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RNAProbeDesigner:mRNA探针特异性序列搜索方法
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作者 刘子朋 艾观华 +4 位作者 李向真 徐晓燕 张莹 李娟 方慧生 《药物生物技术》 CAS CSCD 2012年第3期251-255,共5页
mRNA不仅是生物体内蛋白质合成的"图纸",还参与生命活动的很多调节过程。随着分子影像技术的发展,mRNA探针在医药领域的应用越来越广泛。探针的特异性是衡量探针效果的重要指标。本文基于BLAST的序列搜索方法,根据目标mRNA中... mRNA不仅是生物体内蛋白质合成的"图纸",还参与生命活动的很多调节过程。随着分子影像技术的发展,mRNA探针在医药领域的应用越来越广泛。探针的特异性是衡量探针效果的重要指标。本文基于BLAST的序列搜索方法,根据目标mRNA中的每个片段与细胞中其他RNA的相似程度,筛选可用于特异性识别mRNA的寡核苷酸片段,并将该方法编写为一套自动化的mRNA探针特异性序列的搜索程序——RNAProbeDesigner。选取4种蛋白的mRNA对该程序进行测试,结果显示,该程序搜索出的片段中,有部分结果在以往的文献中已被报道用于相应探针的设计,从而证明了该方法的可靠性。 展开更多
关键词 mrna探针 BLAST 特异性寡核苷酸 探针设计 探针特异性 特异性打分
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Ⅱ型胶原基因型变化与Legg-perthes病发病的相关性研究 被引量:4
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作者 孟海涛 李林 +3 位作者 王翠苹 曾文超 聂志奎 郭洪敏 《实用骨科杂志》 2015年第2期134-135,共2页
目的使用mRNA探针检测Ⅱ型胶原基因型的变化,酶联免疫吸附法检测血清Ⅱ型胶原抗体浓度,阐明Ⅱ型胶原基因型改变是Legg-perthes病的病因。方法实验选用健康杂种幼犬20只(年龄为2个月,相当于人3.5岁),雌雄不限,采用自身对照方法,任选一... 目的使用mRNA探针检测Ⅱ型胶原基因型的变化,酶联免疫吸附法检测血清Ⅱ型胶原抗体浓度,阐明Ⅱ型胶原基因型改变是Legg-perthes病的病因。方法实验选用健康杂种幼犬20只(年龄为2个月,相当于人3.5岁),雌雄不限,采用自身对照方法,任选一侧髋为实验侧,另一侧作为对照侧,实验侧股骨颈内注射医用TH胶1 m L制作Legg-Perthes病动物模型,对照侧注入生理盐水1 m L。于注胶后4、8、12周时分批处死取材,采用mRNA探针检测Ⅱ型胶原基因型及酶联免疫吸附法检测血清Ⅱ型胶原抗体浓度。结果Ⅱ型胶原基因型及血清Ⅱ型胶原抗体浓度测定发现在第8~12周时实验组与对照组之间均有极显著性差异(P〈0.01)。结论Ⅱ型胶原基因型的改变可能是Legg-perthes病的病因,可能是因为Ⅱ型胶原刺激产生相应抗体发生特异性免疫反应,导致自身免疫攻击,参与Leggperthe病的发病过程。 展开更多
关键词 mrna探针 医用TH胶 幼犬 LEGG-PERTHES病
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Correlation between the gene expression profiles of adenocarcinoma of esophagus and Barrett’s esophagus
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作者 Xuqun Huang Hui Zeng 《The Chinese-German Journal of Clinical Oncology》 CAS 2010年第1期26-30,共5页
Objective: The aim of this study was to investigate the characteristics of gene changes from Barrett's esophagus (BE) to esophageal adenocarcinoma by cDNA microarray. Methods: The cDNA retro-transcribed from equa... Objective: The aim of this study was to investigate the characteristics of gene changes from Barrett's esophagus (BE) to esophageal adenocarcinoma by cDNA microarray. Methods: The cDNA retro-transcribed from equal quantity mRNA from esophageal carcinoma and BE tissues as well as control normal epithelium of esophagus which were from one patient with esophageal adenocarcinoma were labeled with Cy5 and Cy3 fluorescence as probes. The mixed probes were hybridized with two pieces gene chip respectively. It was scanned by laser scanner Scan Array 4000. The acquired images were analyzed by software GenePix Pro 3.0. Results: A total of 214 genes were screened out which expression levels were more than 2 times in hybridization of esophageal adenocarcinoma vs normal epithelium of esophagus, whereas 90 genes in hybridization of BE vs normal epithelium. A parallel comparison among these two gene profiles showed that a total of 45 genes with 24 downregulation and 21 up-regulation which expression levels were more than 2 times between the BE and the esophageal adenocarcinoma. Among these, there were 27 genes with 18 downregulafion and 9 up-regulation which implicated the tendencies progressing from BE to esophageal adenocarcinoma. Conclusion: These genes or their products which implicate the tendencies can be chosen as indicators of carcinogenesis with high risk index for BE. 展开更多
关键词 Barrett's esophagus (BE) esophageal adenocarcinoma gene expression profile
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