目的:预测苹果过敏原Mal d 4蛋白B细胞和T细胞抗原表位,探讨Mal d 4蛋白与其同源蛋白之间的交叉反应性。方法:以苹果过敏原Mal d 4蛋白的氨基酸序列为基础,采用生物信息软件HNN预测二级结构;运用DNAStar和Bcepred软件预测其B细胞抗原表...目的:预测苹果过敏原Mal d 4蛋白B细胞和T细胞抗原表位,探讨Mal d 4蛋白与其同源蛋白之间的交叉反应性。方法:以苹果过敏原Mal d 4蛋白的氨基酸序列为基础,采用生物信息软件HNN预测二级结构;运用DNAStar和Bcepred软件预测其B细胞抗原表位,用NetMHCⅡ、NetMHCⅡpan、Syfpeithi及Propred软件综合预测T细胞抗原表位;采用Clustal X1.83、Swiss-Model软件比对同源序列和模拟空间构象。结果:该蛋白二级结构以无规则卷曲为主。B/T细胞共同抗原表位的区域为53～61、85～93。苹果Mal d 4蛋白与桃、芒果、甜樱桃、草莓中的前纤维蛋白氨基酸序列同源性达88%以上,空间构象相似。结论:苹果过敏原Mal d 4蛋白与桃、芒果、甜樱桃和草莓的前纤维蛋白之间可能存在交叉反应,其优势抗原表位区域可能为53～61、85～93,是后续过敏原改造的重点,为继续深入开展苹果过敏原基础性研究提供理论依据。展开更多
A 1 846 bp cDNA is isolated from a human tonsil cell λgt 11 cDNA library (ATCC No. 37546) with mAb 5D4 reactive strongly with human B cell line 3D5, but weakly with human B cell line Daudi and human T cell line Jurka...A 1 846 bp cDNA is isolated from a human tonsil cell λgt 11 cDNA library (ATCC No. 37546) with mAb 5D4 reactive strongly with human B cell line 3D5, but weakly with human B cell line Daudi and human T cell line Jurkat as a probe. RT-PCR also shows a strong reaction in 3D5 cell and a weak reaction in Daudi and Jurkat cell for 5D4 mRNA. There is an open reading frame from 88 to 1 209 bp in 5D4 cDNA encoding a 374 AA protein. Both the Northern blot analysis and the two consecutive stop codens before start coden demonstrate that the cDNA is a full-length cDNA. Secondary structure prediction suggests that there are a region from 295 to 334 AA in the protein with strong hydrophobicity and a transmembrane helix region with high score from 313 to 334 AA with an orientation from the inside to the outside of the cell.展开更多
Background:The complement system plays an important role in the immune response to transplantation,and the diagnostic significance of peritubular capillary(PTC)C4d deposition(C4d+)in grafts is controversial.The study ...Background:The complement system plays an important role in the immune response to transplantation,and the diagnostic significance of peritubular capillary(PTC)C4d deposition(C4d+)in grafts is controversial.The study aimed to fully investigate the risk factors for PTC C4d+and analyze its significance in biopsy pathology of kidney transplantation.Methods:This retrospective study included 124 cases of kidney transplant with graft biopsy and donor-specific antibody(DSA)testing from January 2017 to December 2019 in a single center.The effects of recipient pathological indicators,eplet mismatch(MM),and DSAs on PTC C4d+were examined using univariate and multivariate logistic regression analyses.Results:In total,35/124(28%)were PTC C4d+,including 21 with antibody-mediated rejection(AMR),eight with renal tubular injury,three with T cell-mediated rejection,one with glomerular disease,and two others.Univariate analysis revealed that DSAs(P<0.001),glomerulitis(P<0.001),peritubular capillaritis(P<0.001),and human leukocyte antigen(HLA)B eplet MM(P=0.010)were the influencing factors of PTC C4d+.According to multivariate analysis,DSAs(odds ratio[OR]:9.608,95%confidence interval[CI]:2.742–33.668,P<0.001),glomerulitis(OR:3.581,95%CI:1.246–10.289,P=0.018),and HLA B eplet MM(OR:1.166,95%CI:1.005–1.353,P=0.042)were the independent risk factors for PTC C4d+.In receiver operating characteristic curve analysis,the area under the curve was increased to 0.831 for predicting PTC C4d+when considering glomerulitis,DSAs,and HLA B eplet MM.The proportions of HLA I DSAs and PTC C4d+in active antibody-mediated rejection were 12/17 and 15/17,respectively;the proportions of HLA class II DSAs and PTC C4d+in chronic AMR were 8/12 and 7/12,respectively.Furthermore,the higher the PTC C4d+score was,the more serious the urinary occult blood and proteinuria of recipients at the time of biopsy.Conclusions:PTC C4d+was mainly observed in AMR cases.DSAs,glomerulitis,and HLA B eplet MM are the independent risk factors for PTC C4d+.展开更多
文摘目的:预测苹果过敏原Mal d 4蛋白B细胞和T细胞抗原表位,探讨Mal d 4蛋白与其同源蛋白之间的交叉反应性。方法:以苹果过敏原Mal d 4蛋白的氨基酸序列为基础,采用生物信息软件HNN预测二级结构;运用DNAStar和Bcepred软件预测其B细胞抗原表位,用NetMHCⅡ、NetMHCⅡpan、Syfpeithi及Propred软件综合预测T细胞抗原表位;采用Clustal X1.83、Swiss-Model软件比对同源序列和模拟空间构象。结果:该蛋白二级结构以无规则卷曲为主。B/T细胞共同抗原表位的区域为53～61、85～93。苹果Mal d 4蛋白与桃、芒果、甜樱桃、草莓中的前纤维蛋白氨基酸序列同源性达88%以上,空间构象相似。结论:苹果过敏原Mal d 4蛋白与桃、芒果、甜樱桃和草莓的前纤维蛋白之间可能存在交叉反应,其优势抗原表位区域可能为53～61、85～93,是后续过敏原改造的重点,为继续深入开展苹果过敏原基础性研究提供理论依据。
基金The cDNA sepquence reported in this paper been accessd by GenBank with an accession numbeg FA043290
文摘A 1 846 bp cDNA is isolated from a human tonsil cell λgt 11 cDNA library (ATCC No. 37546) with mAb 5D4 reactive strongly with human B cell line 3D5, but weakly with human B cell line Daudi and human T cell line Jurkat as a probe. RT-PCR also shows a strong reaction in 3D5 cell and a weak reaction in Daudi and Jurkat cell for 5D4 mRNA. There is an open reading frame from 88 to 1 209 bp in 5D4 cDNA encoding a 374 AA protein. Both the Northern blot analysis and the two consecutive stop codens before start coden demonstrate that the cDNA is a full-length cDNA. Secondary structure prediction suggests that there are a region from 295 to 334 AA in the protein with strong hydrophobicity and a transmembrane helix region with high score from 313 to 334 AA with an orientation from the inside to the outside of the cell.
基金the Clinical Research Award of the First Affiliated Hospital of Xi’an Jiaotong University,China(No.XJTU1AF-CRF-2018-026)the Natural Science Foundation of China(No.82070768).
文摘Background:The complement system plays an important role in the immune response to transplantation,and the diagnostic significance of peritubular capillary(PTC)C4d deposition(C4d+)in grafts is controversial.The study aimed to fully investigate the risk factors for PTC C4d+and analyze its significance in biopsy pathology of kidney transplantation.Methods:This retrospective study included 124 cases of kidney transplant with graft biopsy and donor-specific antibody(DSA)testing from January 2017 to December 2019 in a single center.The effects of recipient pathological indicators,eplet mismatch(MM),and DSAs on PTC C4d+were examined using univariate and multivariate logistic regression analyses.Results:In total,35/124(28%)were PTC C4d+,including 21 with antibody-mediated rejection(AMR),eight with renal tubular injury,three with T cell-mediated rejection,one with glomerular disease,and two others.Univariate analysis revealed that DSAs(P<0.001),glomerulitis(P<0.001),peritubular capillaritis(P<0.001),and human leukocyte antigen(HLA)B eplet MM(P=0.010)were the influencing factors of PTC C4d+.According to multivariate analysis,DSAs(odds ratio[OR]:9.608,95%confidence interval[CI]:2.742–33.668,P<0.001),glomerulitis(OR:3.581,95%CI:1.246–10.289,P=0.018),and HLA B eplet MM(OR:1.166,95%CI:1.005–1.353,P=0.042)were the independent risk factors for PTC C4d+.In receiver operating characteristic curve analysis,the area under the curve was increased to 0.831 for predicting PTC C4d+when considering glomerulitis,DSAs,and HLA B eplet MM.The proportions of HLA I DSAs and PTC C4d+in active antibody-mediated rejection were 12/17 and 15/17,respectively;the proportions of HLA class II DSAs and PTC C4d+in chronic AMR were 8/12 and 7/12,respectively.Furthermore,the higher the PTC C4d+score was,the more serious the urinary occult blood and proteinuria of recipients at the time of biopsy.Conclusions:PTC C4d+was mainly observed in AMR cases.DSAs,glomerulitis,and HLA B eplet MM are the independent risk factors for PTC C4d+.
