Long non-coding RNAs(lncRNAs) play important roles in response to various biotic and abiotic stresses. So far, systematic identification and characterization of lncRNAs have been reported in a few model plant species ...Long non-coding RNAs(lncRNAs) play important roles in response to various biotic and abiotic stresses. So far, systematic identification and characterization of lncRNAs have been reported in a few model plant species and major crops, but their roles in abiotic stress response have not yet been reported in common wild rice(Oryza rufipogon). Dongxiang wild rice(DXWR) possesses a high degree of drought resistance and has been well recognized as a precious genetic resource for drought resistant rice breeding. We presented the reference catalog of 1 655 novel lncRNA transcripts in DXWR using strand-specific RNA sequencing and bioinformatics approaches. Meanwhile, a total of 1092 lncRNAs were determined as differentially expressed lncRNAs under drought stress. Quantitative real-time PCR results exhibited a high concordance with RNA sequencing data, which confirmed that the expression patterns of lncRNAs based on RNA sequencing were highly reliable. Furthermore, 8 711 transcripts were predicted as target genes of the differentially expressed lncRNAs. Functional annotation analysis based on Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases showed that the target genes were significantly enriched in cellular and metabolic processes, cell part, binding and plant hormone signal transduction, as well as many other terms related to abiotic stress resistance. These results expanded our understanding of lncRNA biology and provided candidate regulators for genetic improvement of drought resistance in rice cultivars.展开更多
From 1990,over 17 years field experiment was carried out in paddy field cultivated from infertile upland to evaluate the response of rice productivity,soil organic carbon(SOC),and total N to long-term NPK fertilizat...From 1990,over 17 years field experiment was carried out in paddy field cultivated from infertile upland to evaluate the response of rice productivity,soil organic carbon(SOC),and total N to long-term NPK fertilization or NPK combined with organic amendments.The field trials included NPK(N,P,K fertilizer),NPKRS(NPK combined with rice straw),NPK2RS(NPK combined with double amount of rice straw),NPKPM(NPK combined with pig manure) and NPKGM(NPK combined with green manure) and the cropping system was rice-rice(Oryza sativa L.) rotation.Annual rice yield,straw biomass,and harvesting index increased steadily with cultivation time in all treatments.Average annual rice yield from 1991 to 2006 was ranged from 7 795 to 8 572 kg ha-1 among treatments.Rice yields in treatments with organic amendments were usually higher than that in treatment with NPK.Contents of SOC and total N also increased gradually in the cultivation years and reached the level of 7.82 to 9.45 and 0.85 to 1.03 g kg-1,respectively,in 2006.Soil fertilities in treatments with chemical fertilization combined with organic amendments were relatively appropriate than those in treatment with NPK.There was obvious discrepancy between cumulative characters of rice yield and soil organic fertility in newly formed paddy field.Compared with relatively high rate of crop productivity improvement,cumulative rates of SOC and total N were much lower in our study.SOC and total N contents were still less than half of those in local highly productive paddy soils after 17 years cultivation in subtropical China.Present work helps to better understand the development of infertile paddy soils and to estimate the potential of yield improvement in this region.展开更多
Carbon sequestration in agricultural soils is a complex process controlled by farming practices, climate and some other environment factors. Since purple soils are unique in China and used as the main cropland in Sich...Carbon sequestration in agricultural soils is a complex process controlled by farming practices, climate and some other environment factors. Since purple soils are unique in China and used as the main cropland in Sichuan Basin of China, it is of great importance to study and understand the impacts of different fertilizer amendments on soil organic carbon(SOC) changes with time. A research was carried out to investigate the relationship between soil carbon sequestration and organic carbon input as affected by different fertilizer treatments at two long-term rice-based cropping system experiments set up in early 1980 s. Each experiment consisted of six identical treatments, including(1) no fertilizer(CK),(2) nitrogen and phosphorus fertilizers(NP),(3) nitrogen, phosphorus and potassium fertilizers(NPK),(4) fresh pig manure(M),(5) nitrogen and phosphorus fertilizers plus manure(MNP), and(6) nitrogen, phosphorus and potassium fertilizers plus manure(MNPK). The results showed that annual harvestable carbon biomass was the highest in the treatment of MNPK, followed by MNP and NPK, then M and NP, and the lowest in CK. Most of fertilizer treatments resulted in a significant gain in SOC ranging from 6.48 to 2 9.13% compared with the CK, and raised soil carbon sequestration rate to 0.10–0.53 t ha–1 yr-1. Especially, addition of manure on the basis of mineral fertilizers was very conducive to SOC maintenance in this soil. SOC content and soil carbon sequestration rate under balanced fertilizer treatments(NPK and MNPK) in the calcareous purple soil(Suining) were higher than that in the acid purple soil(Leshan). But carbon conversion rate at Leshan was 11.00%, almost 1.5 times of that(7.80%) at Suining. Significant linear correlations between soil carbon sequestration and carbon input were observed at both sites, signifying that the purple soil was not carbon-saturated and still had considerable potential to se questrate more carbon.展开更多
Impacts of 33-yr of application of S-containing and Cl-containing chemical fertilizers on rice (Oryza sativa L.) yield and its components were investigated in a red paddy field experiment,south China.The treatments ...Impacts of 33-yr of application of S-containing and Cl-containing chemical fertilizers on rice (Oryza sativa L.) yield and its components were investigated in a red paddy field experiment,south China.The treatments included:1) adding 302 kg SO42--S ha-1 yr-1 with application of (NH4)2SO4-,K2SO4,and calcium superphosphate (SO42-);2) adding 56 kg SO42--S and 176 kg Cl ha-1 yr-1 with application of urea,calcium superphosphate,and KCl (Cl-+SO42-);3) adding 516 kg Cl ha-1 yr-1 with application of NH4Cl,KCl,and KH2PO4 (Cl-).Under each treatment,the applied N,P,and K nutrients were controlled at conventional rates of 150 kg N ha-1 yr-1,75 kg P2O5 ha-1 yr-1,225 kg K2O ha-1 yr-1,respectively.Under the S-containing fertilizer application,soil SO42--S content showed a first increasing then decreasing trend with years,and was significantly negatively correlated with annual rice yield.Average annual yield significantly declined in an order of Cl-,Cl-+SO42-,and SO42-.Under the Cl-treatment,soil SO42--S content was maintained at about 26.5 mg kg-1,not showing deficiency.From 1990 to 2000,rice yield declined rapidly under the SO42- treatment,and was significantly lower than that under the Cltreatment.After then,there was no significant difference in yield among the treatments.Our results demonstrated that long-term application of S- containing fertilizer could result in excessive accumulation of SO42--S in the red paddy soils of south China,therefore producing a certain threat to rice growth.The Cl- containing fertilizer could be relatively safe.展开更多
Ammonia oxidizing (AOB) and denitrifying bacteria (DNB) play an important role in soil nitrogen transformation in natural and agricultural ecosystems. Effects of long-term fertilization on abundance and community ...Ammonia oxidizing (AOB) and denitrifying bacteria (DNB) play an important role in soil nitrogen transformation in natural and agricultural ecosystems. Effects of long-term fertilization on abundance and community composition of AOB and DNB were studied with targeting ammonia monooxygenase (amoA) and nitrite reductase (nirK) genes using polymerase chain reaction- denaturing gradient gel electrophoresis (PCR-DGGE) and real-time PCR, respectively. A field trial with different fertilization treatments in a rice paddy from Tai Lake region, centre East China was used in this study, including no fertilizer application (NF), balanced chemical fertilizers (CF), combined organic/inorganic fertilizer of balanced chemical fertilizers plus pig manure (CFM), and plus rice straw return (CFS). The abundances and riehnesses of amoA and nirK were increased in CF, CFM and CFS compared to NF. Principle component analysis of DGGE profiles showed significant difference in nirK and amoA genes composition between organic amended (CFS and CFM) and the non-organic amended (CF and NF) plots. Number of amoA copies was significantly positively correlated with normalized soil nutrient richness (NSNR) of soil organic carbon (SOC) and total nitrogen (T-N), and that of nirK copies was with NSNR of SOC, T-N plus total phosphorus. Moreover, nitrification potential showed a positive correlation with SOC content, while a significantly lower denitrification potential was found under CFM compared to under CFS. Therefore, SOC accumulation accompanied with soil nutrient richness under long-term balanced and organic/inorganic combined fertilization promoted abundance and diversity of AOB and DNB in the rice paddy.展开更多
In recent years,it has been demonstrated that thelow-level jet streams(LLJs)developed in thesouth of the Meiyu(Baiu)front play a critical role inthe overseas migrations of the planthoppers intoJapan and Korea. However...In recent years,it has been demonstrated that thelow-level jet streams(LLJs)developed in thesouth of the Meiyu(Baiu)front play a critical role inthe overseas migrations of the planthoppers intoJapan and Korea. However, the involement of theLLJs during the process of sequential displacements展开更多
The available literature revealed a gap in reporting the rough rice drying kinetics parameters under isothermal conditions, particularly for Arkansas medium- and long-grain varieties. Therefore, medium-grain (RO170112...The available literature revealed a gap in reporting the rough rice drying kinetics parameters under isothermal conditions, particularly for Arkansas medium- and long-grain varieties. Therefore, medium-grain (RO170112 and Titan) and the long-grain (Diamond and Wells) rough rice varieties were dried under isothermal conditions. The drying process occurred under 40°C, 50°C, 60°C, 70°C, 80°C, 90°C, and 100°C in a system emulating the thermogravimetric analyzer. Drying kinetics models were studied for four well-known models: Page, Newton, Logarithmic, and Henderson & Pabis. The drying kinetics constants were determined for the four studied models. The initial moisture content of rough rice was 28.2% db. Profound moisture reduction was observed during the first three hours of drying, followed by less moisture content reduction. The results showed that at the drying temperature of 100°C and after 6 hours of the drying process, the lowest moisture content reached 13.9% (db) for Titan rough rice. The drying rate of rough rice ranged between 7.41 and 2.01%/h during the first hour of drying under the studied temperature range of 40°C to 100°C. The drying rate was higher with the higher temperature levels during the first three hours. Among all the studied models, the Page, Newton, and Logarithmic models best fit 25%, 25%, and 50% of the twenty-eight studied cases. The challenge that arose from these results led to evolving a mathematical solution by joining the three models in one equation. The combined model showed the best fit for all the studied cases, with R<sup>2</sup> ranging between 0.9999 and 0.9954 for the medium- and long-grain rice varieties. Increasing the drying temperature increased the effective moisture diffusivity values. The highest effective moisture diffusivity of 18.104 × 10<sup>-9</sup> m<sup>2</sup>/s was obtained at the drying temperature of 100°C for medium-grain rice, Titan. The activation energy values ranged between 17.77 and 24.48 kJ/mol for the four rough rice varieties.展开更多
Straw utilization is a key issue related to agricultural production and air pollution control.In this study,a novel extrusion process was proposed to improve the physical and mechanical properties of the straw-reinfor...Straw utilization is a key issue related to agricultural production and air pollution control.In this study,a novel extrusion process was proposed to improve the physical and mechanical properties of the straw-reinforced linear low-density polyethylene(LLDPE)composite.Instead of crushing the straw and mixing it with plastic matrix,the new method mixes straw with plastic matrix in its original form.The intact long rice straws were parallelly spread on the LLDPE film and then rolled up together into a prefabricated roll.The rolls experienced three extrusion processes as follows:(1)twin-screw melting,cooling and crushing,single-screw extruding;(2)twin-screw melting and single-screw extruding;(3)directly single-screw extruding.The testing results showed that the straw/LLDPE composite(with a ratio of 6:4)prepared by Method(2)exhibited optimized properties.Characterization by scanning electron microscopy indicated that the damage to rice straw fibers was relatively minor,the orientation of long fibers was good,and the binding of fibers with the LLDPE matrix was excellent in this case.The results of dynamic mechanical testing(DMA),differential scanning calorimetry(DSC)and thermogravimetric(TG)analysis demonstrated that composites prepared by the new process exhibited significantly improved thermal stability and energy storage modulus,compared with those prepared by conventional processes(e.g.,extruded straw particles/LLDPE composite).The new proposed method yielded significantly enhanced mechanical properties while reducing dust pollution.展开更多
基金supported by the National Natural Science Foundation of China (Grant No. 31660386)the Natural Science Foundation of Jiangxi Province for Distinguished Young Scholars (Grant No. 20171BCB23040)+1 种基金the Foundation of Jiangxi Educational Committee (Grant No. GJJ170193)the Sponsored Program for Distinguished Young Scholars in Jiangxi Normal University, China
文摘Long non-coding RNAs(lncRNAs) play important roles in response to various biotic and abiotic stresses. So far, systematic identification and characterization of lncRNAs have been reported in a few model plant species and major crops, but their roles in abiotic stress response have not yet been reported in common wild rice(Oryza rufipogon). Dongxiang wild rice(DXWR) possesses a high degree of drought resistance and has been well recognized as a precious genetic resource for drought resistant rice breeding. We presented the reference catalog of 1 655 novel lncRNA transcripts in DXWR using strand-specific RNA sequencing and bioinformatics approaches. Meanwhile, a total of 1092 lncRNAs were determined as differentially expressed lncRNAs under drought stress. Quantitative real-time PCR results exhibited a high concordance with RNA sequencing data, which confirmed that the expression patterns of lncRNAs based on RNA sequencing were highly reliable. Furthermore, 8 711 transcripts were predicted as target genes of the differentially expressed lncRNAs. Functional annotation analysis based on Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases showed that the target genes were significantly enriched in cellular and metabolic processes, cell part, binding and plant hormone signal transduction, as well as many other terms related to abiotic stress resistance. These results expanded our understanding of lncRNA biology and provided candidate regulators for genetic improvement of drought resistance in rice cultivars.
基金supported by the National Basic Research Program of China (2007CB109301)the National Natural Science Foundation of China (40871122) the National Key Technology R&D Program of China (2009BADC6B03)
文摘From 1990,over 17 years field experiment was carried out in paddy field cultivated from infertile upland to evaluate the response of rice productivity,soil organic carbon(SOC),and total N to long-term NPK fertilization or NPK combined with organic amendments.The field trials included NPK(N,P,K fertilizer),NPKRS(NPK combined with rice straw),NPK2RS(NPK combined with double amount of rice straw),NPKPM(NPK combined with pig manure) and NPKGM(NPK combined with green manure) and the cropping system was rice-rice(Oryza sativa L.) rotation.Annual rice yield,straw biomass,and harvesting index increased steadily with cultivation time in all treatments.Average annual rice yield from 1991 to 2006 was ranged from 7 795 to 8 572 kg ha-1 among treatments.Rice yields in treatments with organic amendments were usually higher than that in treatment with NPK.Contents of SOC and total N also increased gradually in the cultivation years and reached the level of 7.82 to 9.45 and 0.85 to 1.03 g kg-1,respectively,in 2006.Soil fertilities in treatments with chemical fertilization combined with organic amendments were relatively appropriate than those in treatment with NPK.There was obvious discrepancy between cumulative characters of rice yield and soil organic fertility in newly formed paddy field.Compared with relatively high rate of crop productivity improvement,cumulative rates of SOC and total N were much lower in our study.SOC and total N contents were still less than half of those in local highly productive paddy soils after 17 years cultivation in subtropical China.Present work helps to better understand the development of infertile paddy soils and to estimate the potential of yield improvement in this region.
基金financially supported by the Special Fund for Agro-scientific Research in the Public Interest of China(201203030)the National Natural Science Foundation of China(41201295)+1 种基金the Financial Fund for Young Scholars of Sichuan Academy of Agricultural SciencesChina(2014QNJJ-014)
文摘Carbon sequestration in agricultural soils is a complex process controlled by farming practices, climate and some other environment factors. Since purple soils are unique in China and used as the main cropland in Sichuan Basin of China, it is of great importance to study and understand the impacts of different fertilizer amendments on soil organic carbon(SOC) changes with time. A research was carried out to investigate the relationship between soil carbon sequestration and organic carbon input as affected by different fertilizer treatments at two long-term rice-based cropping system experiments set up in early 1980 s. Each experiment consisted of six identical treatments, including(1) no fertilizer(CK),(2) nitrogen and phosphorus fertilizers(NP),(3) nitrogen, phosphorus and potassium fertilizers(NPK),(4) fresh pig manure(M),(5) nitrogen and phosphorus fertilizers plus manure(MNP), and(6) nitrogen, phosphorus and potassium fertilizers plus manure(MNPK). The results showed that annual harvestable carbon biomass was the highest in the treatment of MNPK, followed by MNP and NPK, then M and NP, and the lowest in CK. Most of fertilizer treatments resulted in a significant gain in SOC ranging from 6.48 to 2 9.13% compared with the CK, and raised soil carbon sequestration rate to 0.10–0.53 t ha–1 yr-1. Especially, addition of manure on the basis of mineral fertilizers was very conducive to SOC maintenance in this soil. SOC content and soil carbon sequestration rate under balanced fertilizer treatments(NPK and MNPK) in the calcareous purple soil(Suining) were higher than that in the acid purple soil(Leshan). But carbon conversion rate at Leshan was 11.00%, almost 1.5 times of that(7.80%) at Suining. Significant linear correlations between soil carbon sequestration and carbon input were observed at both sites, signifying that the purple soil was not carbon-saturated and still had considerable potential to se questrate more carbon.
基金supported by the Central Public-Interest Scientific Institution Basal Research Fund,China (2008-4)the National Key Technologies R&D Program of China (2006BAD05B09,2006BAD02A14)
文摘Impacts of 33-yr of application of S-containing and Cl-containing chemical fertilizers on rice (Oryza sativa L.) yield and its components were investigated in a red paddy field experiment,south China.The treatments included:1) adding 302 kg SO42--S ha-1 yr-1 with application of (NH4)2SO4-,K2SO4,and calcium superphosphate (SO42-);2) adding 56 kg SO42--S and 176 kg Cl ha-1 yr-1 with application of urea,calcium superphosphate,and KCl (Cl-+SO42-);3) adding 516 kg Cl ha-1 yr-1 with application of NH4Cl,KCl,and KH2PO4 (Cl-).Under each treatment,the applied N,P,and K nutrients were controlled at conventional rates of 150 kg N ha-1 yr-1,75 kg P2O5 ha-1 yr-1,225 kg K2O ha-1 yr-1,respectively.Under the S-containing fertilizer application,soil SO42--S content showed a first increasing then decreasing trend with years,and was significantly negatively correlated with annual rice yield.Average annual yield significantly declined in an order of Cl-,Cl-+SO42-,and SO42-.Under the Cl-treatment,soil SO42--S content was maintained at about 26.5 mg kg-1,not showing deficiency.From 1990 to 2000,rice yield declined rapidly under the SO42- treatment,and was significantly lower than that under the Cltreatment.After then,there was no significant difference in yield among the treatments.Our results demonstrated that long-term application of S- containing fertilizer could result in excessive accumulation of SO42--S in the red paddy soils of south China,therefore producing a certain threat to rice growth.The Cl- containing fertilizer could be relatively safe.
基金supported by the National Natural Science Foundation of China(40830528 and 40710019002)
文摘Ammonia oxidizing (AOB) and denitrifying bacteria (DNB) play an important role in soil nitrogen transformation in natural and agricultural ecosystems. Effects of long-term fertilization on abundance and community composition of AOB and DNB were studied with targeting ammonia monooxygenase (amoA) and nitrite reductase (nirK) genes using polymerase chain reaction- denaturing gradient gel electrophoresis (PCR-DGGE) and real-time PCR, respectively. A field trial with different fertilization treatments in a rice paddy from Tai Lake region, centre East China was used in this study, including no fertilizer application (NF), balanced chemical fertilizers (CF), combined organic/inorganic fertilizer of balanced chemical fertilizers plus pig manure (CFM), and plus rice straw return (CFS). The abundances and riehnesses of amoA and nirK were increased in CF, CFM and CFS compared to NF. Principle component analysis of DGGE profiles showed significant difference in nirK and amoA genes composition between organic amended (CFS and CFM) and the non-organic amended (CF and NF) plots. Number of amoA copies was significantly positively correlated with normalized soil nutrient richness (NSNR) of soil organic carbon (SOC) and total nitrogen (T-N), and that of nirK copies was with NSNR of SOC, T-N plus total phosphorus. Moreover, nitrification potential showed a positive correlation with SOC content, while a significantly lower denitrification potential was found under CFM compared to under CFS. Therefore, SOC accumulation accompanied with soil nutrient richness under long-term balanced and organic/inorganic combined fertilization promoted abundance and diversity of AOB and DNB in the rice paddy.
文摘In recent years,it has been demonstrated that thelow-level jet streams(LLJs)developed in thesouth of the Meiyu(Baiu)front play a critical role inthe overseas migrations of the planthoppers intoJapan and Korea. However, the involement of theLLJs during the process of sequential displacements
文摘The available literature revealed a gap in reporting the rough rice drying kinetics parameters under isothermal conditions, particularly for Arkansas medium- and long-grain varieties. Therefore, medium-grain (RO170112 and Titan) and the long-grain (Diamond and Wells) rough rice varieties were dried under isothermal conditions. The drying process occurred under 40°C, 50°C, 60°C, 70°C, 80°C, 90°C, and 100°C in a system emulating the thermogravimetric analyzer. Drying kinetics models were studied for four well-known models: Page, Newton, Logarithmic, and Henderson & Pabis. The drying kinetics constants were determined for the four studied models. The initial moisture content of rough rice was 28.2% db. Profound moisture reduction was observed during the first three hours of drying, followed by less moisture content reduction. The results showed that at the drying temperature of 100°C and after 6 hours of the drying process, the lowest moisture content reached 13.9% (db) for Titan rough rice. The drying rate of rough rice ranged between 7.41 and 2.01%/h during the first hour of drying under the studied temperature range of 40°C to 100°C. The drying rate was higher with the higher temperature levels during the first three hours. Among all the studied models, the Page, Newton, and Logarithmic models best fit 25%, 25%, and 50% of the twenty-eight studied cases. The challenge that arose from these results led to evolving a mathematical solution by joining the three models in one equation. The combined model showed the best fit for all the studied cases, with R<sup>2</sup> ranging between 0.9999 and 0.9954 for the medium- and long-grain rice varieties. Increasing the drying temperature increased the effective moisture diffusivity values. The highest effective moisture diffusivity of 18.104 × 10<sup>-9</sup> m<sup>2</sup>/s was obtained at the drying temperature of 100°C for medium-grain rice, Titan. The activation energy values ranged between 17.77 and 24.48 kJ/mol for the four rough rice varieties.
基金supported by the Natural Science Foundation of China(No.32071704).
文摘Straw utilization is a key issue related to agricultural production and air pollution control.In this study,a novel extrusion process was proposed to improve the physical and mechanical properties of the straw-reinforced linear low-density polyethylene(LLDPE)composite.Instead of crushing the straw and mixing it with plastic matrix,the new method mixes straw with plastic matrix in its original form.The intact long rice straws were parallelly spread on the LLDPE film and then rolled up together into a prefabricated roll.The rolls experienced three extrusion processes as follows:(1)twin-screw melting,cooling and crushing,single-screw extruding;(2)twin-screw melting and single-screw extruding;(3)directly single-screw extruding.The testing results showed that the straw/LLDPE composite(with a ratio of 6:4)prepared by Method(2)exhibited optimized properties.Characterization by scanning electron microscopy indicated that the damage to rice straw fibers was relatively minor,the orientation of long fibers was good,and the binding of fibers with the LLDPE matrix was excellent in this case.The results of dynamic mechanical testing(DMA),differential scanning calorimetry(DSC)and thermogravimetric(TG)analysis demonstrated that composites prepared by the new process exhibited significantly improved thermal stability and energy storage modulus,compared with those prepared by conventional processes(e.g.,extruded straw particles/LLDPE composite).The new proposed method yielded significantly enhanced mechanical properties while reducing dust pollution.