How to extract optimal composite attributes from a variety of conventional seismic attributes to detect reservoir features is a reservoir predication key,which is usually solved by reducing dimensionality.Principle co...How to extract optimal composite attributes from a variety of conventional seismic attributes to detect reservoir features is a reservoir predication key,which is usually solved by reducing dimensionality.Principle component analysis(PCA) is the most widely-used linear dimensionality reduction method at present.However,the relationships between seismic attributes and reservoir features are non-linear,so seismic attribute dimensionality reduction based on linear transforms can't solve non-linear problems well,reducing reservoir prediction precision.As a new non-linear learning method,manifold learning supplies a new method for seismic attribute analysis.It can discover the intrinsic features and rules hidden in the data by computing low-dimensional,neighborhood-preserving embeddings of high-dimensional inputs.In this paper,we try to extract seismic attributes using locally linear embedding(LLE),realizing inter-horizon attributes dimensionality reduction of 3D seismic data first and discuss the optimization of its key parameters.Combining model analysis and case studies,we compare the dimensionality reduction and clustering effects of LLE and PCA,both of which indicate that LLE can retain the intrinsic structure of the inputs.The composite attributes and clustering results based on LLE better characterize the distribution of sedimentary facies,reservoir,and even reservoir fluids.展开更多
A fault detection method based on incremental locally linear embedding(LLE)is presented to improve fault detecting accuracy for satellites with telemetry data.Since conventional LLE algorithm cannot handle incremental...A fault detection method based on incremental locally linear embedding(LLE)is presented to improve fault detecting accuracy for satellites with telemetry data.Since conventional LLE algorithm cannot handle incremental learning,an incremental LLE method is proposed to acquire low-dimensional feature embedded in high-dimensional space.Then,telemetry data of Satellite TX-I are analyzed.Therefore,fault detection are performed by analyzing feature information extracted from the telemetry data with the statistical indexes T2 and squared prediction error(SPE)and SPE.Simulation results verify the fault detection scheme.展开更多
Inspired by the tremendous achievements of meta-learning in various fields,this paper proposes the local quadratic embedding learning(LQEL)algorithm for regression problems based on metric learning and neural networks...Inspired by the tremendous achievements of meta-learning in various fields,this paper proposes the local quadratic embedding learning(LQEL)algorithm for regression problems based on metric learning and neural networks(NNs).First,Mahalanobis metric learning is improved by optimizing the global consistency of the metrics between instances in the input and output space.Then,we further prove that the improved metric learning problem is equivalent to a convex programming problem by relaxing the constraints.Based on the hypothesis of local quadratic interpolation,the algorithm introduces two lightweight NNs;one is used to learn the coefficient matrix in the local quadratic model,and the other is implemented for weight assignment for the prediction results obtained from different local neighbors.Finally,the two sub-mod els are embedded in a unified regression framework,and the parameters are learned by means of a stochastic gradient descent(SGD)algorithm.The proposed algorithm can make full use of the information implied in target labels to find more reliable reference instances.Moreover,it prevents the model degradation caused by sensor drift and unmeasurable variables by modeling variable differences with the LQEL algorithm.Simulation results on multiple benchmark datasets and two practical industrial applications show that the proposed method outperforms several popular regression methods.展开更多
In this paper, a new nonlinear fault detection technique based on locally linear embedding (LLE) is developed. LLE can efficiently compute the low-dimensional embedding of the data with the local neighborhood struct...In this paper, a new nonlinear fault detection technique based on locally linear embedding (LLE) is developed. LLE can efficiently compute the low-dimensional embedding of the data with the local neighborhood structure information preserved. In this method, a data-dependent kernel matrix which can reflect the nonlinear data structure is defined. Based on the kernel matrix, the Nystrrm formula makes the mapping extended to the testing data possible. With the kernel view of the LLE, two monitoring statistics are constructed. Together with the out of sample extensions, LLE is used for nonlinear fault detection. Simulation cases were studied to demonstrate the performance of the proposed method.展开更多
In this paper,a new multiclass classification algorithm is proposed based on the idea of Locally Linear Embedding(LLE),to avoid the defect of traditional manifold learning algorithms,which can not deal with new sample...In this paper,a new multiclass classification algorithm is proposed based on the idea of Locally Linear Embedding(LLE),to avoid the defect of traditional manifold learning algorithms,which can not deal with new sample points.The algorithm defines an error as a criterion by computing a sample's reconstruction weight using LLE.Furthermore,the existence and characteristics of low dimensional manifold in range-profile time-frequency information are explored using manifold learning algorithm,aiming at the problem of target recognition about high range resolution MilliMeter-Wave(MMW) radar.The new algorithm is applied to radar target recognition.The experiment results show the algorithm is efficient.Compared with other classification algorithms,our method improves the recognition precision and the result is not sensitive to input parameters.展开更多
Color transfer between images uses the statistics information of image effectively. We present a novel approach of local color transfer between images based on the simple statistics and locally linear embedding. A ske...Color transfer between images uses the statistics information of image effectively. We present a novel approach of local color transfer between images based on the simple statistics and locally linear embedding. A sketching interface is proposed for quickly and easily specifying the color correspondences between target and source image. The user can specify the corre- spondences of local region using scribes, which more accurately transfers the target color to the source image while smoothly preserving the boundaries, and exhibits more natural output results. Our algorithm is not restricted to one-to-one image color transfer and can make use of more than one target images to transfer the color in different regions in the source image. Moreover, our algorithm does not require to choose the same color style and image size between source and target images. We propose the sub-sampling to reduce the computational load. Comparing with other approaches, our algorithm is much better in color blending in the input data. Our approach preserves the other color details in the source image. Various experimental results show that our approach specifies the correspondences of local color region in source and target images. And it expresses the intention of users and generates more actual and natural results of visual effect.展开更多
Locally linear embedding(LLE)algorithm has a distinct deficiency in practical application.It requires users to select the neighborhood parameter,k,which denotes the number of nearest neighbors.A new adaptive method is...Locally linear embedding(LLE)algorithm has a distinct deficiency in practical application.It requires users to select the neighborhood parameter,k,which denotes the number of nearest neighbors.A new adaptive method is presented based on supervised LLE in this article.A similarity measure is formed by utilizing the Fisher projection distance,and then it is used as a threshold to select k.Different samples will produce different k adaptively according to the density of the data distribution.The method is applied to classify plant leaves.The experimental results show that the average classification rate of this new method is up to 92.4%,which is much better than the results from the traditional LLE and supervised LLE.展开更多
In order to achieve failure prediction without manual intervention for distributed systems, a novel failure feature analysis and extraction approach to automate failure prediction is proposed. Compared with the tradit...In order to achieve failure prediction without manual intervention for distributed systems, a novel failure feature analysis and extraction approach to automate failure prediction is proposed. Compared with the traditional methods which focus on building heuristic rules or models, the autonomic prediction approach analyzes the nonlinear correlation of failure features by recognizing failure patterns. Failure data are sorted according to the nonlinear correlation and failure signature is proposed for autonomic prediction. In addition, the Manifold Learning algorithm named supervised locally linear embedding is applied to achieve feature extraction. Based on the runtime monitoring of failure metrics, the experimental results indicate that the proposed method has better performance in terms of both correlation recognition precision and feature extraction quality and thus it can be used to design efficient autonomic failure prediction for distributed systems.展开更多
The feature extraction algorithm plays an important role in face recognition. However, the extracted features also have overlapping discriminant information. A property of the statistical uncorrelated criterion is tha...The feature extraction algorithm plays an important role in face recognition. However, the extracted features also have overlapping discriminant information. A property of the statistical uncorrelated criterion is that it eliminates the redundancy among the extracted discriminant features, while many algorithms generally ignore this property. In this paper, we introduce a novel feature extraction method called local uncorrelated local discriminant embedding(LULDE). The proposed approach can be seen as an extension of a local discriminant embedding(LDE)framework in three ways. First, a new local statistical uncorrelated criterion is proposed, which effectively captures the local information of interclass and intraclass. Second, we reconstruct the affinity matrices of an intrinsic graph and a penalty graph, which are mentioned in LDE to enhance the discriminant property. Finally, it overcomes the small-sample-size problem without using principal component analysis to preprocess the original data, which avoids losing some discriminant information. Experimental results on Yale, ORL, Extended Yale B, and FERET databases demonstrate that LULDE outperforms LDE and other representative uncorrelated feature extraction methods.展开更多
In the paper, the authors show that any abstract smooth surface can be locally isometricallyembedded into a class of 3-dimensional spaces Nρ0 (ρ0>0) with the non-positively sectionalcurvature being fixed sufficie...In the paper, the authors show that any abstract smooth surface can be locally isometricallyembedded into a class of 3-dimensional spaces Nρ0 (ρ0>0) with the non-positively sectionalcurvature being fixed sufficiently small.展开更多
Image feature optimization is an important means to deal with high-dimensional image data in image semantic understanding and its applications. We formulate image feature optimization as the establishment of a mapping...Image feature optimization is an important means to deal with high-dimensional image data in image semantic understanding and its applications. We formulate image feature optimization as the establishment of a mapping between highand low-dimensional space via a five-tuple model. Nonlinear dimensionality reduction based on manifold learning provides a feasible way for solving such a problem. We propose a novel globular neighborhood based locally linear embedding (GNLLE) algorithm using neighborhood update and an incremental neighbor search scheme, which not only can handle sparse datasets but also has strong anti-noise capability and good topological stability. Given that the distance measure adopted in nonlinear dimensionality reduction is usually based on pairwise similarity calculation, we also present a globular neighborhood and path clustering based locally linear embedding (GNPCLLE) algorithm based on path-based clustering. Due to its full consideration of correlations between image data, GNPCLLE can eliminate the distortion of the overall topological structure within the dataset on the manifold. Experimental results on two image sets show the effectiveness and efficiency of the proposed algorithms.展开更多
This article investigates autonomic failure prediction in large-scale distributed systems with nonlinear dimensionality reduction to automatically extract failure features. Most existing methods for failure prediction...This article investigates autonomic failure prediction in large-scale distributed systems with nonlinear dimensionality reduction to automatically extract failure features. Most existing methods for failure prediction focus on building prediction models or heuristic rules by discovering failure patterns, but the process of feature extraction before failure patterns recognition is rarely considered due to the increasing complexity of modern distributed systems. In this work, a novel performance-centric approach to automate failure prediction is proposed based on manifold learning (ML). In addition, the ML algorithm named supervised locally linear embedding (SLLE) is applied to achieve feature extraction. To generalize the dimensionality reduction mapping, the nonlinear mapping approximation and optimization solution is also proposed. In experimental work a file transfer test bed with fault injection is developed which can gather multilevel performance metrics transparently. Based on the runtime monitoring of these metrics, the SLLE method can automatically predict more than 50% of the central processing unit (CPU) and memory failures, and around 70% of the network failure.展开更多
Emotions are becoming increasingly important in human-centered interaction architectures. Recognition of facial expressions, which are central to human-computer interactions, seems natural and desirable. However, faci...Emotions are becoming increasingly important in human-centered interaction architectures. Recognition of facial expressions, which are central to human-computer interactions, seems natural and desirable. However, facial expressions include mixed emotions, continuous rather than discrete, which vary from moment to moment. This paper represents a novel method of recognizing facial expressions of various internal states via manifold learning, to achieve the aim of humancentered interaction studies. A critical review of widely used emotion models is described, then, facial expression features of various internal states via the locally linear embedding (LLE) are extracted. The recognition of facial expressions is created with the pleasure-displeasure and arousal-sleep dimensions in a two-dimensional model of emotion. The recognition result of various internal state expressions that mapped to the embedding space via the LLE algorithm can effectively represent the structural nature of the two-dimensional model of emotion. Therefore our research has established that the relationship between facial expressions of various internal states can be elaborated in the two-dimensional model of emotion, via the locally linear embedding algorithm.展开更多
Predicting protein functions is an important issue in the post-genomic era. This paper studies several network-based kernels including local linear embedding (LLE) kernel method, diffusion kernel and laplacian kerne...Predicting protein functions is an important issue in the post-genomic era. This paper studies several network-based kernels including local linear embedding (LLE) kernel method, diffusion kernel and laplacian kernel to uncover the relationship between proteins functions and protein-protein interactions (PPI). The author first construct kernels based on PPI networks, then apply support vector machine (SVM) techniques to classify proteins into different functional groups. The 5-fold cross validation is then applied to the selected 359 GO terms to compare the performance of different kernels and guilt-by-association methods including neighbor counting methods and Chi-square methods. Finally, the authors conduct predictions of functions of some unknown genes and verify the preciseness of our prediction in part by the information of other data source.展开更多
One paper in a preceding issue of this journal has introduced the Bayesian Ying-Yang(BYY)harmony learning from a perspective of problem solving,parameter learning,and model selection.In a complementary role,the paper ...One paper in a preceding issue of this journal has introduced the Bayesian Ying-Yang(BYY)harmony learning from a perspective of problem solving,parameter learning,and model selection.In a complementary role,the paper provides further insights from another perspective that a co-dimensional matrix pair(shortly co-dim matrix pair)forms a building unit and a hierarchy of such building units sets up the BYY system.The BYY harmony learning is re-examined via exploring the nature of a co-dim matrix pair,which leads to improved learning performance with refined model selection criteria and a modified mechanism that coordinates automatic model selection and sparse learning.Besides updating typical algorithms of factor analysis(FA),binary FA(BFA),binary matrix factorization(BMF),and nonnegative matrix factorization(NMF)to share such a mechanism,we are also led to(a)a new parametrization that embeds a de-noise nature to Gaussian mixture and local FA(LFA);(b)an alternative formulation of graph Laplacian based linear manifold learning;(c)a codecomposition of data and covariance for learning regularization and data integration;and(d)a co-dim matrix pair based generalization of temporal FA and state space model.Moreover,with help of a co-dim matrix pair in Hadamard product,we are led to a semi-supervised formation for regression analysis and a semi-blind learning formation for temporal FA and state space model.Furthermore,we address that these advances provide with new tools for network biology studies,including learning transcriptional regulatory,Protein-Protein Interaction network alignment,and network integration.展开更多
基金National Key Science & Technology Special Projects(Grant No.2008ZX05000-004)CNPC Projects(Grant No.2008E-0610-10).
文摘How to extract optimal composite attributes from a variety of conventional seismic attributes to detect reservoir features is a reservoir predication key,which is usually solved by reducing dimensionality.Principle component analysis(PCA) is the most widely-used linear dimensionality reduction method at present.However,the relationships between seismic attributes and reservoir features are non-linear,so seismic attribute dimensionality reduction based on linear transforms can't solve non-linear problems well,reducing reservoir prediction precision.As a new non-linear learning method,manifold learning supplies a new method for seismic attribute analysis.It can discover the intrinsic features and rules hidden in the data by computing low-dimensional,neighborhood-preserving embeddings of high-dimensional inputs.In this paper,we try to extract seismic attributes using locally linear embedding(LLE),realizing inter-horizon attributes dimensionality reduction of 3D seismic data first and discuss the optimization of its key parameters.Combining model analysis and case studies,we compare the dimensionality reduction and clustering effects of LLE and PCA,both of which indicate that LLE can retain the intrinsic structure of the inputs.The composite attributes and clustering results based on LLE better characterize the distribution of sedimentary facies,reservoir,and even reservoir fluids.
基金supported by the Fundamental Research Funds for the Central Universities(No.2016083)
文摘A fault detection method based on incremental locally linear embedding(LLE)is presented to improve fault detecting accuracy for satellites with telemetry data.Since conventional LLE algorithm cannot handle incremental learning,an incremental LLE method is proposed to acquire low-dimensional feature embedded in high-dimensional space.Then,telemetry data of Satellite TX-I are analyzed.Therefore,fault detection are performed by analyzing feature information extracted from the telemetry data with the statistical indexes T2 and squared prediction error(SPE)and SPE.Simulation results verify the fault detection scheme.
基金supported by the National Key Research and Development Program of China(2016YFB0303401)the International(Regional)Cooperation and Exchange Project(61720106008)+1 种基金the National Science Fund for Distinguished Young Scholars(61725301)the Shanghai AI Lab。
文摘Inspired by the tremendous achievements of meta-learning in various fields,this paper proposes the local quadratic embedding learning(LQEL)algorithm for regression problems based on metric learning and neural networks(NNs).First,Mahalanobis metric learning is improved by optimizing the global consistency of the metrics between instances in the input and output space.Then,we further prove that the improved metric learning problem is equivalent to a convex programming problem by relaxing the constraints.Based on the hypothesis of local quadratic interpolation,the algorithm introduces two lightweight NNs;one is used to learn the coefficient matrix in the local quadratic model,and the other is implemented for weight assignment for the prediction results obtained from different local neighbors.Finally,the two sub-mod els are embedded in a unified regression framework,and the parameters are learned by means of a stochastic gradient descent(SGD)algorithm.The proposed algorithm can make full use of the information implied in target labels to find more reliable reference instances.Moreover,it prevents the model degradation caused by sensor drift and unmeasurable variables by modeling variable differences with the LQEL algorithm.Simulation results on multiple benchmark datasets and two practical industrial applications show that the proposed method outperforms several popular regression methods.
基金supported in part by the National Basic Research Program of China(973 Program)(No.2012CB720505)the National Natural Science Foundation of China(No.61273167)
文摘In this paper, a new nonlinear fault detection technique based on locally linear embedding (LLE) is developed. LLE can efficiently compute the low-dimensional embedding of the data with the local neighborhood structure information preserved. In this method, a data-dependent kernel matrix which can reflect the nonlinear data structure is defined. Based on the kernel matrix, the Nystrrm formula makes the mapping extended to the testing data possible. With the kernel view of the LLE, two monitoring statistics are constructed. Together with the out of sample extensions, LLE is used for nonlinear fault detection. Simulation cases were studied to demonstrate the performance of the proposed method.
基金Supported by the National Defense Pre-Research Foundation of China (Grant No.9140A05070107BQ0204)
文摘In this paper,a new multiclass classification algorithm is proposed based on the idea of Locally Linear Embedding(LLE),to avoid the defect of traditional manifold learning algorithms,which can not deal with new sample points.The algorithm defines an error as a criterion by computing a sample's reconstruction weight using LLE.Furthermore,the existence and characteristics of low dimensional manifold in range-profile time-frequency information are explored using manifold learning algorithm,aiming at the problem of target recognition about high range resolution MilliMeter-Wave(MMW) radar.The new algorithm is applied to radar target recognition.The experiment results show the algorithm is efficient.Compared with other classification algorithms,our method improves the recognition precision and the result is not sensitive to input parameters.
基金supported by the National Natural Science Foundation of China(61672482,11626253)the One Hundred Talent Project of the Chinese Academy of Sciences
文摘Color transfer between images uses the statistics information of image effectively. We present a novel approach of local color transfer between images based on the simple statistics and locally linear embedding. A sketching interface is proposed for quickly and easily specifying the color correspondences between target and source image. The user can specify the corre- spondences of local region using scribes, which more accurately transfers the target color to the source image while smoothly preserving the boundaries, and exhibits more natural output results. Our algorithm is not restricted to one-to-one image color transfer and can make use of more than one target images to transfer the color in different regions in the source image. Moreover, our algorithm does not require to choose the same color style and image size between source and target images. We propose the sub-sampling to reduce the computational load. Comparing with other approaches, our algorithm is much better in color blending in the input data. Our approach preserves the other color details in the source image. Various experimental results show that our approach specifies the correspondences of local color region in source and target images. And it expresses the intention of users and generates more actual and natural results of visual effect.
基金This study was financially supported by the National Natural Science Foundation of China(61172127)the Research Fund for the Doctoral Program of Higher Education(KJQN1114)+2 种基金Anhui Provincial Natural Science Foundation(1308085QC58)the 211 Project Youth Scientific Research Fund of Anhui UniversityProvincial Natural Science Foundation of Anhui Universities(KJ2013A026)。
文摘Locally linear embedding(LLE)algorithm has a distinct deficiency in practical application.It requires users to select the neighborhood parameter,k,which denotes the number of nearest neighbors.A new adaptive method is presented based on supervised LLE in this article.A similarity measure is formed by utilizing the Fisher projection distance,and then it is used as a threshold to select k.Different samples will produce different k adaptively according to the density of the data distribution.The method is applied to classify plant leaves.The experimental results show that the average classification rate of this new method is up to 92.4%,which is much better than the results from the traditional LLE and supervised LLE.
基金Supported by the National High Technology Research and Development Programme of China ( No. 2007AA01Z401 ) and the National Natural Science Foundation of China (No. 90718003, 60973027).
文摘In order to achieve failure prediction without manual intervention for distributed systems, a novel failure feature analysis and extraction approach to automate failure prediction is proposed. Compared with the traditional methods which focus on building heuristic rules or models, the autonomic prediction approach analyzes the nonlinear correlation of failure features by recognizing failure patterns. Failure data are sorted according to the nonlinear correlation and failure signature is proposed for autonomic prediction. In addition, the Manifold Learning algorithm named supervised locally linear embedding is applied to achieve feature extraction. Based on the runtime monitoring of failure metrics, the experimental results indicate that the proposed method has better performance in terms of both correlation recognition precision and feature extraction quality and thus it can be used to design efficient autonomic failure prediction for distributed systems.
基金Project supported by the National Natural Science Foundation of China(No.61402310)the Natural Science Foundation of Jiangsu Province,China(No.BK20141195)the State Key Laboratory for Novel Software Technology Foundation of Nanjing University,China(No.KFKT2014B11)
文摘The feature extraction algorithm plays an important role in face recognition. However, the extracted features also have overlapping discriminant information. A property of the statistical uncorrelated criterion is that it eliminates the redundancy among the extracted discriminant features, while many algorithms generally ignore this property. In this paper, we introduce a novel feature extraction method called local uncorrelated local discriminant embedding(LULDE). The proposed approach can be seen as an extension of a local discriminant embedding(LDE)framework in three ways. First, a new local statistical uncorrelated criterion is proposed, which effectively captures the local information of interclass and intraclass. Second, we reconstruct the affinity matrices of an intrinsic graph and a penalty graph, which are mentioned in LDE to enhance the discriminant property. Finally, it overcomes the small-sample-size problem without using principal component analysis to preprocess the original data, which avoids losing some discriminant information. Experimental results on Yale, ORL, Extended Yale B, and FERET databases demonstrate that LULDE outperforms LDE and other representative uncorrelated feature extraction methods.
文摘In the paper, the authors show that any abstract smooth surface can be locally isometricallyembedded into a class of 3-dimensional spaces Nρ0 (ρ0>0) with the non-positively sectionalcurvature being fixed sufficiently small.
基金Project (No 2008AA01Z132) supported by the National High-Tech Research and Development Program of China
文摘Image feature optimization is an important means to deal with high-dimensional image data in image semantic understanding and its applications. We formulate image feature optimization as the establishment of a mapping between highand low-dimensional space via a five-tuple model. Nonlinear dimensionality reduction based on manifold learning provides a feasible way for solving such a problem. We propose a novel globular neighborhood based locally linear embedding (GNLLE) algorithm using neighborhood update and an incremental neighbor search scheme, which not only can handle sparse datasets but also has strong anti-noise capability and good topological stability. Given that the distance measure adopted in nonlinear dimensionality reduction is usually based on pairwise similarity calculation, we also present a globular neighborhood and path clustering based locally linear embedding (GNPCLLE) algorithm based on path-based clustering. Due to its full consideration of correlations between image data, GNPCLLE can eliminate the distortion of the overall topological structure within the dataset on the manifold. Experimental results on two image sets show the effectiveness and efficiency of the proposed algorithms.
基金Acknowledgements This work was supported by the Hi-Tech Research and Development Program of China (2007AA01Z401), the National Natural Science Foundation of China (90718003, 60973027).
文摘This article investigates autonomic failure prediction in large-scale distributed systems with nonlinear dimensionality reduction to automatically extract failure features. Most existing methods for failure prediction focus on building prediction models or heuristic rules by discovering failure patterns, but the process of feature extraction before failure patterns recognition is rarely considered due to the increasing complexity of modern distributed systems. In this work, a novel performance-centric approach to automate failure prediction is proposed based on manifold learning (ML). In addition, the ML algorithm named supervised locally linear embedding (SLLE) is applied to achieve feature extraction. To generalize the dimensionality reduction mapping, the nonlinear mapping approximation and optimization solution is also proposed. In experimental work a file transfer test bed with fault injection is developed which can gather multilevel performance metrics transparently. Based on the runtime monitoring of these metrics, the SLLE method can automatically predict more than 50% of the central processing unit (CPU) and memory failures, and around 70% of the network failure.
基金supported by research funds from Chosun University,2008
文摘Emotions are becoming increasingly important in human-centered interaction architectures. Recognition of facial expressions, which are central to human-computer interactions, seems natural and desirable. However, facial expressions include mixed emotions, continuous rather than discrete, which vary from moment to moment. This paper represents a novel method of recognizing facial expressions of various internal states via manifold learning, to achieve the aim of humancentered interaction studies. A critical review of widely used emotion models is described, then, facial expression features of various internal states via the locally linear embedding (LLE) are extracted. The recognition of facial expressions is created with the pleasure-displeasure and arousal-sleep dimensions in a two-dimensional model of emotion. The recognition result of various internal state expressions that mapped to the embedding space via the LLE algorithm can effectively represent the structural nature of the two-dimensional model of emotion. Therefore our research has established that the relationship between facial expressions of various internal states can be elaborated in the two-dimensional model of emotion, via the locally linear embedding algorithm.
基金This research is supported in part by HKRGC Grant 7017/07P, HKU CRCG Grants, HKU strategic theme grant on computational sciences, HKU Hung Hing Ying Physical Science Research Grant, National Natural Science Foundation of China Grant No. 10971075 and Guangdong Provincial Natural Science Grant No. 9151063101000021. The preliminary version of this paper has been presented in the OSB2009 conference and published in the corresponding conference proceedings[25]. The authors would like to thank the anonymous referees for their helpful comments and suggestions.
文摘Predicting protein functions is an important issue in the post-genomic era. This paper studies several network-based kernels including local linear embedding (LLE) kernel method, diffusion kernel and laplacian kernel to uncover the relationship between proteins functions and protein-protein interactions (PPI). The author first construct kernels based on PPI networks, then apply support vector machine (SVM) techniques to classify proteins into different functional groups. The 5-fold cross validation is then applied to the selected 359 GO terms to compare the performance of different kernels and guilt-by-association methods including neighbor counting methods and Chi-square methods. Finally, the authors conduct predictions of functions of some unknown genes and verify the preciseness of our prediction in part by the information of other data source.
基金supported by the General Research Fund from Research Grant Council of Hong Kong(Project No.CUHK4180/10E)the National Basic Research Program of China(973 Program)(No.2009CB825404).
文摘One paper in a preceding issue of this journal has introduced the Bayesian Ying-Yang(BYY)harmony learning from a perspective of problem solving,parameter learning,and model selection.In a complementary role,the paper provides further insights from another perspective that a co-dimensional matrix pair(shortly co-dim matrix pair)forms a building unit and a hierarchy of such building units sets up the BYY system.The BYY harmony learning is re-examined via exploring the nature of a co-dim matrix pair,which leads to improved learning performance with refined model selection criteria and a modified mechanism that coordinates automatic model selection and sparse learning.Besides updating typical algorithms of factor analysis(FA),binary FA(BFA),binary matrix factorization(BMF),and nonnegative matrix factorization(NMF)to share such a mechanism,we are also led to(a)a new parametrization that embeds a de-noise nature to Gaussian mixture and local FA(LFA);(b)an alternative formulation of graph Laplacian based linear manifold learning;(c)a codecomposition of data and covariance for learning regularization and data integration;and(d)a co-dim matrix pair based generalization of temporal FA and state space model.Moreover,with help of a co-dim matrix pair in Hadamard product,we are led to a semi-supervised formation for regression analysis and a semi-blind learning formation for temporal FA and state space model.Furthermore,we address that these advances provide with new tools for network biology studies,including learning transcriptional regulatory,Protein-Protein Interaction network alignment,and network integration.