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庆阳驴mtDNA D-loop区遗传多样性及起源分析
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作者 施海娜 王永杰 +5 位作者 梁万鹏 耿智广 李世恩 徐振飞 刘刚 刘哲 《中国畜牧兽医》 CAS CSCD 北大核心 2024年第2期601-613,共13页
[目的]研究庆阳驴养殖群体的遗传多样性与母系起源,了解其遗传信息,为保护庆阳驴种质资源、选育和遗传改良工作提供理论依据。[方法]随机选取133头庆阳驴,对其线粒体DNA(mitochondrial DNA,mtDNA)D-loop区序列进行PCR扩增、测序及比对,... [目的]研究庆阳驴养殖群体的遗传多样性与母系起源,了解其遗传信息,为保护庆阳驴种质资源、选育和遗传改良工作提供理论依据。[方法]随机选取133头庆阳驴,对其线粒体DNA(mitochondrial DNA,mtDNA)D-loop区序列进行PCR扩增、测序及比对,并探讨庆阳驴的遗传多样性与母系起源。[结果]在获得的520 bp D-loop碱基序列中,AT含量(57.3%)高于GC含量(42.8%),表现出碱基的偏倚性;检测到38个变异位点,包含8个碱基对的转换;其核苷酸多样性(Pi)、单倍型多样性(Hd)、平均核苷酸差异(K)分别为0.01591、0.895和8.274,与欧洲家驴和中国家驴研究的平均值相比较低,说明该驴品种核苷酸变异较为贫乏。庆阳驴mtDNA D-loop区存在35个单倍型,单倍型之间的遗传距离为0.002~0.042。系统进化结果显示,庆阳驴存在2个线粒体支系,表明其具有2个母系起源,且遗传距离表明,庆阳驴与克罗地亚家驴之间的遗传距离较近。[结论]本研究从分子水平初步揭示庆阳驴核苷酸变异比较贫乏,杂交程度高,mtDNA遗传多态性正逐步丧失,应加强庆阳驴品种的遗传资源保护工作。 展开更多
关键词 庆阳驴 MTDNA d-loop 遗传多样性 起源
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Elaidic acid leads to mitochondrial dysfunction via mitochondria-associated membranes triggers disruption of mitochondrial calcium fluxes 被引量:1
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作者 Hui Liu Xuenan Li +4 位作者 Ziyue Wang Lu Li Yucai Li Haiyang Yan Yuan Yuan 《Food Science and Human Wellness》 SCIE CSCD 2024年第1期287-298,共12页
Elaidic acid(EA)stimulation can lead to endoplasmic reticulum stress(ERS),accompanied by a large release of Ca^(2+),and ultimately the activation of NLRP3 inflammasome in Kupffer cells(KCs).Mitochondrial instability o... Elaidic acid(EA)stimulation can lead to endoplasmic reticulum stress(ERS),accompanied by a large release of Ca^(2+),and ultimately the activation of NLRP3 inflammasome in Kupffer cells(KCs).Mitochondrial instability or dysfunction may be the key stimulating factors to activate NLRP3 inflammasome,and sustained Ca^(2+)transfer can result in mitochondrial dysfunction.We focused on KCs to explore the damage to mitochondria by EA.After EA stimulation,cells produced an oxidative stress(OS)response with a significant increase in ROS release.Immunoprecipitation experiments and the addition of inhibitors revealed that the increase in the level of intracellular Ca^(2+)led to Ca^(2+)accumulation in the mitochondrial matrix via mitochondria-associated membranes(MAMs).This was accompanied by a significant release of m ROS,loss of MMP and ATP,and a significant increase in mitochondrial permeability transition pore opening,ultimately leading to mitochondrial instability.These findings confirmed the mechanism that EA induced mitochondrial Ca^(2+)imbalance in KCs via MAM,ultimately leading to mitochondrial dysfunction.Meanwhile,EA induced OS and the decrease of MMP and ATP in rat liver,and significant lesions were found in liver mitochondria.Swelling of the inner mitochondrial cristae and mitochondrial vacuolization occurred,with a marked increase in lipid droplets. 展开更多
关键词 Elaidic acid(EA) mitochondria-associated membranes(MAMs) Calcium Endoplasmic reticulum mitochondria dysfunction
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建水黄褐鸭线粒体D-loop区遗传多样性分析
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作者 李昕鹏 展亚楠 +4 位作者 信爱国 黄艳 黄合特 张雪伟 孔小艳 《安徽农业科学》 CAS 2024年第2期83-86,共4页
[目的]了解建水黄褐鸭系统发育、遗传分化和遗传多样性。[方法]选取18只建水黄褐鸭、4只北京鸭、6只揭阳鸭和6只克里莫M18,利用PCR技术对其mtDNA D-loop区序列进行扩增,结合NCBI部分野鸭和家鸭序列,利用MEGA、DNAsp、Arlequin软件进行... [目的]了解建水黄褐鸭系统发育、遗传分化和遗传多样性。[方法]选取18只建水黄褐鸭、4只北京鸭、6只揭阳鸭和6只克里莫M18,利用PCR技术对其mtDNA D-loop区序列进行扩增,结合NCBI部分野鸭和家鸭序列,利用MEGA、DNAsp、Arlequin软件进行聚类分析、遗传分化和遗传多样性分析。[结果]建水黄褐鸭与绿头鸭及斑嘴鸭2种野鸭亲缘关系更近;遗传分化指数和遗传距离均以建水黄褐鸭和北京鸭之间最大;建水黄褐鸭、北京鸭、揭阳鸭和克里莫M18这4个群体中建水黄褐鸭群体遗传多样性最低。[结论]建水黄褐鸭可能有绿头鸭和斑嘴鸭2个母系起源;建水黄褐鸭群体遗传多样性偏低,为今后更好地利用地方畜禽资源,应采取相应措施保护其遗传多样性。 展开更多
关键词 建水黄褐鸭 d-loop 遗传分化 遗传距离 遗传多样性
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Erlotinib combination with a mitochondria-targeted ubiquinone effectively suppresses pancreatic cancer cell survival
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作者 Pui-Yin Leung Wenjing Chen +4 位作者 Anissa N Sari Poojitha Sitaram Pui-Kei Wu Susan Tsai Jong-In Park 《World Journal of Gastroenterology》 SCIE CAS 2024年第7期714-726,共13页
BACKGROUND Pancreatic cancer is a leading cause of cancer-related deaths.Increased activity of the epidermal growth factor receptor(EGFR)is often observed in pancreatic cancer,and the small molecule EGFR inhibitor erl... BACKGROUND Pancreatic cancer is a leading cause of cancer-related deaths.Increased activity of the epidermal growth factor receptor(EGFR)is often observed in pancreatic cancer,and the small molecule EGFR inhibitor erlotinib has been approved for pancreatic cancer therapy by the food and drug administration.Nevertheless,erlotinib alone is ineffective and should be combined with other drugs to improve therapeutic outcomes.We previously showed that certain receptor tyrosine kinase inhibitors can increase mitochondrial membrane potential(Δψm),facilitate tumor cell uptake ofΔψm-sensitive agents,disrupt mitochondrial homeostasis,and subsequently trigger tumor cell death.Erlotinib has not been tested for this effect.AIM To determine whether erlotinib can elevateΔψm and increase tumor cell uptake ofΔψm-sensitive agents,subsequently triggering tumor cell death.METHODSΔψm-sensitive fluorescent dye was used to determine how erlotinib affectsΔψm in pancreatic adenocarcinoma(PDAC)cell lines.The viability of conventional and patient-derived primary PDAC cell lines in 2D-and 3D cultures was measured after treating cells sequentially with erlotinib and mitochondria-targeted ubiquinone(MitoQ),aΔψm-sensitive MitoQ.The synergy between erlotinib and MitoQ was then analyzed using SynergyFinder 2.0.The preclinical efficacy of the twodrug combination was determined using immune-compromised nude mice bearing PDAC cell line xenografts.RESULTS Erlotinib elevatedΔψm in PDAC cells,facilitating tumor cell uptake and mitochondrial enrichment ofΔψm-sensitive agents.MitoQ triggered caspase-dependent apoptosis in PDAC cells in culture if used at high doses,while erlotinib pretreatment potentiated low doses of MitoQ.SynergyFinder suggested that these drugs synergistically induced tumor cell lethality.Consistent with in vitro data,erlotinib and MitoQ combination suppressed human PDAC cell line xenografts in mice more effectively than single treatments of each agent.CONCLUSION Our findings suggest that a combination of erlotinib and MitoQ has the potential to suppress pancreatic tumor cell viability effectively. 展开更多
关键词 Pancreatic cancer ERLOTINIB mitochondria-targeted ubiquinone mitochondria Combination therapy
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Extracellular Vesicles from Mesenchymal Stromal Cells (imEVs) Improve Cold Preservation of Isolated Mitochondria
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作者 Xianpeng Jiang Sergey Rodin +3 位作者 Ken Braesch-Andersen Catherine C. Baucom Karl-Henrik Grinnemo Brent Segal 《Journal of Biosciences and Medicines》 2024年第1期52-63,共12页
Mitochondrial organelle transplantation (MOT) is an innovative strategy for the treatment of mitochondrial dysfunction such as cardiac ischemic reperfusion injuries, Parkinson’s diseases, brain and spinal cord injuri... Mitochondrial organelle transplantation (MOT) is an innovative strategy for the treatment of mitochondrial dysfunction such as cardiac ischemic reperfusion injuries, Parkinson’s diseases, brain and spinal cord injuries, and amyotrophic lateral sclerosis (ALS). However, one of the major challenges for widespread usage is a methodology for preservation of isolated mitochondria. Extracellular vesicles (EVs) are phospholipid bilayer-enclosed vesicles released from cells. EVs carry a cargo of proteins, nucleic acids, lipids, metabolites, and even organelles such as mitochondria. Purpose: To test if EVs enhance the stability of isolated mitochondria. Methods: We mixed isolated mitochondria of fibroblasts with EVs of mesenchymal stromal cells (imEVs) (9:1 in volume) and stored the mixture at 2°C - 6°C for different time periods. We measured morphology, mitochondrial membrane potential (MMP) and mitochondrial ATP content at 0, 2, 5 days. Key findings: After 2 days of storage, the mito-chondria without imEVs lost approximate 70% MMP (RFU: 1822 ± 68), compared to the fresh mitochondria (RFU: 5458 ± 52) (p 0.05). In agreement with MMP, mitochondria without imEVs lost significant mitochondrial ATP content (p 0.05), after 2 days of cold storage, compared to fresh mitochondria. Microscopy showed that imEVs promoted aggregation of isolated mitochondria. Summary: The preliminary data showed that imEVs enhanced the stability of isolated mitochondria in cold storage. 展开更多
关键词 mitochondria Extracellular Vesicles mitochondrial Preservation MOT imEVs
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Verteporfin fluorescence in antineoplastic-treated pancreatic cancer cells found concentrated in mitochondria
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作者 Ying-Qiao Zhang Qing-Hao Liu +3 位作者 Lu Liu Peng-Yu Guo Run-Ze Wang Zhi-Chang Ba 《World Journal of Gastrointestinal Oncology》 SCIE 2024年第3期968-978,共11页
BACKGROUND Traditional treatments for pancreatic cancer(PC)are inadequate.Photodynamic therapy(PDT)is non-invasive,and proven safe to kill cancer cells,including PC.However,the mitochondrial concentration of the photo... BACKGROUND Traditional treatments for pancreatic cancer(PC)are inadequate.Photodynamic therapy(PDT)is non-invasive,and proven safe to kill cancer cells,including PC.However,the mitochondrial concentration of the photosensitizer,such as verteporfin,is key.AIM To investigate the distribution of fluorescence of verteporfin in PC cells treated with antitumor drugs,post-PDT.METHODS Workable survival rates of PC cells(AsPC-1,BxPC-3)were determined with chemotherapy[doxorubicin(DOX)and gemcitabine(GEM)]and non-chemotherapy[sirolimus(SRL)and cetuximab(CTX)]drugs in vitro,with or without verteporfin,as measured via MTT,flow cytometry,and laser confocal microscopy.Reduced cell proliferation was associated with GEM that was more enduring compared with DOX.Confocal laser microscopy allowed observation of GEM-and verteporfin-treated PC cells co-stained with 4’,6-diamidino-2-phenylindole and MitoTracker Green to differentiate living and dead cells and subcellular localization of verteporfin,respectively.RESULTS Cell survival significantly dropped upon exposure to either chemotherapy drug,but not to SRL or CTX.Both cell lines responded similarly to GEM.The intensity of fluorescence was associated with the concentration of verteporfin.Additional experiments using GEM showed that survival rates of the PC cells treated with 10μmol/L verteporfin(but not less)were significantly lower relative to nil verte-porfin.Living and dead stained cells treated with GEM were distinguishable.After GEM treatment,verteporfin was observed primarily in the mitochondria.CONCLUSION Verteporfin was observed in living cells.In GEM-treated human PC cells,verteporfin was particularly prevalent in the mitochondria.This study supports further study of PDT for the treatment of PC after neoadjuvant chemotherapy. 展开更多
关键词 Photodynamic therapy Pancreatic cancer VERTEPORFIN mitochondria CHEMOTHERAPY GEMCITABINE
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Vitamin A regulates mitochondrial biogenesis and function through p38 MAPK‑PGC‑1α signaling pathway and alters the muscle fiber composition of sheep
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作者 Pengkang Song Jiamin Zhao +5 位作者 Fanqinyu Li Xiaoyi Zhao Jinxin Feng Yuan Su Bo Wang Junxing Zhao 《Journal of Animal Science and Biotechnology》 SCIE CAS CSCD 2024年第2期898-910,共13页
Background Vitamin A(VA)and its metabolite,retinoic acid(RA),are of great interest for their wide range of physiological functions.However,the regulatory contribution of VA to mitochondrial and muscle fiber compositio... Background Vitamin A(VA)and its metabolite,retinoic acid(RA),are of great interest for their wide range of physiological functions.However,the regulatory contribution of VA to mitochondrial and muscle fiber composition in sheep has not been reported.Method Lambs were injected with 0(control)or 7,500 IU VA palmitate into the biceps femoris muscle on d 2 after birth.At the age of 3 and 32 weeks,longissimus dorsi(LD)muscle samples were obtained to explore the effect of VA on myofiber type composition.In vitro,we investigated the effects of RA on myofiber type composition and intrinsic mechanisms.Results The proportion of type I myofiber was greatly increased in VA-treated sheep in LD muscle at harvest.VA greatly promoted mitochondrial biogenesis and function in LD muscle of sheep.Further exploration revealed that VA elevated PGC-1αmRNA and protein contents,and enhanced the level of p38 MAPK phosphorylation in LD muscle of sheep.In addition,the number of type I myofibers with RA treatment was significantly increased,and type IIx myofibers was significantly decreased in primary myoblasts.Consistent with in vivo experiment,RA significantly improved mitochondrial biogenesis and function in primary myoblasts of sheep.We then used si-PGC-1αto inhibit PGC-1αexpression and found that si-PGC-1αsignificantly abrogated RA-induced the formation of type I myofibers,mitochondrial biogenesis,MitoTracker staining intensity,UQCRC1 and ATP5A1 expression,SDH activity,and enhanced the level of type IIx muscle fibers.These data suggested that RA improved mitochondrial biogenesis and function by promoting PGC-1αexpression,and increased type I myofibers.In order to prove that the effect of RA on the level of PGC-1αis caused by p38 MAPK signaling,we inhibited the p38 MAPK signaling using a p38 MAPK inhibitor,which significantly reduced RA-induced PGC-1αand MyHC I levels.Conclusion VA promoted PGC-1αexpression through the p38 MAPK signaling pathway,improved mitochondrial biogenesis,and altered the composition of muscle fiber type. 展开更多
关键词 mitochondria Muscle fiber type PGC-1Α p38 MAPK Retinoic acid Vitamin A
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Mitochondrial dysfunction affects hepatic immune and metabolic remodeling in patients with hepatitis B virus-related acute-onchronic liver failure
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作者 Yu Zhang Xiao-Ling Tian +3 位作者 Jie-Qun Li Dong-Sheng Wu Qiang Li Bin Chen 《World Journal of Gastroenterology》 SCIE CAS 2024年第8期881-900,共20页
BACKGROUND Immune dysregulation and metabolic derangement have been recognized as key factors that contribute to the progression of hepatitis B virus(HBV)-related acute-on-chronic liver failure(ACLF).However,the mecha... BACKGROUND Immune dysregulation and metabolic derangement have been recognized as key factors that contribute to the progression of hepatitis B virus(HBV)-related acute-on-chronic liver failure(ACLF).However,the mechanisms underlying immune and metabolic derangement in patients with advanced HBV-ACLF are unclear.AIM To identify the bioenergetic alterations in the liver of patients with HBV-ACLF causing hepatic immune dysregulation and metabolic disorders.METHODS Liver samples were collected from 16 healthy donors(HDs)and 17 advanced HBV-ACLF patients who were eligible for liver transplantation.The mitochondrial ultrastructure,metabolic characteristics,and immune microenvironment of the liver were assessed.More focus was given to organic acid metabolism as well as the function and subpopulations of macrophages in patients with HBV-ACLF.RESULTS Compared with HDs,there was extensive hepatocyte necrosis,immune cell infiltration,and ductular reaction in patients with ACLF.In patients,the liver suffered severe hypoxia,as evidenced by increased expression of hypoxia-inducible factor-1α.Swollen mitochondria and cristae were observed in the liver of patients.The number,length,width,and area of mitochondria were adaptively increased in hepatocytes.Targeted metabolomics analysis revealed that mitochondrial oxidative phosphorylation decreased,while anaerobic glycolysis was enhanced in patients with HBV-ACLF.These findings suggested that,to a greater extent,hepa-tocytes used the extra-mitochondrial glycolytic pathway as an energy source.Patients with HBV-ACLF had elevated levels of chemokine C-C motif ligand 2 in the liver homogenate,which stimulates peripheral monocyte infiltration into the liver.Characterization and functional analysis of macrophage subsets revealed that patients with ACLF had a high abundance of CD68^(+)HLA-DR^(+)macrophages and elevated levels of both interleukin-1βand transforming growth factor-β1 in their livers.The abundance of CD206^(+)CD163^(+)macrophages and expression of interleukin-10 decreased.The correlation analysis revealed that hepatic organic acid metabolites were closely associated with macrophage-derived cytokines/chemokines.CONCLUSION The results indicated that bioenergetic alteration driven by hypoxia and mitochondrial dysfunction affects hepatic immune and metabolic remodeling,leading to advanced HBV-ACLF.These findings highlight a new therapeutic target for improving the treatment of HBV-ACLF. 展开更多
关键词 Acute-on-chronic liver failure Hypoxia-inducible factor-1α mitochondria Metabolic phenotype Immune cells
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Mitochondrial dysfunction in type 2 diabetes:A neglected path to skeletal muscle atrophy
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作者 Jian-Jun Wu Hui-Min Xian +1 位作者 Da-Wei Yang Fan Yang 《World Journal of Orthopedics》 2024年第2期101-104,共4页
Over the course of several decades,robust research has firmly established the significance of mitochondrial pathology as a central contributor to the onset of skeletal muscle atrophy in individuals with diabetes.Howev... Over the course of several decades,robust research has firmly established the significance of mitochondrial pathology as a central contributor to the onset of skeletal muscle atrophy in individuals with diabetes.However,the specific intricacies governing this process remain elusive.Extensive evidence highlights that individuals with diabetes regularly confront the severe consequences of skeletal muscle degradation.Deciphering the sophisticated mechanisms at the core of this pathology requires a thorough and meticulous exploration into the nuanced factors intricately associated with mitochondrial dysfunction. 展开更多
关键词 Mfn-2 Oxidative stress mitochondria metabolism Skeletal muscle atrophy DIABETES
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Progress of mitochondrial and endoplasmic reticulum-associated signaling and its regulation of chronic liver disease by Chinese medicine
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作者 Yang Zheng Yi-Hui Zheng +3 位作者 Jia-Hui Wang Tie-Jian Zhao Lei Wang Tian-Jian Liang 《World Journal of Hepatology》 2024年第4期494-505,共12页
The endoplasmic reticulum(ER)is connected to mitochondria through mitochondria-associated ER membranes(MAMs).MAMs provide a framework for crosstalk between the ER and mitochondria,playing a crucial role in regulating ... The endoplasmic reticulum(ER)is connected to mitochondria through mitochondria-associated ER membranes(MAMs).MAMs provide a framework for crosstalk between the ER and mitochondria,playing a crucial role in regulating cellular calcium balance,lipid metabolism,and cell death.Dysregulation of MAMs is involved in the development of chronic liver disease(CLD).In CLD,changes in MAMs structure and function occur due to factors such as cellular stress,inflammation,and oxidative stress,leading to abnormal interactions between mitochondria and the ER,resulting in liver cell injury,fibrosis,and impaired liver function.Traditional Chinese medicine has shown some research progress in regulating MAMs signaling and treating CLD.This paper reviews the literature on the association between mitochondria and the ER,as well as the intervention of traditional Chinese medicine in regulating CLD. 展开更多
关键词 mitochondria Endoplasmic reticulum mitochondria-associated ER membranes Traditional Chinese medicine Chronic liver disease
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基于线粒体DNAD-loop全序列的麒麟鸡遗传多样性研究 被引量:1
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作者 李威娜 郭美慧 +4 位作者 温锦添 翁茁先 陈洁波 杜炳旺 黄勋和 《广东农业科学》 CAS 2023年第4期100-107,共8页
【目的】从线粒体DNA(mtDNA)D-loop全序列角度评估麒麟鸡的遗传多样性水平,以期阐明麒麟鸡的品种形成。【方法】通过PCR产物直接测序法对麒麟鸡保种群的黄羽、白羽和黑羽3个资源群及8个地方鸡品种进行mtDNA D-loop全序列测定,分析遗传变... 【目的】从线粒体DNA(mtDNA)D-loop全序列角度评估麒麟鸡的遗传多样性水平,以期阐明麒麟鸡的品种形成。【方法】通过PCR产物直接测序法对麒麟鸡保种群的黄羽、白羽和黑羽3个资源群及8个地方鸡品种进行mtDNA D-loop全序列测定,分析遗传变异,并进行中性检测,构建单倍型中介网络图,探究麒麟鸡的群体历史。【结果】麒麟鸡mtDNAD-loop全序列为1231~1232bp,C+G含量(39.8%)低于T+A含量(60.2%),总体核苷酸多样性为0.00630±0.00054,明显高于其他8个地方鸡品种。3个资源群黄羽、白羽和黑羽麒麟鸡的单倍型多样性分别为0.777±0.076、0.816±0.060、0.710±0.057,核苷酸多样性分别为0.00699±0.00115、0.00662±0.00090、0.00546±0.00062,遗传多样性水平基本上与群体规模呈正相关。麒麟鸡与8个地方鸡的双参数遗传距离为0.008~0.009,净遗传距离为0.003~0.005,均大于其他地方鸡之间的遗传距离。90份麒麟鸡样本共检测到45个突变位点,定义了17个单倍型,其中独享型单倍型9个,单倍型多样性为0.773±0.039。黄羽、白羽和黑羽麒麟鸡的单倍型数量分别为12、7、5个。8个地方鸡品种定义了19个单倍型,其中河田鸡的单倍型数量最多(8个),宁都黄鸡的最少(3个),没有与麒麟鸡共享的单倍型。中性检测结果显示,除了黑羽麒麟鸡外,供试鸡种在品种水平上近期均未经历明显的种群扩张。麒麟鸡单倍型类群主要分布在进化枝A、B、C和E,优势单倍型类群是B(30.0%)和E(64.4%);8个地方鸡单倍型类群主要为A和B。【结论】独特的单倍型提示麒麟鸡具有独立的品种形成历史,相对较高的遗传多样性水平将有利于其保护和利用工作的开展。 展开更多
关键词 麒麟鸡 线粒体DNA(mtDNA) d-loop全序列 遗传多样性 系统进化
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苏姜猪mtDNA D-loop序列的遗传多样性分析 被引量:1
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作者 韩大勇 周春宝 +2 位作者 倪黎纲 陈章言 赵锦明 《中国畜牧兽医》 CAS CSCD 北大核心 2023年第4期1472-1479,共8页
【目的】通过对苏姜猪线粒体DNA(mtDNA)D-loop高变区Ⅰ的序列扩增测序,探究苏姜猪种群的种质资源特性和遗传多样性。【方法】采集苏姜猪核心群100头经产母猪耳组织,提取DNA后扩增苏姜猪核心群母猪mtDNA D-loop高变区Ⅰ的基因片段并测序... 【目的】通过对苏姜猪线粒体DNA(mtDNA)D-loop高变区Ⅰ的序列扩增测序,探究苏姜猪种群的种质资源特性和遗传多样性。【方法】采集苏姜猪核心群100头经产母猪耳组织,提取DNA后扩增苏姜猪核心群母猪mtDNA D-loop高变区Ⅰ的基因片段并测序,运用NCBI在线BLAST对测序序列与参考序列进行比对、校正并寻找同源序列,确定mtDNA D-loop高变区Ⅰ序列的长度和位置;使用DnaSP v.5.10.1软件统计获得群体中核苷酸多态位点和变异位点数量,分析单倍型多样度(Hd)、核苷酸多样性(Pi)、平均核苷酸差异度(K)等参数;使用Mega 7.0软件对不同单倍型进行基于Kimura’s 2-prarmetermodel的遗传距离计算,采用邻接法(Neighbor-Joining,NJ)对苏姜猪的4个单倍型、17个中国地方猪种、欧洲家猪(登录号:AF034253.1)的mtDNA D-loop高变区Ⅰ序列构建系统发育树。【结果】对100头苏姜猪的mtDNA D-loop序列高变区Ⅰ进行扩增测序,获得长度为429 bp的有效序列,获得的序列中,AT含量为63.1%,GC含量为36.9%;中性检验Tajima’s D值为-1.80517(P<0.05),证实苏姜猪种群显著性偏离中性检验;被测序列中检测到19个变异位点,定义了4个单倍型,单倍型多样度为0.578,核苷酸多样性为0.0032;种群内4个单倍型之间的平均遗传距离在0.004~0.031之间。系统发育树结果显示,群体分为国内和国外2个类群,苏姜猪4个单倍型都聚集在国内分支上,其中单倍型H2和二花脸猪聚为一类,单倍型H4和姜曲海、皖南花猪等聚为一类。【结论】苏姜猪种群mtDNA D-loop高变区Ⅰ多态位点比例高,单倍型多样度高,核苷酸多样性低;苏姜猪群体内优势单倍型的遗传距离较近,占比较高,反映出苏姜猪群体母系来源较少。 展开更多
关键词 苏姜猪 线粒体DNA d-loop 遗传变异 单倍型多样度 核苷酸多样性
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基于线粒体D-loop区序列的4个黄尾鲴养殖群体遗传多样性分析
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作者 刘士力 陈大伟 +5 位作者 郑建波 程顺 蒋文枰 迟美丽 夏冯博 李飞 《广东农业科学》 CAS 2023年第11期139-145,共7页
【目的】黄尾鲴(Xenocypris davidi)是以腐殖质、有机碎屑为饵料,兼食浮游生物和底栖动物的的淡水经济鱼类,是浙江省自然水域鱼类增殖放流的主要品种之一。了解人工繁育对黄尾鲴遗传多样性的影响,可为自然水域黄尾鲴的增殖放流策略设计... 【目的】黄尾鲴(Xenocypris davidi)是以腐殖质、有机碎屑为饵料,兼食浮游生物和底栖动物的的淡水经济鱼类,是浙江省自然水域鱼类增殖放流的主要品种之一。了解人工繁育对黄尾鲴遗传多样性的影响,可为自然水域黄尾鲴的增殖放流策略设计和实施提供参考。【方法】对浙江长兴、八里店、双浦和湖南醴陵4个黄尾鲴养殖群体的线粒体DNA(mtDNA)D-loop序列进行PCR扩增和测序,通过序列分析研究4个群体的遗传多样性。【结果】黄尾鲴线粒体D-loop序列长度为1038~1093 bp,碱基A+T含量(65.3%)显著高于C+G含量(34.7%),平均转换/颠换比值(TS/TV)为4.6。在128条黄尾鲴的D-loop序列中共检测到101个变异位点,包括97个简约信息位点;界定了19种单倍型,其中长兴、双浦、八里店和醴陵群体的单倍型数目分别为5、12、4和2;单倍型多样性(h)介于0.226~0.915之间,核苷酸多样性(π)介于0.00640~0.01433之间。4个黄尾鲴养殖群体的遗传多样性具有一定差异,不同养殖群体间遗传距离为0.03782~0.88756,遗传分化系数为0.78903(P<0.01),群体内变异占整个遗传变异的21.10%,其中长兴群体和八里店群体的遗传分化系数最低,双浦和醴陵群体的遗传分化系数最高,遗传变异主要发生在群体间。【结论】4个黄尾鲴养殖群体的遗传多样性具有一定差异。黄尾鲴遗传变异和种群结构的信息可为其遗传多样性变化的研究提供参考,有助于黄尾鲴的资源保护。 展开更多
关键词 黄尾鲴 线粒体DNA(mtDNA) d-loop序列 遗传多样性 遗传结构
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线粒体DNA D-Loop区突变与弱精症的相关性
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作者 陈孟权 单婷婷 +1 位作者 黄蕊 孔万仲 《温州医科大学学报》 CAS 2023年第12期969-973,979,共6页
目的:探讨精子线粒体DNAD-Loop区基因突变和弱精症的相关性。方法:收集2019年7月至2021年3月温州市中医院诊治的134例弱精症患者(弱精症组)和129例同期健康男性(对照组)的精液,提取精子细胞DNA,采用聚合酶链反应(PCR)对线粒体DNA D-Loo... 目的:探讨精子线粒体DNAD-Loop区基因突变和弱精症的相关性。方法:收集2019年7月至2021年3月温州市中医院诊治的134例弱精症患者(弱精症组)和129例同期健康男性(对照组)的精液,提取精子细胞DNA,采用聚合酶链反应(PCR)对线粒体DNA D-Loop区进行扩增并测序,测序结果与剑桥标准序列(r CRS)进行比对,分析弱精症患者精子细胞线粒体DNA D-Loop区的基因突变情况。结果:两组中发生率>5%的突变有62种,大部分位于HV-1区和HV-2区(87.78%),突变类型以替换突变为主(87.03%)。分析显示,有11种突变在弱精症组和对照组之间的差异有统计学意义(P<0.05),这些突变可能增加或降低弱精症风险。结论:精子线粒体DNA D-Loop区具有较高突变率,可能在弱精症发生发展中发挥重要作用。 展开更多
关键词 弱精症 线粒体DNA d-loop 突变
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基于线粒体Cytb基因和D-loop区的鸭绿江流域细鳞鱼群体遗传多样性
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作者 王丹丹 宋洁 +1 位作者 王旭 乐海梅 《西北农业学报》 CAS CSCD 北大核心 2023年第11期1675-1685,共11页
旨在研究鸭绿江流域(丹东段)细鳞鱼野生群体与养殖群体的遗传多样性,并探究其种质资源情况。基于细鳞鱼线粒体DNA Cytb基因和D-loop区序列,对宽甸(KD)和丹东江域(DD)2个野生细鳞鱼群体和1个养殖群体的遗传结构与遗传多样性等进行比较研... 旨在研究鸭绿江流域(丹东段)细鳞鱼野生群体与养殖群体的遗传多样性,并探究其种质资源情况。基于细鳞鱼线粒体DNA Cytb基因和D-loop区序列,对宽甸(KD)和丹东江域(DD)2个野生细鳞鱼群体和1个养殖群体的遗传结构与遗传多样性等进行比较研究。结果表明:Cytb基因1141 bp,A+T含量53.55%,G+C含量46.45%,D-loop区序列988 bp,A+T含量62.75%,G+C含量37.25%;基于Cytb和D-loop序列在90个样本中分别检测到42和56个多态性位点,定义了21和26种单倍型,其中KD、DD和YZ群体Cytb基因的单倍型数分别为14、10和7,KD、DD和YZ群体D-loop区单倍型数分别为16、15和10;遗传多样性分析Cytb基因表现出高单倍型多样性(0.986)和低核苷酸多样性(0.00466),而D-loop区表现出高单倍型多样性(0.981)和高水平的核苷酸多样性(0.01982),基于Cytb基因和D-loop区序列KD和DD群体分别具有4个和2个相同单倍型,说明2个细鳞鱼野生群体间的分化程度较小,而养殖群体与野生群体间遗传分化为中度;分子方差分析(AMOVA)发现群体内部的遗传变异(Cytb:73.38%;D-loop:85.91%)占比明显高于群体间的遗传变异(Cytb:26.62%;D-loop:14.09%),表明鸭绿江流域(丹东段)细鳞鱼群体遗传变异主要来源于群体内,不同地理群体间的遗传变异不大;群体单倍型系统发育树表明,KD、DD和YZ群体间互有交叉,均未表现出明显的地理聚集,3个群体间尚未出现明显的地理谱系结构,结果与遗传多样性研究一致。Tajima’s D和Fu and Li’s中性检验显著偏离中性,推测细鳞鱼KD和DD群体可能经历过群体扩张事件,随后处于相对平衡稳定状态。 展开更多
关键词 鸭绿江流域 细鳞鱼 CYTB基因 d-loop 群体遗传多样性
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Mutation in D-loop region of mitochondrial DNA in gastric cancer and its significance 被引量:5
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作者 Yi-BingZhao Hong-YuYang Xi-WeiZhang Guo-YuChen 《World Journal of Gastroenterology》 SCIE CAS CSCD 2005年第21期3304-3306,共3页
AIM: lo investigate the mutation in D-loop region of mitochondrial DNA in gastric cancer and its influence on the changes of reactive oxygen species (ROS) and cell cycle. METHODS: The D-loop region was amplified by PC... AIM: lo investigate the mutation in D-loop region of mitochondrial DNA in gastric cancer and its influence on the changes of reactive oxygen species (ROS) and cell cycle. METHODS: The D-loop region was amplified by PCR and sequenced. Reactive oxygen species and cell cycle were detected by flow cytometry in 20 specimens from gastriccancer and adjacent normal tissues. According to the sequence results, gastric cancer tissue was divided into mutation group and control group. Reactive oxygen species, apoptosis and proliferation in the two groups were compared.RESULTS: Among the 20 gastric cancer specimens, 18 mutations were identified in 7 patients, the mutation rate being 35%. There were four microsatellite instabilities in the mutations. No mutation was found in the adjacent tissues. Reactive oxygen species, apoptosis, and proliferation in the mutation group were all significantly higher than those in control group.CONCLUSION: Mutation in D-loop region plays a role in the genesis and development of gastric cancer. 展开更多
关键词 d-loop 基因突变 DNA 胃癌 病理机制
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皖南牛mtDNA D-loop区遗传多样性和系统进化分析
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作者 刘洪瑜 朱一笑 +4 位作者 邱孝青 方立华 吉倩昀 何志勇 张运海 《阜阳师范大学学报(自然科学版)》 2023年第1期13-18,共6页
采用DNA提取及PCR扩增技术,对30头皖南母牛的mtDNA D-loop区的全序列进行扩增与分析。利用Genbank数据库,下载国内外部分黄牛品种mtDNA D-loop区的全序列,再使用Clustalx、Dnasp5.0等生物软件,对其全序列进行比对和对单倍型多样度、核... 采用DNA提取及PCR扩增技术,对30头皖南母牛的mtDNA D-loop区的全序列进行扩增与分析。利用Genbank数据库,下载国内外部分黄牛品种mtDNA D-loop区的全序列,再使用Clustalx、Dnasp5.0等生物软件,对其全序列进行比对和对单倍型多样度、核苷酸多样度等展开分析。皖南牛mtDNA D-loop区序列长度均在962~1052 bp的区间内,共发现68个变异位点,其中单一信息位点共有18个,简约信息位点共有50个。构成13种单倍型,其单倍型多样性(Hd)的均值为0.6483,核苷酸多样性(Pi)的均值为0.0131,其序列之间核苷酸的差异平均数(k)为11.589,A、C、G、T碱基含量平均占比分别为33.26%,25.23%,13.39%,28.12%。通过遗传距离和N-J系统进化树得知,皖南牛和威宁黄牛、湘西牛、大别山牛和吉安黄牛亲缘关系较近。皖南牛的遗传多样性和群体变异程度较低。研究结果可为皖南牛遗传资源的保护开发提供科学依据和理论参考。 展开更多
关键词 皖南牛 MTDNA d-loop 遗传多样性 遗传距离
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基于线粒体COI和D-loop序列的黑龙江流域蛇[鱼句]种群遗传结构分析 被引量:1
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作者 胡宗云 杨培民 +1 位作者 宋红梅 牟希东 《淡水渔业》 CSCD 北大核心 2023年第2期12-20,共9页
以线粒体COI和D-loop序列为分子标记,基于88个样本研究了黑龙江流域3个蛇[鱼句](Saurogobio dabryi)种群的遗传多样性和遗传结构。结果表明,比对剪切后的COI和D-loop序列长度分别为582~583 b、834~583 b,基于COI序列总体的单倍型多样性(... 以线粒体COI和D-loop序列为分子标记,基于88个样本研究了黑龙江流域3个蛇[鱼句](Saurogobio dabryi)种群的遗传多样性和遗传结构。结果表明,比对剪切后的COI和D-loop序列长度分别为582~583 b、834~583 b,基于COI序列总体的单倍型多样性(0.377 3)略低于基于D-loop序列的单倍型多样性(0.577 0),但基于两个序列总体的核苷酸多样性指数相等,且仅有0.000 9。群体间遗传距离分别为0.000 9(COI)和0.000 9~0.001 0(D-loop),群体间遗传分化指数分别为-0.004 9~0.007 6(COI)和-0.002 8~0.011 4(D-loop),遗传分化均不显著(P>0.05)。分子方差分析(AMOVA)显示,群体内遗传变异占总变异的100.02%(COI)和99.49%(D-loop),总的遗传变异主要源自群体内。单倍型系统发育树和TCS网络图表明,所有的单倍型随机地聚集在一起,没有形成明显的地理格局。中性检验和核苷酸错配分析显示,3个蛇[鱼句]群体历史上发生过种群扩张事件。综上,3个蛇[鱼句]群体遗传多样性水平相对较低,群体间没有显著的遗传分化,可以将3个群体视为一个遗传管理单元。这些发现将丰富蛇[鱼句]现有的遗传信息,并为制定黑龙江流域蛇[鱼句]资源保护策略提供参考。 展开更多
关键词 蛇[鱼句](Saurogobio dabryi) COI d-loop 遗传多样性 遗传结构
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Mitochondrial D-loop diversity of grasscutter (<i>Thryonomys swinderianus</i>Rodentia: Hystricomorpha) in Ghana 被引量:1
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作者 Christopher Adenyo Azusa Hayano +2 位作者 Boniface B. Kayang Erasmus H. Owusu Miho Inoue-Murayama 《Open Journal of Animal Sciences》 2013年第3期145-153,共9页
Attempts are being made to domesticate the grasscutter (Thryonomys swinderianus) for commercial production in Sub-Saharan Africa to cater for the protein needs of the people and to satisfy the craving for bushmeat, th... Attempts are being made to domesticate the grasscutter (Thryonomys swinderianus) for commercial production in Sub-Saharan Africa to cater for the protein needs of the people and to satisfy the craving for bushmeat, thereby reducing habitat destruction through hunting. The objective of this study was to determine the genetic diversity of grasscutter populations in Ghana. DNA was extracted from roots of hair samples collected from 84 grasscutters from three agro-ecological zones in Ghana, namely Guinea Savanna (n = 17), Forest (n = 22), and Coastal Savanna (n = 45). Mitochondrial D-loop was sequenced and the diversity was determined across the zones. Out of 26 haplotypes found, 15 were obtained from Guinea Savanna, 7 from Forest and 13 from Coastal Savanna. Haplotype diversities were 0.978, 0.853 and 0.875 respectively for Guinea Savanna, Forest and Coastal Savanna zones. Analysis of molecular variance (AMOVA) revealed significant differentiation between Forest and Savanna populations (FST = 0.14, p 0.05). Network analysis indicated two clusters, one of which consisted of only Savanna haplotypes. Population neutrality tests showed that Forest and Coastal Savanna populations had been stable while the Guinea Savanna zone population had undergone an expansion (Fu’s FS = ‐7.132, 展开更多
关键词 Agro-Ecological ZONES RODENT d-loop Genetic Variation Thryonomys swinderianus
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玉龙雪山乌鸡mtDNA D-loop区遗传多样性分析 被引量:1
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作者 柳岚 段婕 +4 位作者 胡瑀 朱柯源 和永芳 和岳琪 苗永旺 《中国家禽》 北大核心 2023年第9期14-19,共6页
为阐明玉龙雪山乌鸡的遗传背景信息,试验采用线粒体DNA D-loop区序列为遗传标记,对采自核心产区的55只玉龙雪山乌鸡样品进行群体变异检测,并将所得数据与已发表的云南12个地方鸡种数据进行联合分析。结果显示:在所有个体中共检测到25个... 为阐明玉龙雪山乌鸡的遗传背景信息,试验采用线粒体DNA D-loop区序列为遗传标记,对采自核心产区的55只玉龙雪山乌鸡样品进行群体变异检测,并将所得数据与已发表的云南12个地方鸡种数据进行联合分析。结果显示:在所有个体中共检测到25个多态位点,包含单一信息位点2个,简约信息位点23个,核苷酸替换主要为转换,转换与颠换比为6.40。在该群体中共定义了14种单倍型,其单倍型数多样度为0.867±0.027,核苷酸多样度为0.01074±0.00114,群体内平均遗传距离为0.011±0.003。玉龙雪山乌鸡与云南其他地方鸡群体间的平均遗传距离在0.013(宁蒗高原鸡)~0.019(大围山微型鸡)之间,遗传分化系数Fst值在0.078(宁蒗高原鸡)~0.543(兰坪绒毛鸡)之间。在世系组成上,玉龙雪山乌鸡中含有B、E、F和G世系,占比分别为20.00%、3.64%、9.09%和67.27%,总体上玉龙雪山乌鸡群体中云南及周边地区的地方鸡血源在76.36%以上。结果揭示,玉龙雪山乌鸡的遗传多样性相对丰富,与云南其他地方鸡种间存在不同程度的遗传分化,其母系世系组成与云南其他地方鸡有较大差异。 展开更多
关键词 玉龙雪山乌鸡 mtDNA d-loop 母系世系 遗传多样性 基因渗入
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