辣椒红色素是目前全球销量最大的纯天然可食用色素,培育高辣椒红色素品种为辣椒产业重要任务。通过对255份一年生栽培种辣椒核心种质的辣椒红素含量进行全基因组关联分析(genome-wide association study,GWAS),在第1、2、3、5、6、8、9...辣椒红色素是目前全球销量最大的纯天然可食用色素,培育高辣椒红色素品种为辣椒产业重要任务。通过对255份一年生栽培种辣椒核心种质的辣椒红素含量进行全基因组关联分析(genome-wide association study,GWAS),在第1、2、3、5、6、8、9、10、11和12号染色体均关联到与辣椒红素含量显著相关的区间,关联区间内共包括93个基因,根据功能注释和转录表达数据预测了3个影响辣椒果实中辣椒红素含量的候选基因。通过对高辣椒红色素材料Pep-340、低辣椒红色素材料Pep-276构建的F2群体进行混合分组分析法-测序(bulked segregant analysis-sequencing,BSA-seq)分析,在第1、3、5和10号染色体定位到与辣椒红色素含量相关区间,其中第3和5号染色体上的定位区间与GWAS分析中的显著相关区间相近或重合;利用这两个区间的In Del分子标记,进行遗传连锁分析,将调控辣椒红色素含量基因定位在3号染色体的q CC3.1,物理位置为22.8~25.9 Mb,其中含有99个基因,根据功能注释和转录组分析,预测了4个影响辣椒果实中辣椒红色素含量的候选基因Capana03g001314、Capana03g001325、Capana03g001334和Capana03g001387。研究结果为调控辣椒中辣椒红色素含量基因精细定位及分子标记辅助选择育种奠定基础。展开更多
Gossypium hirsutum L. and G. barbadense L. are the two cultivated tetraploid species of cotton. The first is characterized by a high yield and wide adaptation, and the second by its super fiber property. Substit...Gossypium hirsutum L. and G. barbadense L. are the two cultivated tetraploid species of cotton. The first is characterized by a high yield and wide adaptation, and the second by its super fiber property. Substitution line in which a pair of intact chromosomes of TM_1 ( G. hirsutum ) were replaced by a pair of homozygous chromosomes of 3_79 ( G. barbadense ) is an excellent material for genetic research and molecular tagging. In this study, substitution line 16 (Sub 16) was used to evaluate the performance of the 16th chromosome in G. barbadense in TM_1 background. The genetic analysis using the major gene plus polygene mixed inheritance model in F 2∶3 family revealed that there might exist 2 QTLs respectively for boll size, lint percentage, lint index, fiber length and the first fruit branch node, 1 QTL for fiber elongation and flowering date, and no QTL for seed index, fiber strength and Micronaire in chromosome 16. However, 9 QTLs (LOD (logarithm of odds)≥3.0) controlling 6 quantitative traits were significantly identified in linkage group of chromosome 16 constructed in (TM_1×3_79) F 2by interval mapping. Among them, 1 QTL for boll size, fiber length, flowering date and fiber elongation could explain 15.2%, 19.7%, 12.1%, and 11.7% phenotypic variance respectively, 2 QTLs for lint index could explain 11.6% and 41.9%, and 3 QTLs for lint percentage could explain 8.7%, 9.6% and 29.2% phenotypic variance respectively. One unlinked SSR marker was associated with one QTL respectively for boll size and flowering date and they could explain 1.60% and 4.63% phenotypic variance. The traits associated significantly with chromosome 16 from Sub 16 were boll weight, lint percentage, lint index, fiber length, fiber elongation and flowering days.展开更多
谷子(Setaria italica L.)是我国北方地区重要的粮食作物,籽粒营养丰富,且富含多种类黄酮物质,对生长发育和品质形成发挥着重要作用。目前谷子籽粒类黄酮合成及粒色形成相关调控机制研究较少。分析谷子类黄酮含量及粒色性状相关的QTL,...谷子(Setaria italica L.)是我国北方地区重要的粮食作物,籽粒营养丰富,且富含多种类黄酮物质,对生长发育和品质形成发挥着重要作用。目前谷子籽粒类黄酮合成及粒色形成相关调控机制研究较少。分析谷子类黄酮含量及粒色性状相关的QTL,为类黄酮合成关键基因的精细定位、克隆及功能研究奠定基础,同时,也为揭示谷子类黄酮合成及代谢机制和培育富含类黄酮谷子品种提供技术支撑。本研究以红粒色高类黄酮品种金苗红酒谷和黄粒色低类黄酮品种豫谷28为亲本构建的包含150个家系的重组自交系(RIL)群体为试验材料,在谷子成熟期对籽粒粒色和类黄酮含量相关性状进行分析。同时,采用复合区间作图法(composite interval mapping,CIM)对粒色和类黄酮含量进行QTL定位与分析,并对QTL置信区间内的候选基因进行预测。相关性分析表明,类黄酮含量与粒色呈显著正相关。共定位到4个与类黄酮含量相关和11个与粒色相关的QTL,分别位于1号、2号、5号、6号、7号、8号和9号染色体上,单个QTL的表型贡献率为2.01%~29.25%,6个为主效QTL,其中,qSC1-2和qFLA1-1、qSC7-1和qFLA7-1、qSC9-3和qFLA9-1为2个性状下共同定位到的QTL。通过基因预测与功能注释,筛选出QTL置信区间内5个与类黄酮物质合成及代谢相关的候选基因,表明类黄酮物质的合成、代谢及利用相关基因极有可能控制了这些基因的表达。15个QTL分别聚集于7条染色体上,基于基因功能注释,共筛选了5个与谷子类黄酮合成及代谢相关的候选基因,表明不同QTL位点参与到了共同遗传机制,并可通过分子标记辅助选择进行类黄酮合成及代谢等有利基因的聚合育种。展开更多
文摘Gossypium hirsutum L. and G. barbadense L. are the two cultivated tetraploid species of cotton. The first is characterized by a high yield and wide adaptation, and the second by its super fiber property. Substitution line in which a pair of intact chromosomes of TM_1 ( G. hirsutum ) were replaced by a pair of homozygous chromosomes of 3_79 ( G. barbadense ) is an excellent material for genetic research and molecular tagging. In this study, substitution line 16 (Sub 16) was used to evaluate the performance of the 16th chromosome in G. barbadense in TM_1 background. The genetic analysis using the major gene plus polygene mixed inheritance model in F 2∶3 family revealed that there might exist 2 QTLs respectively for boll size, lint percentage, lint index, fiber length and the first fruit branch node, 1 QTL for fiber elongation and flowering date, and no QTL for seed index, fiber strength and Micronaire in chromosome 16. However, 9 QTLs (LOD (logarithm of odds)≥3.0) controlling 6 quantitative traits were significantly identified in linkage group of chromosome 16 constructed in (TM_1×3_79) F 2by interval mapping. Among them, 1 QTL for boll size, fiber length, flowering date and fiber elongation could explain 15.2%, 19.7%, 12.1%, and 11.7% phenotypic variance respectively, 2 QTLs for lint index could explain 11.6% and 41.9%, and 3 QTLs for lint percentage could explain 8.7%, 9.6% and 29.2% phenotypic variance respectively. One unlinked SSR marker was associated with one QTL respectively for boll size and flowering date and they could explain 1.60% and 4.63% phenotypic variance. The traits associated significantly with chromosome 16 from Sub 16 were boll weight, lint percentage, lint index, fiber length, fiber elongation and flowering days.
文摘谷子(Setaria italica L.)是我国北方地区重要的粮食作物,籽粒营养丰富,且富含多种类黄酮物质,对生长发育和品质形成发挥着重要作用。目前谷子籽粒类黄酮合成及粒色形成相关调控机制研究较少。分析谷子类黄酮含量及粒色性状相关的QTL,为类黄酮合成关键基因的精细定位、克隆及功能研究奠定基础,同时,也为揭示谷子类黄酮合成及代谢机制和培育富含类黄酮谷子品种提供技术支撑。本研究以红粒色高类黄酮品种金苗红酒谷和黄粒色低类黄酮品种豫谷28为亲本构建的包含150个家系的重组自交系(RIL)群体为试验材料,在谷子成熟期对籽粒粒色和类黄酮含量相关性状进行分析。同时,采用复合区间作图法(composite interval mapping,CIM)对粒色和类黄酮含量进行QTL定位与分析,并对QTL置信区间内的候选基因进行预测。相关性分析表明,类黄酮含量与粒色呈显著正相关。共定位到4个与类黄酮含量相关和11个与粒色相关的QTL,分别位于1号、2号、5号、6号、7号、8号和9号染色体上,单个QTL的表型贡献率为2.01%~29.25%,6个为主效QTL,其中,qSC1-2和qFLA1-1、qSC7-1和qFLA7-1、qSC9-3和qFLA9-1为2个性状下共同定位到的QTL。通过基因预测与功能注释,筛选出QTL置信区间内5个与类黄酮物质合成及代谢相关的候选基因,表明类黄酮物质的合成、代谢及利用相关基因极有可能控制了这些基因的表达。15个QTL分别聚集于7条染色体上,基于基因功能注释,共筛选了5个与谷子类黄酮合成及代谢相关的候选基因,表明不同QTL位点参与到了共同遗传机制,并可通过分子标记辅助选择进行类黄酮合成及代谢等有利基因的聚合育种。
