A molecular phylogenetic analysis of the genus Corchorus(Grewioideae,Malvaceae s.l.)is presented,based on sequences of the nuclear ribosomal DNA internal transcribed spacer(ITS)region for 144 accessions representing 4...A molecular phylogenetic analysis of the genus Corchorus(Grewioideae,Malvaceae s.l.)is presented,based on sequences of the nuclear ribosomal DNA internal transcribed spacer(ITS)region for 144 accessions representing 47 species.Several other genera from the subfamily Grewioideae,namely Pseudocorchorus,Triumfetta,Sparrmannia,Entelea,and Grewia,were included as outgroups.The monophyly of the genus was well supported by all phylogenetic analyses(maximum likelihood,Bayesian approaches,and parsimony),and Corchorus was divided into four major clades.The majority of African species formed a statistically highly supported and distinct clade separated from the other pantropically distributed species.Several endemic species from Australia,New Caledonia,and tropical America were nested within this distinct clade,indicating dispersal from Africa to the rest of the pantropics.Based on the taxa included in this study,the two cultivated species(C.olitorius and C.capsularis)shared a common ancestry with wild species of C.africanus,C.brevicornatus,C.pseudocapsularis,C.pseudo-olitorius,C.urticifolius,C.pilosus,C.orinocensis,and C.cunninghamii.Pseudocorchorus,previously considered an accepted genus,was nested within the genus Corchorus and shared a common ancestry especially with C.depressus and C.siliquosus.Based on morphological and anatomical similarity as well as the results of the present molecular findings,inclusion of the six Pseudocorchorus species into Corchorus is proposed,with Pseudocorchorus as a synonym of Corchorus.Of the included outgroup taxa,Triumfetta is the closest sister to Corchorus,while the common ancestor of Corchorus/Pseudocorchorus,Triumfetta,Sparrmannia,and Entelea is Grewia.A further phylogenetic study with more taxa mainly from Australia,together with additional molecular markers and morphological investigation,would help to test the hypothesis on the biogeography and growth form evolution of the genus Corchorus.展开更多
基金the German Academic Exchange Service (DAAD)the Leibniz Institute of Plant Genetics and Crop Research (IPK),Germany
文摘A molecular phylogenetic analysis of the genus Corchorus(Grewioideae,Malvaceae s.l.)is presented,based on sequences of the nuclear ribosomal DNA internal transcribed spacer(ITS)region for 144 accessions representing 47 species.Several other genera from the subfamily Grewioideae,namely Pseudocorchorus,Triumfetta,Sparrmannia,Entelea,and Grewia,were included as outgroups.The monophyly of the genus was well supported by all phylogenetic analyses(maximum likelihood,Bayesian approaches,and parsimony),and Corchorus was divided into four major clades.The majority of African species formed a statistically highly supported and distinct clade separated from the other pantropically distributed species.Several endemic species from Australia,New Caledonia,and tropical America were nested within this distinct clade,indicating dispersal from Africa to the rest of the pantropics.Based on the taxa included in this study,the two cultivated species(C.olitorius and C.capsularis)shared a common ancestry with wild species of C.africanus,C.brevicornatus,C.pseudocapsularis,C.pseudo-olitorius,C.urticifolius,C.pilosus,C.orinocensis,and C.cunninghamii.Pseudocorchorus,previously considered an accepted genus,was nested within the genus Corchorus and shared a common ancestry especially with C.depressus and C.siliquosus.Based on morphological and anatomical similarity as well as the results of the present molecular findings,inclusion of the six Pseudocorchorus species into Corchorus is proposed,with Pseudocorchorus as a synonym of Corchorus.Of the included outgroup taxa,Triumfetta is the closest sister to Corchorus,while the common ancestor of Corchorus/Pseudocorchorus,Triumfetta,Sparrmannia,and Entelea is Grewia.A further phylogenetic study with more taxa mainly from Australia,together with additional molecular markers and morphological investigation,would help to test the hypothesis on the biogeography and growth form evolution of the genus Corchorus.
文摘黄麻是世界上重要的天然韧皮部纤维作物之一。然而, SSR标记的缺乏限制了黄麻的遗传改良。本研究从圆果种黄麻测序品种CVL-1的基因组、基因、CDS和cDNA中挖掘SSR信息,利用SSR Primer软件查找SSR位点,并分析其分布特征。结果表明,基于基因组序列共开发了153,242个基因组SSR,平均密度为467.20个SSRMb^(–1);基于cDNA序列开发了10,747个SSR,平均密度为260.85 SSR Mb^(–1)。大部分重复基元为二至四核苷酸,占76.91%,其中cDNA序列SSR中三核苷酸重复基元数量较多而基因组SSR中二核苷酸重复基元数量较多。对于不同类型的SSR重复基元,随着重复单元数量的增加,其基因组和cDNA的SSR分布频率呈现逐步降低特征。黄麻全基因组SSR标记鉴定,不仅可以丰富黄麻分子标记的数量,而且为剖析黄麻重要农艺性状的遗传机制奠定基础。
