Heavy metal pollution in agricultural water resources is very serious in re- cent years, resulting in large losses of the agricultural economy and endangering human life and health. Due to the advantages of low cost, ...Heavy metal pollution in agricultural water resources is very serious in re- cent years, resulting in large losses of the agricultural economy and endangering human life and health. Due to the advantages of low cost, high efficiency and less secondary pollution, microbial ramediation technology is widely used in the treatment of heavy metal pollution in agricultural water resources. At present, with the progress of modern biotechnology, microbial remediation of heavy metals in agricul- tural water resources has grown rapidly. The sources and status quo of heavy met- al pollution in agricultural water resources at home and aboard, and the principles of microbial remediation of heavy metals pollution in agricultural water resources were reviewed in this paper, as well as the several common microbial remediation technology of heavy metals in agricultural water resources. Additionally, the further research work of heavy metal contaminated agricultural water resources by microbial ramediation were prospected.展开更多
Microbial pathogens and indicators have contributed to major part of water quality degradation in the United States. Located in the northwestern New Jersey, the Musconetcong River has been included in the New Jersey I...Microbial pathogens and indicators have contributed to major part of water quality degradation in the United States. Located in the northwestern New Jersey, the Musconetcong River has been included in the New Jersey Impaired Waters List or the 303(d) List due to high concentrations of fecal indicator bacteria. Hence, a Total Maximum Daily Load plan was established to address microbial water quality issues in the watershed. The objectives of this study were to assess the current status of microbial water quality and to determine potential sources of fecal contamination in the Musconetcong River Watershed using microbial source tracking techniques. Fifteen sampling events in total were carried out at nine sites throughout the Musconetcong River Watershed in August 2016, July and August 2017. E. coli enumeration was performed to determine the possible presence of fecal contaminations. Microbial source tracking techniques, specifically Canada goose, cow, deer, horse, and human-specific molecular markers, were used for real-time polymerase chain reaction (qPCR) analysis in order to identify and quantify potential sources of fecal contamination. The results indicated that E. coli was found present at all nine study sites. Two of the nine sites violated the New Jersey Surface Water Quality Standards in August 2016, while all of the nine sites exceeded the standards in both July and August 2017. Water temperature, dissolved oxygen (DO), and specific conductance at the study sites ranged from 13.5?C to 25.3?C, from 7.7 mg/L to 13.0 mg/L, and 278.5 μS/cm to 1335.0 μS/cm, respectively, at the time of sample collection. E. coli counts were found to be negatively correlated with temperature and specific conductance (p p < 0.05). Higher percentage of presence of human, Canada goose and deer markers were observed at all fifteen sampling events indicating human and wildlife were the two major sources of fecal contaminations in the Musconetcong River Watershed. The study suggested applying restoration measures to reduce fecal contaminations from anthropogenic and wildlife sources in order to improve microbial water quality of the Musconetcong River. However, more frequent and strategic sampling plan is recommended to supply more comprehensive data to aid in future planning of best management efforts on controlling fecal contaminations.展开更多
The Shenhu gas hydrate drilling area is located in the central Baiyun sag, Zhu I! depression, Pearl River Mouth basin, northern South China Sea. The gas compositions contained in the hydrate-bearing zones is dominated...The Shenhu gas hydrate drilling area is located in the central Baiyun sag, Zhu I! depression, Pearl River Mouth basin, northern South China Sea. The gas compositions contained in the hydrate-bearing zones is dominated by methane with content up to 99.89% and 99.91%. The carbon isotope of the methane (δ^13C1) are -56.7%0. and -60.9%0, and its hydrogen isotope (δD) are -199%0 and -180%0, respectively, indicating the methane from the microbial reduction of CO2. Based on the data of measured seafloor temperature and geothermal gradient, the gas formed hydrate reservoirs are from depths 24-1699 m below the seafloor, and main gas-generation zone is present at the depth interval of 416-1165 m. Gas-bearing zones include the Hanjiang Formation, Yuehai Formation, Wanshan Formation and Quaternary sediments. We infer that the microbial gas migrated laterally or vertically along faults (especially interlayer faults), slump structures, small-scale diapiric structures, regional sand beds and sedimentary boundaries to the hydrate stability zone, and formed natural gas hydrates in the upper Yuehai Formation and lower Wanshan Formation, probably with contribution of a little thermogenic gas from the deep sedments during this process.展开更多
The effects of supplementing 50%of the mineral N fertilizer with organic fertilizer on the metabolism and diversity of soil microbial communities in an oat field were investigated using Biolog-Eco plates.The experimen...The effects of supplementing 50%of the mineral N fertilizer with organic fertilizer on the metabolism and diversity of soil microbial communities in an oat field were investigated using Biolog-Eco plates.The experiment consisted of five treatments:no fertilizer(CK),mineral N fertilizer applied at 90 and 45 kg ha^(-1) N in the form of urea(U1 and U2,respectively),and U2 supplemented with organic fertilizer in the form of sheep manure at 90 and 45 kg ha^(-1) N(U2OM1 and U2OM2,respectively).Each treatment had three replications.The experiment was conducted in 2018 and 2019 in Pinglu District,Shanxi Province,China.The carbon source utilization by soil microbial communities,such as amino acids,amines,carbohydrates,carboxylic acids,and polymers,increased when 50%of the mineral N fertilizer was replaced with organic fertilizer in both years.This result was accompanied by increased richness,dominance,and evenness of the microbial communities.The utilization of amino acid,amine,and carboxylic acid carbon sources and community evenness were further improved when the organic fertilizer amount was doubled in both years.Biplot analysis indicated that amines and amino acids were the most representative of the total carbon source utilization by the soil microbial communities in both years.The highest oat yield was achieved at a total N application rate of 135 kg ha^(-1) in the treatment involving 45 kg ha^(-1) N in the form of urea and 90 kg ha^(-1) N in the form of sheep manure in both years.It was concluded that the application of 50%of the conventional rate of mineral N fertilizer supplemented with an appropriate rate of organic fertilizer enhanced both the functional diversity of soil microbial communities and oat yield.Amine and amino acid carbon sources may be used as a substitute for total carbon sources for assessing total carbon source utilization by soil microbial communities in oat fields in future studies.展开更多
Early childhood caries (ECC) is a considerable pediatric and public health problem worldwide. Preceding studies have focused primarily on bacterial diversity at the taxonomic level. Although these studies have provi...Early childhood caries (ECC) is a considerable pediatric and public health problem worldwide. Preceding studies have focused primarily on bacterial diversity at the taxonomic level. Although these studies have provided significant information regarding the connection between dental caries and oral micmbiomes, further comprehension of this microbial community's ecological relevance is limited. This study identified the carbon source metabolic differences in dental plaque between children with and without ECC. We compared the microbial community functional diversity in 18 caries-free subjects with 18 severe ECC patients based on sole carbon source usage using a Biolog assay. The anaerobic microbial community in the ECC patients displayed greater metabolic activity than that of the control group. Specific carbon source metabolism differed significantly between the two groups. Subjects from the two groups were well distinguished by cluster and principal component analyses based on discriminative carbon sources. Our results implied that the microbial functional diversity between the ECC patients and healthy subjects differed significantly. In addition, the Biolog assay furthered our understanding of oral microbiomes as a composite of functional abilities, thus enabling us to identify the ecologically relevant functional differences among oral microbial communities.展开更多
The effects of different amounts of carbon and nitrogen sources on the soil microbial biomass carbon,dissolved organic carbon and related enzyme activities were studied by the simulation experiment of rice straw retur...The effects of different amounts of carbon and nitrogen sources on the soil microbial biomass carbon,dissolved organic carbon and related enzyme activities were studied by the simulation experiment of rice straw returning to the field,and the mechanism of the decomposition of rice straw returning to the field was discussed.Completely randomized experiment of the two factors of the three levels was designed,and a total of nine treatments of indoor soil incubation tests were conducted.Full amount of rice straw was applied to the soil in this simulation experiment and different amounts of brown sugar and urea were added in the three levels of 0(no carbon source and nitrogen source),1(low levels of carbon and nitrogen sources)and 2(high levels of carbon and nitrogen sources),respectively.The results showed that the addition of different amounts of carbon and nitrogen sources to the rice straw could increase the soil carbon content.Compared with T0N0,the microbial biomass carbon of T2N2 was increased significantly by 170.48%;the dissolved organic carbon content of T1N2 was significantly increased by 58.14%and the free humic acid carbon contents of T0N2,T1N1 and T2N0 were significantly increased by 56.16%and 45.55%and 47.80%,respectively;however,there were no significant differences among those of treatments at later incubation periods.The addition of different carbon and nitrogen sources could promote the soil enzyme activities.During the incubation period,all of the soil enzyme activities of adding sugar and urea were higher than those of T0N0 treatment.Therefore,the addition of different amounts of carbon and nitrogen sources to rice straw returning could improve soil microbial biomass carbon content,dissolved organic carbon and soil enzyme activities.展开更多
The increasingly serious environment pollution has put forward higher and higher requirement for environment monitoring technique,and conventional environment monitoring methods could not satisfy the requirements from...The increasingly serious environment pollution has put forward higher and higher requirement for environment monitoring technique,and conventional environment monitoring methods could not satisfy the requirements from industrial development. Microbial fuel cells( MFCs) could be used for online BOD monitoring,toxicity detection,microbial activity detection and microbial quantity detection,and as power sources for environment monitoring sensors. The technique has the advantages of simple and rapid operation,high sensitivity and good reproducibility,and serve is capable of performing online in-situ monitoring. It is the newest environment monitoring technique,with a broad application prospect. In this paper,the studies and application of MFCs in environment monitoring field were reviewed,and main existing problems were analyzed,so as to provide reference for future study.展开更多
There is a lack of understanding about the bacterial,fungal and archaeal communities’composition of solid-phase denitrification(SPD)systems.We investigated four SPD systems with different carbon sources by analyzing ...There is a lack of understanding about the bacterial,fungal and archaeal communities’composition of solid-phase denitrification(SPD)systems.We investigated four SPD systems with different carbon sources by analyzing microbial gene sequences based on operational taxonomic unit(OTU)and amplicon sequence variant(ASV).The results showed that the corncob-polyvinyl alcohol sodium alginate-polycaprolactone(CPSP,0.86±0.04 mg NO_(3)^(−)-N/(g·day))and corncob(0.85±0.06 mg NO_(3)^(−)-N/(g·day))had better denitrification efficiency than polycaprolactone(PCL,0.29±0.11 mg NO_(3)^(−)-N/(g·day))and polyvinyl alcoholsodium alginate(PVA-SA,0.24±0.07 mg NO_(3)^(−)-N/(g·day)).The bacterial,fungal and archaeal microbial composition was significantly different among carbon source types such as Proteobacteria in PCL(OTU:83.72%,ASV:82.49%)and Rozellomycota in PVA-SA(OTU:71.99%,ASV:81.30%).ASV methods can read more microbial units than that of OTU and exhibit higher alpha diversity and classify some species that had not been identified by OTU such as Nanoarchaeota phylum,unclassified_f_Xanthobacteraceae genus,etc.,indicating ASV may be more conducive to understand SPD microbial communities.The co-occurring network showed some correlation between the bacteria fungi and archaea species,indicating different species may collaborate in SPD systems.Similar KEGG function prediction results were obtained in two bioinformatic methods generally and some fungi and archaea functions should not be ignored in SPD systems.These results may be beneficial for understanding microbial communities in SPD systems.展开更多
This paper studies the electricity generating capacity of microbial fuel cells (MFCs). Unlike most of MFC research, which targets the long term goals of renewable energy production and wastewater treatment, this paper...This paper studies the electricity generating capacity of microbial fuel cells (MFCs). Unlike most of MFC research, which targets the long term goals of renewable energy production and wastewater treatment, this paper considers a niche application that may be used immediately in practice, namely powering sensors from soils or sediments. There are two major goals in this study. The first goal is to examine the performance characteristics of MFCs in this application. Specifically we investigate the relationship between the percentage of organic matter in a sample and the electrical capacity of MFCs fueled by that sample. We observe that higher percentage of organic matter in a sample results in higher electricity production of MFCs powered by that sample. We measure the thermal limits that dictate the temperature range in which MFCs can function, and confirm that the upper thermal limit is 40℃. The new observation is that the lower thermal limit is -5℃, which is lower than 0℃ reported in the literature. This difference is important for powering environmental sensors. We observe that the electricity production of MFCs decreases almost linearly over a period of 10 days. The second goal is to determine the conditions under which MFCs work most efficiently to generate electricity. We compare the capacity under a variety of conditions of sample types (benthic mud, top soil, and marsh samples), temperatures (0℃, 40℃, and room temperature), and sample sizes (measuring 3.5 cm × 3.5 cm × 4.6 cm, 10.2 cm × 10.2 cm × 13.4 cm, and 2.7 cm × 2.7 cm × 3.8 cm), and find that the electricity capacity is greatest at 0℃, powered by benthic mud sample with the largest chamber size. What seems surprising is that 0℃ outperforms both room temperature and benthic mud sample outperforms marsh sample, which appears to be richer in organic matter. In addition, we notice that although the largest chamber size produces the greatest capacity, it suffers from efficiency loss. The reasons of these observations will be explained in the paper. The study demonstrates that the electricity production of MFCs can be increased by selecting the right condition of sample type, temperature, and chamber size.展开更多
This experiment studied the effects of dietary protein sources and levels on the gut health of piglets,p H value,and concentrations of microbial metabolites(ammonia-N,volatile fatty acids [VFA],and polyamines) in the ...This experiment studied the effects of dietary protein sources and levels on the gut health of piglets,p H value,and concentrations of microbial metabolites(ammonia-N,volatile fatty acids [VFA],and polyamines) in the distal colonic and proximal colonic digesta of piglets weaned at 21 d of age.A total of 150 early-weaned piglets were allotted randomly to 5 diets: 1) control diet(CT; 17% CP),2) CT formulated with more soy protein concentrate(SPC19; 19% CP),3) more fish meal(FM19; 19% CP),4) CT formulated with more soy protein concentrate(SPC23; 23% CP),and 5) more fish meal(FM23; 23%CP).Results showed high protein level increased fecal score(P < 0.05),but different protein sources did not(P > 0.05).The p H value and ammonia-N concentration of digesta in the proximal and distal colon of FM23 were significantly higher(P < 0.05) than those of CT.Acetic acid,propionic acid,butyric acid and valeric acid concentrations in the proximal colon of FM23 exceeded those of CT,SPC19,and FM19(P < 0.05);however,isobutyric acid and isovaleric acid were not affected(P > 0.05).Histamine and spermidine concentrations of FM23 were higher than those of other treatments(P < 0.05).Propionic acid and butyric acid concentrations in the distal colon were higher of FM23 than of FM19(P < 0.05); putrescine,histamine and spermidine were higher of FM23 than of LP and FM19(P < 0.05).It was concluded that high dietary CP content increased microbial metabolites(ammonia-N,histamine,putrescine) in colonic digesta and aggravated piglets' diarrhea.展开更多
In this study,raw Arundo donax(A.donax)pieces were applied as carbon source and biofilm carriers for denitrification in a lab-scale moving bed biofilm reactor(MBBR)for the treatment of reverse osmosis concentrate gath...In this study,raw Arundo donax(A.donax)pieces were applied as carbon source and biofilm carriers for denitrification in a lab-scale moving bed biofilm reactor(MBBR)for the treatment of reverse osmosis concentrate gathered from local wastewater reuse plant.At stable phase(about 60 days),efficient denitrification performance was obtained with73.2%±19.5%NO3--N average removal and 8.10±3.45 g N/(m3·day)NO3--N average volumetric removal rate.Mass balance analysis showed that 4.84 g A.donax was required to remove 1 g TN.Quantitative real-time PCR analysis results showed that the copy numbers of 16S r-RNA,narG,nirS,nosZ and anammox gene of carrier biofilm and suspended activated sludge in the declination phase(BF2 and AS2)were lower than those of samples in the stable phase(BF1 and AS1),and relatively higher copy numbers of nirS and nirK genes with lower abundance of narG and nosZ genes were observed.High-throughput sequencing analysis was conducted for BF2 and AS2,and similar dominant phyla and classes with different abundance were obtained.The class Gammaproteobacteria affiliated with the phylum Proteobacteria was the most dominant microbial community in both BF2(52.6%)and AS2(41.7%).The PICRUSt prediction results indicated that 33 predictive specific genes were related to denitrification process,and the relative abundance of 18 predictive specific genes in BF2 were higher than those in AS2.展开更多
The relationship between Solidago canadensis L. invasion and soil microbial communities was studied across the invasive gradients varying from 0 to 40, 80, and 100% coverage of S. canadensis. The results showed both s...The relationship between Solidago canadensis L. invasion and soil microbial communities was studied across the invasive gradients varying from 0 to 40, 80, and 100% coverage of S. canadensis. The results showed both soil microbial biomass C (Cmic) and N (Nmic) increased as the coverage of S. canadensis increased. Soil microbial quotient Cmic/Corg (microbial biomass C/organic C) tended to increase linearly with the coverage of S. canadensis. Soil basal respiration (BR) also showed a similar trend. The soil respiratory quotient qCO2 decreased with S. canadensis invasion, and remained at quite a constantly low level in the invasive soils. Sole carbon source utilization profiles analyses indicated that S. canadensis invasion tended to result in higher microbial functional diversity in the soil. Average utilization of specific substrate guilds was highest in the soil with S. canadensis monoculture. Principle component analysis of sole carbon source utilization profiles further indicated that microbial functional diversity in the soil with S. canadensis monoculture was distinctly separated from those soils in the native area and the ecotones. In conclusion, S. canadensis invasion improved soil microbial biomass, respiration and utilization of carbon sources, and decreased qCO2, thus created better soil conditions, which in turn were more conducive to the growth of S. canadensis.展开更多
●Soil erosion resulted in homogenization of bacterial communities in the watershed.●Microbial community heterogeneity among erosion sites made soil tracing possible.●Assembly process results showed that the trackin...●Soil erosion resulted in homogenization of bacterial communities in the watershed.●Microbial community heterogeneity among erosion sites made soil tracing possible.●Assembly process results showed that the tracking results can achieve high precision.●Dryland was the main source of sediment deposition based on the result of FEAST.Sediment source tracing can accurately provide a theoretical basis for controlling soil erosion effectively,by identifying the most serious types of land use.Traditional sediment tracing methods are based on physical,chemical,biological,and composite fingerprinting,which have not included microbes.As high-throughput sequencing becomes more prevalent,microorganisms can provide more information than what we think.Thus,whether the microorganism can also be used as a special fingerprint factor for sediment source identification during soil erosion,we have tested it by using microbial source tracking tool FEAST to quantify the microbe contribution from five types of eroded land(including dryland,urban,paddy field,forest and grassland)to the depositional areas(Niubitan)in the Yuanjiang basin.The source microbial community in the erosive area was heterogeneous,and assembly process analysis further demonstrated that the source tracking results could reach higher accuracy.The results of FEAST showed that dryland(35.50%),urban(17.21%),paddy field(8.14%),and forest(1.07%)were the major contributors to Niubitan.Our results follow the general soil erosion rules and prove its validity.Taken together,a new perspective is provided by these results for tracing sediment sources in erosion-sedimentary systems.展开更多
In China,pig feces is the predominant source of excrement produced b y animal husbandry.Improper use or direct discharge of pig feces can result in contamination of natural water systems.Microbial source tracking(MST)...In China,pig feces is the predominant source of excrement produced b y animal husbandry.Improper use or direct discharge of pig feces can result in contamination of natural water systems.Microbial source tracking(MST)technology can identify the sources of fecal pollution in environmental water,and contribute to the management of pig fecal pollution by local environmental protection agencies.However,the accuracy of such assays can be context-dependent,and they have not been comprehensively evaluated under Chinese conditions.We aimed to compare the performance of five previously reported nig-specific MST assays(PF,Pig-Bac 1 STBR,Pig-Bac2 SYBR,Pig-1-Bac TaqMan,and Pig-2-Bac TaqMan,which are based on Bacteroidales 16S rRNA gene markers)and apply them in two rivers of North China.We collected a total of 173 fecal samples from pigs,cows,goats,chickens,humans,and horses across China.The PF assay optimized in this study showed outstanding qualitative performance and achieved 100%specificity and sensitivity.However,the two SYBR green qPCR assays(Pig-Bac1 SYBR and Pig-Bac2 SYBR)cross-reacted with most non-pig fecal samples.In contrast,both the Pig-l-Bac TaqMan and Pig-2-Bacr TaqMan assays gave 100%specificity and sensitivity.Of these,the Pig-2-Bac TaqMan assay showed higher reproducibility.Our results regarding the specificity of these pig-specific MST assays differ from those reported in Thailand,Japan,and America.Using the PF and Pig-2-Bac TaqMan assays,a field test comparing the levels of pig fecal pollution in rivers near a pig farm before and after comprehensive environmental pollution governance indicated that pig fecal pollution was effectively controlled at this location.展开更多
文摘Heavy metal pollution in agricultural water resources is very serious in re- cent years, resulting in large losses of the agricultural economy and endangering human life and health. Due to the advantages of low cost, high efficiency and less secondary pollution, microbial ramediation technology is widely used in the treatment of heavy metal pollution in agricultural water resources. At present, with the progress of modern biotechnology, microbial remediation of heavy metals in agricul- tural water resources has grown rapidly. The sources and status quo of heavy met- al pollution in agricultural water resources at home and aboard, and the principles of microbial remediation of heavy metals pollution in agricultural water resources were reviewed in this paper, as well as the several common microbial remediation technology of heavy metals in agricultural water resources. Additionally, the further research work of heavy metal contaminated agricultural water resources by microbial ramediation were prospected.
文摘Microbial pathogens and indicators have contributed to major part of water quality degradation in the United States. Located in the northwestern New Jersey, the Musconetcong River has been included in the New Jersey Impaired Waters List or the 303(d) List due to high concentrations of fecal indicator bacteria. Hence, a Total Maximum Daily Load plan was established to address microbial water quality issues in the watershed. The objectives of this study were to assess the current status of microbial water quality and to determine potential sources of fecal contamination in the Musconetcong River Watershed using microbial source tracking techniques. Fifteen sampling events in total were carried out at nine sites throughout the Musconetcong River Watershed in August 2016, July and August 2017. E. coli enumeration was performed to determine the possible presence of fecal contaminations. Microbial source tracking techniques, specifically Canada goose, cow, deer, horse, and human-specific molecular markers, were used for real-time polymerase chain reaction (qPCR) analysis in order to identify and quantify potential sources of fecal contamination. The results indicated that E. coli was found present at all nine study sites. Two of the nine sites violated the New Jersey Surface Water Quality Standards in August 2016, while all of the nine sites exceeded the standards in both July and August 2017. Water temperature, dissolved oxygen (DO), and specific conductance at the study sites ranged from 13.5?C to 25.3?C, from 7.7 mg/L to 13.0 mg/L, and 278.5 μS/cm to 1335.0 μS/cm, respectively, at the time of sample collection. E. coli counts were found to be negatively correlated with temperature and specific conductance (p p < 0.05). Higher percentage of presence of human, Canada goose and deer markers were observed at all fifteen sampling events indicating human and wildlife were the two major sources of fecal contaminations in the Musconetcong River Watershed. The study suggested applying restoration measures to reduce fecal contaminations from anthropogenic and wildlife sources in order to improve microbial water quality of the Musconetcong River. However, more frequent and strategic sampling plan is recommended to supply more comprehensive data to aid in future planning of best management efforts on controlling fecal contaminations.
基金supported by the National Major Fundamental and Development Project of China (No. 2009CB219501)the National Natural Science Foundation of China (No. 41202099)
文摘The Shenhu gas hydrate drilling area is located in the central Baiyun sag, Zhu I! depression, Pearl River Mouth basin, northern South China Sea. The gas compositions contained in the hydrate-bearing zones is dominated by methane with content up to 99.89% and 99.91%. The carbon isotope of the methane (δ^13C1) are -56.7%0. and -60.9%0, and its hydrogen isotope (δD) are -199%0 and -180%0, respectively, indicating the methane from the microbial reduction of CO2. Based on the data of measured seafloor temperature and geothermal gradient, the gas formed hydrate reservoirs are from depths 24-1699 m below the seafloor, and main gas-generation zone is present at the depth interval of 416-1165 m. Gas-bearing zones include the Hanjiang Formation, Yuehai Formation, Wanshan Formation and Quaternary sediments. We infer that the microbial gas migrated laterally or vertically along faults (especially interlayer faults), slump structures, small-scale diapiric structures, regional sand beds and sedimentary boundaries to the hydrate stability zone, and formed natural gas hydrates in the upper Yuehai Formation and lower Wanshan Formation, probably with contribution of a little thermogenic gas from the deep sedments during this process.
基金This research was supported by the Key Research and Development Program of Shanxi Province,China(201703D211001-03-01 and 201703D211001-03-03)and the Key Research and Development Program of Shanxi Province,China(201903D221061).
文摘The effects of supplementing 50%of the mineral N fertilizer with organic fertilizer on the metabolism and diversity of soil microbial communities in an oat field were investigated using Biolog-Eco plates.The experiment consisted of five treatments:no fertilizer(CK),mineral N fertilizer applied at 90 and 45 kg ha^(-1) N in the form of urea(U1 and U2,respectively),and U2 supplemented with organic fertilizer in the form of sheep manure at 90 and 45 kg ha^(-1) N(U2OM1 and U2OM2,respectively).Each treatment had three replications.The experiment was conducted in 2018 and 2019 in Pinglu District,Shanxi Province,China.The carbon source utilization by soil microbial communities,such as amino acids,amines,carbohydrates,carboxylic acids,and polymers,increased when 50%of the mineral N fertilizer was replaced with organic fertilizer in both years.This result was accompanied by increased richness,dominance,and evenness of the microbial communities.The utilization of amino acid,amine,and carboxylic acid carbon sources and community evenness were further improved when the organic fertilizer amount was doubled in both years.Biplot analysis indicated that amines and amino acids were the most representative of the total carbon source utilization by the soil microbial communities in both years.The highest oat yield was achieved at a total N application rate of 135 kg ha^(-1) in the treatment involving 45 kg ha^(-1) N in the form of urea and 90 kg ha^(-1) N in the form of sheep manure in both years.It was concluded that the application of 50%of the conventional rate of mineral N fertilizer supplemented with an appropriate rate of organic fertilizer enhanced both the functional diversity of soil microbial communities and oat yield.Amine and amino acid carbon sources may be used as a substitute for total carbon sources for assessing total carbon source utilization by soil microbial communities in oat fields in future studies.
基金The National Natural Science Foundation of China(81200762 and 81470769)supported this work
文摘Early childhood caries (ECC) is a considerable pediatric and public health problem worldwide. Preceding studies have focused primarily on bacterial diversity at the taxonomic level. Although these studies have provided significant information regarding the connection between dental caries and oral micmbiomes, further comprehension of this microbial community's ecological relevance is limited. This study identified the carbon source metabolic differences in dental plaque between children with and without ECC. We compared the microbial community functional diversity in 18 caries-free subjects with 18 severe ECC patients based on sole carbon source usage using a Biolog assay. The anaerobic microbial community in the ECC patients displayed greater metabolic activity than that of the control group. Specific carbon source metabolism differed significantly between the two groups. Subjects from the two groups were well distinguished by cluster and principal component analyses based on discriminative carbon sources. Our results implied that the microbial functional diversity between the ECC patients and healthy subjects differed significantly. In addition, the Biolog assay furthered our understanding of oral microbiomes as a composite of functional abilities, thus enabling us to identify the ecologically relevant functional differences among oral microbial communities.
基金Supported by the National Key Research and Development Plan Project(2016YFD0300909-04)。
文摘The effects of different amounts of carbon and nitrogen sources on the soil microbial biomass carbon,dissolved organic carbon and related enzyme activities were studied by the simulation experiment of rice straw returning to the field,and the mechanism of the decomposition of rice straw returning to the field was discussed.Completely randomized experiment of the two factors of the three levels was designed,and a total of nine treatments of indoor soil incubation tests were conducted.Full amount of rice straw was applied to the soil in this simulation experiment and different amounts of brown sugar and urea were added in the three levels of 0(no carbon source and nitrogen source),1(low levels of carbon and nitrogen sources)and 2(high levels of carbon and nitrogen sources),respectively.The results showed that the addition of different amounts of carbon and nitrogen sources to the rice straw could increase the soil carbon content.Compared with T0N0,the microbial biomass carbon of T2N2 was increased significantly by 170.48%;the dissolved organic carbon content of T1N2 was significantly increased by 58.14%and the free humic acid carbon contents of T0N2,T1N1 and T2N0 were significantly increased by 56.16%and 45.55%and 47.80%,respectively;however,there were no significant differences among those of treatments at later incubation periods.The addition of different carbon and nitrogen sources could promote the soil enzyme activities.During the incubation period,all of the soil enzyme activities of adding sugar and urea were higher than those of T0N0 treatment.Therefore,the addition of different amounts of carbon and nitrogen sources to rice straw returning could improve soil microbial biomass carbon content,dissolved organic carbon and soil enzyme activities.
基金Supported by Shandong Higher Education Institution Science and Technology Plan Project(J16LD03)Natural Science Foundation of Shandong Province(ZR2014EEP009)+1 种基金Doctoral Scientific Research Foundation of Binzhou University(2014Y17)Shandong Key Research and Development Plan(2015GNC111018,2016GSF117021)
文摘The increasingly serious environment pollution has put forward higher and higher requirement for environment monitoring technique,and conventional environment monitoring methods could not satisfy the requirements from industrial development. Microbial fuel cells( MFCs) could be used for online BOD monitoring,toxicity detection,microbial activity detection and microbial quantity detection,and as power sources for environment monitoring sensors. The technique has the advantages of simple and rapid operation,high sensitivity and good reproducibility,and serve is capable of performing online in-situ monitoring. It is the newest environment monitoring technique,with a broad application prospect. In this paper,the studies and application of MFCs in environment monitoring field were reviewed,and main existing problems were analyzed,so as to provide reference for future study.
基金Thisworkwas supported by the National Key R&D Program of China(No.2019YFC0408602).
文摘There is a lack of understanding about the bacterial,fungal and archaeal communities’composition of solid-phase denitrification(SPD)systems.We investigated four SPD systems with different carbon sources by analyzing microbial gene sequences based on operational taxonomic unit(OTU)and amplicon sequence variant(ASV).The results showed that the corncob-polyvinyl alcohol sodium alginate-polycaprolactone(CPSP,0.86±0.04 mg NO_(3)^(−)-N/(g·day))and corncob(0.85±0.06 mg NO_(3)^(−)-N/(g·day))had better denitrification efficiency than polycaprolactone(PCL,0.29±0.11 mg NO_(3)^(−)-N/(g·day))and polyvinyl alcoholsodium alginate(PVA-SA,0.24±0.07 mg NO_(3)^(−)-N/(g·day)).The bacterial,fungal and archaeal microbial composition was significantly different among carbon source types such as Proteobacteria in PCL(OTU:83.72%,ASV:82.49%)and Rozellomycota in PVA-SA(OTU:71.99%,ASV:81.30%).ASV methods can read more microbial units than that of OTU and exhibit higher alpha diversity and classify some species that had not been identified by OTU such as Nanoarchaeota phylum,unclassified_f_Xanthobacteraceae genus,etc.,indicating ASV may be more conducive to understand SPD microbial communities.The co-occurring network showed some correlation between the bacteria fungi and archaea species,indicating different species may collaborate in SPD systems.Similar KEGG function prediction results were obtained in two bioinformatic methods generally and some fungi and archaea functions should not be ignored in SPD systems.These results may be beneficial for understanding microbial communities in SPD systems.
文摘This paper studies the electricity generating capacity of microbial fuel cells (MFCs). Unlike most of MFC research, which targets the long term goals of renewable energy production and wastewater treatment, this paper considers a niche application that may be used immediately in practice, namely powering sensors from soils or sediments. There are two major goals in this study. The first goal is to examine the performance characteristics of MFCs in this application. Specifically we investigate the relationship between the percentage of organic matter in a sample and the electrical capacity of MFCs fueled by that sample. We observe that higher percentage of organic matter in a sample results in higher electricity production of MFCs powered by that sample. We measure the thermal limits that dictate the temperature range in which MFCs can function, and confirm that the upper thermal limit is 40℃. The new observation is that the lower thermal limit is -5℃, which is lower than 0℃ reported in the literature. This difference is important for powering environmental sensors. We observe that the electricity production of MFCs decreases almost linearly over a period of 10 days. The second goal is to determine the conditions under which MFCs work most efficiently to generate electricity. We compare the capacity under a variety of conditions of sample types (benthic mud, top soil, and marsh samples), temperatures (0℃, 40℃, and room temperature), and sample sizes (measuring 3.5 cm × 3.5 cm × 4.6 cm, 10.2 cm × 10.2 cm × 13.4 cm, and 2.7 cm × 2.7 cm × 3.8 cm), and find that the electricity capacity is greatest at 0℃, powered by benthic mud sample with the largest chamber size. What seems surprising is that 0℃ outperforms both room temperature and benthic mud sample outperforms marsh sample, which appears to be richer in organic matter. In addition, we notice that although the largest chamber size produces the greatest capacity, it suffers from efficiency loss. The reasons of these observations will be explained in the paper. The study demonstrates that the electricity production of MFCs can be increased by selecting the right condition of sample type, temperature, and chamber size.
基金financially supported by National Basic Research Program of China (NO.2013CB127304 and 2013CB127301)National Science and Technology Support Program (2012BAD39B01-5)+2 种基金Science and Technology Planning Project of Guangdong Province (2013A061401020,2016A020210041)Operating Funds for Guangdong Provincial Key Laboratory of Animal Breeding and Nutrition (2014B030301054)China Agriculture Research System (CARS-36)
文摘This experiment studied the effects of dietary protein sources and levels on the gut health of piglets,p H value,and concentrations of microbial metabolites(ammonia-N,volatile fatty acids [VFA],and polyamines) in the distal colonic and proximal colonic digesta of piglets weaned at 21 d of age.A total of 150 early-weaned piglets were allotted randomly to 5 diets: 1) control diet(CT; 17% CP),2) CT formulated with more soy protein concentrate(SPC19; 19% CP),3) more fish meal(FM19; 19% CP),4) CT formulated with more soy protein concentrate(SPC23; 23% CP),and 5) more fish meal(FM23; 23%CP).Results showed high protein level increased fecal score(P < 0.05),but different protein sources did not(P > 0.05).The p H value and ammonia-N concentration of digesta in the proximal and distal colon of FM23 were significantly higher(P < 0.05) than those of CT.Acetic acid,propionic acid,butyric acid and valeric acid concentrations in the proximal colon of FM23 exceeded those of CT,SPC19,and FM19(P < 0.05);however,isobutyric acid and isovaleric acid were not affected(P > 0.05).Histamine and spermidine concentrations of FM23 were higher than those of other treatments(P < 0.05).Propionic acid and butyric acid concentrations in the distal colon were higher of FM23 than of FM19(P < 0.05); putrescine,histamine and spermidine were higher of FM23 than of LP and FM19(P < 0.05).It was concluded that high dietary CP content increased microbial metabolites(ammonia-N,histamine,putrescine) in colonic digesta and aggravated piglets' diarrhea.
基金supported by the National Major Science and Technology Program for Water Pollution Control and Treatment (Nos. 2017ZX07401003-05-01 2014ZX07216-001)the China Scholarship Council Foundation (No. 2011911098)
文摘In this study,raw Arundo donax(A.donax)pieces were applied as carbon source and biofilm carriers for denitrification in a lab-scale moving bed biofilm reactor(MBBR)for the treatment of reverse osmosis concentrate gathered from local wastewater reuse plant.At stable phase(about 60 days),efficient denitrification performance was obtained with73.2%±19.5%NO3--N average removal and 8.10±3.45 g N/(m3·day)NO3--N average volumetric removal rate.Mass balance analysis showed that 4.84 g A.donax was required to remove 1 g TN.Quantitative real-time PCR analysis results showed that the copy numbers of 16S r-RNA,narG,nirS,nosZ and anammox gene of carrier biofilm and suspended activated sludge in the declination phase(BF2 and AS2)were lower than those of samples in the stable phase(BF1 and AS1),and relatively higher copy numbers of nirS and nirK genes with lower abundance of narG and nosZ genes were observed.High-throughput sequencing analysis was conducted for BF2 and AS2,and similar dominant phyla and classes with different abundance were obtained.The class Gammaproteobacteria affiliated with the phylum Proteobacteria was the most dominant microbial community in both BF2(52.6%)and AS2(41.7%).The PICRUSt prediction results indicated that 33 predictive specific genes were related to denitrification process,and the relative abundance of 18 predictive specific genes in BF2 were higher than those in AS2.
基金supported by the Fundamental Research Funds for the Central Universities of China (2009QNA6015)Foundation of Zhejiang Educational Committee of China (Y200803219)
文摘The relationship between Solidago canadensis L. invasion and soil microbial communities was studied across the invasive gradients varying from 0 to 40, 80, and 100% coverage of S. canadensis. The results showed both soil microbial biomass C (Cmic) and N (Nmic) increased as the coverage of S. canadensis increased. Soil microbial quotient Cmic/Corg (microbial biomass C/organic C) tended to increase linearly with the coverage of S. canadensis. Soil basal respiration (BR) also showed a similar trend. The soil respiratory quotient qCO2 decreased with S. canadensis invasion, and remained at quite a constantly low level in the invasive soils. Sole carbon source utilization profiles analyses indicated that S. canadensis invasion tended to result in higher microbial functional diversity in the soil. Average utilization of specific substrate guilds was highest in the soil with S. canadensis monoculture. Principle component analysis of sole carbon source utilization profiles further indicated that microbial functional diversity in the soil with S. canadensis monoculture was distinctly separated from those soils in the native area and the ecotones. In conclusion, S. canadensis invasion improved soil microbial biomass, respiration and utilization of carbon sources, and decreased qCO2, thus created better soil conditions, which in turn were more conducive to the growth of S. canadensis.
基金The National Natural Science Foundation of China provided funding for this project(U19A2047).
文摘●Soil erosion resulted in homogenization of bacterial communities in the watershed.●Microbial community heterogeneity among erosion sites made soil tracing possible.●Assembly process results showed that the tracking results can achieve high precision.●Dryland was the main source of sediment deposition based on the result of FEAST.Sediment source tracing can accurately provide a theoretical basis for controlling soil erosion effectively,by identifying the most serious types of land use.Traditional sediment tracing methods are based on physical,chemical,biological,and composite fingerprinting,which have not included microbes.As high-throughput sequencing becomes more prevalent,microorganisms can provide more information than what we think.Thus,whether the microorganism can also be used as a special fingerprint factor for sediment source identification during soil erosion,we have tested it by using microbial source tracking tool FEAST to quantify the microbe contribution from five types of eroded land(including dryland,urban,paddy field,forest and grassland)to the depositional areas(Niubitan)in the Yuanjiang basin.The source microbial community in the erosive area was heterogeneous,and assembly process analysis further demonstrated that the source tracking results could reach higher accuracy.The results of FEAST showed that dryland(35.50%),urban(17.21%),paddy field(8.14%),and forest(1.07%)were the major contributors to Niubitan.Our results follow the general soil erosion rules and prove its validity.Taken together,a new perspective is provided by these results for tracing sediment sources in erosion-sedimentary systems.
基金This work was supported by the National Key Research and Development Program of China(No.2016YFC0503601)Excellent Young Teachers'Scientific Research Ability Improvement Project of University of Chinese Academy of Sciences(No.Y95401FXX2).
文摘In China,pig feces is the predominant source of excrement produced b y animal husbandry.Improper use or direct discharge of pig feces can result in contamination of natural water systems.Microbial source tracking(MST)technology can identify the sources of fecal pollution in environmental water,and contribute to the management of pig fecal pollution by local environmental protection agencies.However,the accuracy of such assays can be context-dependent,and they have not been comprehensively evaluated under Chinese conditions.We aimed to compare the performance of five previously reported nig-specific MST assays(PF,Pig-Bac 1 STBR,Pig-Bac2 SYBR,Pig-1-Bac TaqMan,and Pig-2-Bac TaqMan,which are based on Bacteroidales 16S rRNA gene markers)and apply them in two rivers of North China.We collected a total of 173 fecal samples from pigs,cows,goats,chickens,humans,and horses across China.The PF assay optimized in this study showed outstanding qualitative performance and achieved 100%specificity and sensitivity.However,the two SYBR green qPCR assays(Pig-Bac1 SYBR and Pig-Bac2 SYBR)cross-reacted with most non-pig fecal samples.In contrast,both the Pig-l-Bac TaqMan and Pig-2-Bacr TaqMan assays gave 100%specificity and sensitivity.Of these,the Pig-2-Bac TaqMan assay showed higher reproducibility.Our results regarding the specificity of these pig-specific MST assays differ from those reported in Thailand,Japan,and America.Using the PF and Pig-2-Bac TaqMan assays,a field test comparing the levels of pig fecal pollution in rivers near a pig farm before and after comprehensive environmental pollution governance indicated that pig fecal pollution was effectively controlled at this location.