detected changes in limb morphology related to locomotion and suggest possible explanations that will need to be further investigated in the future.These results show how the removal of invasive species can rapidly affect lizard population recovery and behavior,potentially restoring island ecosystems to their pre-human interference dynamics.

Mapping common and glossy buckthorns (Frangula alnus and Rhamnus cathartica) using multi-date satellite imagery WorldView-3, GeoEye-1 and SPOT-7

Buckthorns(Glossy buckthorn,Frangula alnus and common buckthorn,Rhamnus cathartica)represent a threat to biodiversity.Their high competitivity lead to the replacement of native species and the inhibition of forest regeneration.Early detection strategies are therefore necessary to limit invasive alien plant species’impacts,and remote sensing is one of the techniques for early invasion detection.Few studies have used phenological remote sensing approaches to map buckthorn distribution from medium spatial resolution images.Those studies highlighted the difficulty of detecting buckthorns in low densities and in understory using this category of images.The main objective of this study was to develop an approach using multi-date very high spatial resolution satellite imagery to map buckthorns in low densities and in the understory in the Québec city area.Three machine learning classifiers(Support Vector Machines,Random Forest and Extreme Gradient Boosting)were applied to WorldView-3,GeoEye-1 and SPOT-7 satellite imagery.The Random Forest classifier performed well(Kappa=0.72).The SVM and XGBoost’s coefficient Kappa were 0.69 and 0.66,respectively.However,buckthorn distribution in understory was identified as the main limit to this approach,and LiDAR data could be used to improve buckthorn mapping in similar environments.

The failed invasion of Harmonia axyridis in the Azores, Portugal: Climatic restriction or wrong population origin?

We tested two questions:(i)whether the climatic conditions of the Azorean Islands in Portugal may have restricted the invasion of Harmonia axyridis across this archipelago and(ii)determine what population of this species could have a higher probability of invading the islands.We used MaxEnt to project the climate requirements of different H.axyridis populations from three regions of the world,and the potential global niche of the species in the Azorean islands.Then we assessed the suitability of the islands for each of the three H.axyridis populations and global potential niche through histograms analysis,Principal Component Analysis(PCA)of climate variables,and a variable-by-variable assessment of the suitability response curves compared with the climatic conditions of the Azores.Climatic conditions of the Azores are less suitable for the U.S.and native Asian populations of H.axyridis,and more suitable for European populations and the global potential niche.The PCA showed that the climatic conditions of the islands differed from the climatic requirements of H.axyridis.This difference is mainly explained by precipitation of the wettest month,isothermality,and the minimum temperature of the coldest month.We concluded that the climatic conditions of the Azores could have influenced the establishment and spread of H.axyridis on these islands from Europe.Our results showed that abiotic resistance represented by the climate of the potentially colonizable zones could hinder the establishment of invasive insects,but it could vary depending of the origin of the colonizing population.

Complex relationships between physiological stress and endoparasite infections in natural populations

Short-term elevation of glucocorticoids(GCs)is one of the major physiological mechanisms by which vertebrates cope with challenging environmental or social factors(stressors).However,when exposure to stressors occurs repeatedly or over a prolonged period of time,animals may experience chronic elevation of GCs,which reduces the immune response efficiency and can lead to higher intensity of parasitic infection.Here,we used invasive gray squirrels Sciurus carolinensis in troduced in Norther n Italy and their 2 most prevale nt gastrointesti nal parasites,the n ematode Strongyloides robustus and coccidia of the genus Eimeria,as a model to investigate relati on ships among macroparasite infection and concentrations of fecal glucocorticoid metabolites(FGMs),an integrated measure of circulating GCs.Our results revealed an association of FGMs with infection by St.robustus,but not with coccidia.Individuals with higher FGMs appear to be responsible for the greatest St.robustus egg shedding within gray squirrel populations,thus possibly acting as superspreaders.However,FGMs were negatively associated with adult St.robustus,suggesting that the abundance of adults of this nematode species does not induce elevation in FGMs,but is only affected by it through immun e-mediated effects on its fecun dity.Fin ally,the relati on ship betwee n St.robustus(both eggs and adult parasites)and FGMs was not linear,suggesting that only high levels of physiological stress in fluence parasite inf ection.Our fin dings highlight that the direction and magnitude of the stress-infection relationship may depend not only on the specific hostparasite system,but also on the different life stages of the same parasite.

Human disturbance, climate and biodiversity determine biological invasion at a regional scale

Many factors may affect biological invasion,but their effects have not been quantitatively calculated.Recent studies on the relationship between biodiversity and biological invasion are still controversial.Native biodiversity and alien species diversity are often positively correlated in large-scale observation studies,but negatively correlated in smallscale experimental studies.By using partial correlation and principal component regression methods,we found that human disturbance,climate,native biodiversity and their interactions explained,respectively,30.3,34.6,26.4 and 4.4%of the variation in alien species diversity(ASD)and 50.3,22.2,10.8 and 5.5%of the variation in the relative invasibility of alien species(RIA=ASD/native biodiversity)at the regional scale in China.The correlation between ASD and native biodiversity is positive,but the correlation between RIA and native biodiversity is negative.Island and coastal provinces have suffered heavier biological invasions than inland provinces.These findings indicate that biological invasion is mostly determined by human disturbance and favorable climate,but less determined by native biodiversity.A disturbance-dependent niche-vacancy hypothesis is proposed to explain the contradictory observations in largeand small-scale studies.