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基于生物信息学的糖尿病肾病miRNA-mRNA调控网络构建与分析
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作者 宿家铭 彭景 +1 位作者 郭燕 柳红芳 《中国中西医结合肾病杂志》 2024年第8期707-710,I0007,共5页
目的:基于生物信息学方法识别和构建与糖尿病肾病(DN)相关的miRNA-mRNA调控网络和关键基因。方法:从GEO数据库获取DN相关miRNA和mRNA表达数据集。通过R软件“limma”包筛选差异表达基因;从miRDB、TargetScan7.2、miRtarBase和miRWalk数... 目的:基于生物信息学方法识别和构建与糖尿病肾病(DN)相关的miRNA-mRNA调控网络和关键基因。方法:从GEO数据库获取DN相关miRNA和mRNA表达数据集。通过R软件“limma”包筛选差异表达基因;从miRDB、TargetScan7.2、miRtarBase和miRWalk数据库预测差异miRNA靶点,根据miRNA与mRNA调控关系,用Cytoscape构建miRNA-mRNA调控网络;利用Funrich软件及R/BioConductor对网络内靶点进行富集分析,用STRING筛选关键基因。结果:在DN中共获得83个差异表达miRNA与1164个差异表达mRNA,筛选后得到80个DN相关miRNA-mRNA关系对;对网络基因进一步GO分析主要涉及MAPK失活、钙离子调节、ERK1/2级联调节、MAPK级联负调控等生物过程,KEGG分析主要涉及MAPK信号通路、流体剪切应力与动脉粥样硬化、TNF信号通路、细胞凋亡、IL-17信号通路、糖尿病并发症中AGE-RAGE信号通路、Toll样受体信号通路等,关键基因包括FOS、JUN、VEGFA、DUSP1、EOMES、CCR7、JUNB、VIM、FASLG、DUSP2等。结论:通过生物信息学分析发现DN相关miRNA-mRNA调控网络多途径、多靶点、多方位干预DN的发生与发展,同时为DN的早期诊断和干预治疗提供新的思路。 展开更多
关键词 糖尿病肾病 MIRNA mrna生物信息学
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Function of chloride intracellular channel 1 in gastric cancer cells 被引量:9
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作者 Peng-Fei Ma Jun-Qiang Chen Zhen Wang Jin-Lu Liu Bo-Pei Li 《World Journal of Gastroenterology》 SCIE CAS CSCD 2012年第24期3070-3080,共11页
AIM:To investigate the effect of chloride intracellular channel 1(CLIC1) on the cell proliferation,apoptosis,migration and invasion of gastric cancer cells.METHODS:CLIC1 expression was evaluated in human gastric cance... AIM:To investigate the effect of chloride intracellular channel 1(CLIC1) on the cell proliferation,apoptosis,migration and invasion of gastric cancer cells.METHODS:CLIC1 expression was evaluated in human gastric cancer cell lines SGC-7901 and MGC-803 by real time polymerase chain reaction(RT-PCR).Four segments of small interference RNA(siRNA) targeting CLIC1 mRNA and a no-sense control segment were designed by bioinformatics technology.CLIC1 siRNA was selected using Lipofectamine 2000 and transfected transiently into human gastric cancer SGC-7901 and MGC-803 cells.The transfected efficiency was observed under fluorescence microscope.After transfection,mRNA expression of CLIC1 was detected with RT-PCR and Western blotting was used to detect the protein expression.Proliferation was examined by methyl thiazolyl tetrazolium and apoptosis was detected with flow cytometry.Polycarbonate membrane transwell chamber and Matrigel were used for the detection of the changes of invasion and migration of the two cell lines.RESULTS:In gastric cancer cell lines SGC-7901 and MGC-803,CLIC1 was obviously expressed and CLIC1 siRNA could effectively suppress the expression of CLIC1 protein and mRNA.Proliferation of cells transfected with CLIC1 siRNA3 was enhanced notably,and the highest proliferation rate was 23.3%(P = 0.002) in SGC-7901 and 35.55%(P = 0.001) in MGC-803 cells at 48 h.The G2/M phase proportion increased,while G0/G1 and S phase proportions decreased.The apoptotic rate of the CLIC1 siRNA3 group obviously decreased in both SGC-7901 cells(62.24%,P = 0.000) and MGC-803 cells(52.67%,P = 0.004).Down-regulation of CLIC1 led to the inhibition of invasion and migration by 54.31%(P = 0.000) and 33.62%(P = 0.001) in SGC-7901 and 40.74%(P = 0.000) and 29.26%(P = 0.002) in MGC-803.However,there was no significant difference between the mock group cells and the negative control group cells. 展开更多
关键词 Chloride intracellular channel 1 Gastric car-cinoma Small interference RNA Apoptosis INVASION Migration
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