The role of biocrusts in nitrogen cycling on the tropical reef islands,South China Sea

Harboring polyextremotolerant microbial topsoil communities,biological soil crusts(biocrusts)occur across various climatic zones,and have been well studied in the terrestrial drylands.However,little is known about the functional metabolic potential of microbial communities involved in the biogeochemical processes during the early succession of biocrusts on the tropical reef islands.We collected 26 biocrusts and bare soil samples from the Xisha Islands and Nansha Islands,and applied a functional gene array(GeoChip 5.0)to reveal nitrogen(N)cycling processes involved in these samples.Both physicochemical measurement and enzyme activity assay were utilized to characterize the soil properties.Results revealed the composition of N-cycling functional genes in biocrusts was distinct from that in bare soil.Additionally,microorganisms in biocrusts showed lower functional potential related to ammonification,denitrification,N assimilation,nitrification,N fixation,and dissimilatory nitrate reduction to ammonium compared to bare soils.Although the abundance of nifH gene was lower in biocrusts,nitrogenase activity was significantly higher compared to that in bare soils.Precipitation,soil physicochemical properties(i.e.,soil available copper,soil ammonia N and pH)and soil biological properties(i.e.,β-glucosidase,fluorescein diacetate hydrolase,alkaline protease,urease,alkaline phosphatase,catalase and chlorophyll a)correlated to the N-cycling functional genes structure.Nitrate N and ammonia N were more abundant in biocrusts than bare soil,while pH value was higher in bare soil.Our results suggested biocrusts play an important role in N-cycling in coral sand soil,and will be helpful in understanding the development and ecological functions of biocrusts on tropical reef islands.

Genomic and transcriptomic dissection of Theionarchaea in marine ecosystem

Theionarchaea is a recently described archaeal class within the Euryarchaeota.While it is widely distributed in sediment ecosystems,little is known about its metabolic potential and ecological features.Here,we used metagenomics and metatranscriptomics to characterize 12 theionarchaeal metagenome-assembled genomes,which were further divided into two subgroups,from coastal mangrove sediments of China and seawater columns of the Yap Trench.Genomic analysis revealed that apart from the canonical sulfhydrogenase,Theionarchaea harbor genes encoding heliorhodopsin,group 4[NiFe]-hydrogenase,and flagellin,in which genes for heliorhodopsin and group 4[NiFe]-hydrogenase were transcribed in mangrove sediment.Further,the theionarchaeal substrate spectrum may be broader than previously reported as revealed by metagenomics and metatranscriptomics,and the potential carbon substrates include detrital proteins,hemicellulose,ethanol,and CO_(2).The genes for organic substrate metabolism(mainly detrital protein and amino acid metabolism genes)have relatively higher transcripts in the top sediment layers in mangrove wetlands.In addition,co-occurrence analysis suggested that the degradation of these organic compounds by Theionarchaea might be processed in syntrophy with fermenters(e.g.,Chloroflexi)and methanogens.Collectively,these observations expand the current knowledge of the metabolic potential of Theionarchaea,and shed light on the metabolic strategies and roles of these archaea in the marine ecosystems.

Community structure and elevational diversity patterns of soil Acidobacteria

Acidobacteria is one of the most dominant and abundant phyla in soil,and was believed to have a wide range of metabolic and genetic functions. Relatively little is known about its community structure and elevational diversity patterns. We selected four elevation gradients from 1000 to 2800 m with typical vegetation types of the northern slope of Shennongjia Mountain in central China. The vegetation types were evergreen broadleaved forest,deciduous broadleaved forest,coniferous forest and sub-alpine shrubs. We analyzed the soil acidobacterial community composition,elevational patterns and the relationship between Acidobacteria subdivisions and soil enzyme activities by using the 16 S rRNA meta-sequencing technique and multivariate statistical analysis. The result found that 19 known subdivisions as well as an unclassified phylotype were presented in these forest sites,and Subdivision 6 has the highest number of detectable operational taxonomic units（OTUs）. A significant single peak distribution pattern（P 〈 0.05） between the OTU number and the elevation was observed. The Jaccard and Bray–Curtis index analysis showed that the soil Acidobacteria compositional similarity significantly decreased（P 〈 0.01） with the increase in elevation distance. Mantel test analysis showed the most of the soil Acidobacteria subdivisions had the significant relationship（P 〈 0.01） with different soil enzymes. Therefore,soil Acidobacteria may be involved in different ecosystem functions in global elemental cycles. Partial Mantel tests and CCA analysis showed that soil pH,soil temperature and plant diversity may be the key factors in shaping the soil Acidobacterial community structure.