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Comparative mitochondrial genome analysis of Cynoglossidae(Teleost:Pleuronectiformes)and phylogenetic implications
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作者 Bilin Hu Tingqi Jiang +7 位作者 Liming Wei Nannan Zhang Kaixin Wang Liqin Liu Bingjian Liu Jing Liu Zhenming Lü Li Gong 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2023年第11期69-80,共12页
Generally,a teleostean group(e.g.,family or genus)owns one type or a set of similar mitochondrial gene arrangement.It is interesting,however,that four different types of gene arrangement have been found in the mitocho... Generally,a teleostean group(e.g.,family or genus)owns one type or a set of similar mitochondrial gene arrangement.It is interesting,however,that four different types of gene arrangement have been found in the mitochondrial genome(mitogenome)of Cynoglossidae species.So far,the possible mechanisms of mitogenomic gene rearrangement and its potential implications have aroused widespread attention and caused lots of controversy.Here,a total of 21 Cynoglossidae mitogenomes and a newly sequenced mitogenome of Cynoglossus puncticpes(Pleuronectiformes:Cynoglossidae)were compared.The length ranges from 16417 bp to 18369 bp,which is mainly caused by the length heteroplasmy of control region(CR).Further analysis reveals that the difference of tandem repeats acts as a determining factor resulting in the length heterogeneity.Like most gene rearrangements of Cynoglossinae mitogenomes,tRNA-Gln gene encoded by the L-strand has translocated to the H-strand(Q inversion),accompanied by the translocation of CR in C.puncticpes mitogenome.The typical IQM order(tRNA-Ile-Gln-Met)changed to QIM order.Tandem duplication/random loss and mitochondrial recombination were accepted as the most possible models to account for the rearrangements in C.puncticpes mitogenome.Phylogenetic trees showed a strong correlation between the gap spacer in the rearranged QIM area and phylogeny,which provides a fresh idea for phylogenetic studies in future. 展开更多
关键词 MITOGENOME gene rearrangement tandem duplication/random loss mitochondrial inversion control region phylogenetic study
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The Genetic Structure and Diversity of Repomucenus curvicornis Inhabiting Liaoning Coast Based on Mitochondrial COⅠ Gene and Control Region
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作者 Li Yulong Liu Xiuze +3 位作者 Yu Xuguang Li Yiping Fu Jie Dong Jing 《Animal Husbandry and Feed Science》 CAS 2018年第1期12-17,共6页
[Object] This study was conducted to explore the genetic diversity and structure of the wild Repomucenus curvicornis inhabiting Liaoning Coast, China. [Method] The mitochondrial COⅠ gene and control region(CR) were... [Object] This study was conducted to explore the genetic diversity and structure of the wild Repomucenus curvicornis inhabiting Liaoning Coast, China. [Method] The mitochondrial COⅠ gene and control region(CR) were PCR amplified from the wild R. curvicornis populations from the Liaodong Bay(n=22) and the northern Yellow Sea(n=18), sequenced and analyzed for genetic diversity. [Result] The contents of A, T, C and G of 624 bp COⅠ gene were 24.09%, 31.04%, 25.28%, and 19.59%, and those of 460 bp CR fragment were 32.96%, 32.80%, 14.86% and 19.38%, respectively. The total number of variable sites, average number of nucleotide differences( k), haplotype diversity(H) and nucleotide diversity(π) based on COⅠ gene were 38, 4.67,(0.96±0.02) and(0.007 5±0.004 2), and those based on CR fragment were 26, 3.35,(0.97 ±0.02) and(0.007 3±0.004 3), respectively. Based on mitochondrial COⅠ gene and CR, the genetic diversity of Liaodong Bay population was lower than that of the northern Yellow Sea population. The AMOVA analysis based on CR fragments revealed almost significant genetic divergence between the Liaodong Bay and the northern Yellow Sea populations, while there was no significant genetic divergence based on COⅠ gene. The results showed that CR and COⅠ gene are effective molecular markers for detecting the genetic diversity of R. curvicornis population, while CR is more reliable than COⅠ gene in detecting the genetic structure. [Conclusion] CR is an appropriate marker for genetic analysis of marine fish population. 展开更多
关键词 Repomucenus curvicornis mitochondrial DNA coⅰ gene Control region sequence genetic diversity genetic differentiation
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基于线粒体COⅠ基因序列的梭鲈野生群体遗传结构
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作者 鲁翠云 孙志鹏 +4 位作者 曹顶臣 耿龙武 那荣滨 吴学工 郑先虎 《水产学报》 CSCD 北大核心 2024年第1期82-92,共11页
为了解梭鲈种群的遗传结构,实验利用线粒体细胞色素c氧化酶Ⅰ亚基(COⅠ)基因部分序列分析了中国6个和中亚2个群体的遗传差异,并与欧洲群体的单倍型序列进行了比较。结果在640 bp的COⅠ基因序列中检测到5个变异位点,定义了7种单倍型,发现... 为了解梭鲈种群的遗传结构,实验利用线粒体细胞色素c氧化酶Ⅰ亚基(COⅠ)基因部分序列分析了中国6个和中亚2个群体的遗传差异,并与欧洲群体的单倍型序列进行了比较。结果在640 bp的COⅠ基因序列中检测到5个变异位点,定义了7种单倍型,发现Hap1为8个梭鲈群体的共享单倍型,且与欧洲群体的HapA相同,在中国群体所占比例(93.36%)高于中亚群体(72.58%)和欧洲群体(53.85%);Hap2和Hap3是中国群体的特异单倍型,而Hap4~Hap7为中亚群体的特异单倍型。单倍型序列的聚类图和网络图均显示Hap1/A为梭鲈群体的原始单倍型,中国和中亚群体的特异单倍型相对于原始单倍型仅有1~2个位点的变异,属于Hap1/A的亚型,与欧洲群体的特异单倍型具有较大的差异。每个群体检测到1~4种单倍型,斋桑湖(ZS)群体单倍型最多,而中国的腾格里湖(NX)、兴凯湖(XK)和鸭绿江(YJ)群体仅有1个单倍型(Hap1);塔什干(TS)群体的单倍型多样性(Hd)和核苷酸多样性(π)最高(Hd=0.514±0.069;π=0.00079±0.00011),其次是ZS群体,而中国梭鲈群体的多样性参数较低。AMOVA分析结果显示,梭鲈群体间遗传变异占20.74%,群体间遗传分化程度较高(0.15≤F_(st)=0.20736<0.25),TS群体与ZS群体和中国群体间的遗传分化极大(F_(st)>0.25),中国群体中仅黑河(HH)群体与其他群体的遗传分化较大,而中国其他5个群体间无遗传分化。基于群体间遗传距离的系统进化树显示,来自中国的6个梭鲈群体与哈萨克斯坦的ZS群体聚为一支,而乌兹别克斯坦的TS群体独立为一支。研究结果为梭鲈群体的繁殖及放流管理提供了参考。 展开更多
关键词 梭鲈 线粒体coⅰ基因 野生群体 遗传结构
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Genetic Variation Among the Geographic Population of the Grain Aphid, Sitobion avenae (Hemiptera: Aphididae) in China Inferred from Mitochondrial COI Gene Sequence 被引量:7
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作者 XU Zhao-huan CHEN Ju-lian +2 位作者 CHENG Deng-fa LIU Yong Frédéric Francis 《Agricultural Sciences in China》 CAS CSCD 2011年第7期1041-1048,共8页
In order to characterize the genetic relationship of the geographic populations of Sitobion avenae (Hemiptera: Aphididae) in China, a 588 bp region of the mitochondrial cytochrome oxidase subunit I (mtDNA-COI) ge... In order to characterize the genetic relationship of the geographic populations of Sitobion avenae (Hemiptera: Aphididae) in China, a 588 bp region of the mitochondrial cytochrome oxidase subunit I (mtDNA-COI) gene was sequenced and analyzed among the different geographic populations. 269 individuals were collected from 17 localities in different wheat-growing areas in China that covered most of the range reported for this species. Within the sequence among these geographic populations, 15 polymorphic sites defined 16 distinct haplotypes, ranging in sequence divergence from 0.2% (one nucleotide) to 1.7% (10 nucleotides). Of the 15 variable sites, 12 were transitional substitutions, 2 were transversional substitutions and 1 was transitional and transversional substitution. Phylogenetic analysis showed that all haplotypes were highly interconnected with each other, in absence of phylogeographic structing. Each of 8 haplotypes was found only at one locality, and the other haplotypes were the widespread distributed in the different localities. The higher genetic diversity was found in the northern China populations than that in the southern China populations. The low genetic differentiation (FST=-0.06945-0.69857) and high migration rate (Nm=0.21575-infinite) of Chinese populations suggest that dispersal over long distance is a major factor in the demography of S. avenae. 展开更多
关键词 Sitobion avenae insect pest mitochondrial DNA mtDNA-COI gene geographic variation
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Assembly and phylogenomic analysis of cotton mitochondrial genomes provide insights into the history of cotton evolution
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作者 Yanlei Feng Yukang Wang +10 位作者 Hejun Lu Jun Li Delara Akhter Fang Liu Ting Zhao Xingxing Shen Xiaobo Li James Whelan Tianzhen Zhang Jianping Hu Ronghui Pan 《The Crop Journal》 SCIE CSCD 2023年第6期1782-1792,共11页
Cotton is a major crop that provides the most important renewable textile fibers in the world.Studies of the taxonomy and evolution of cotton species have received wide attentions,not only due to cotton’s economic va... Cotton is a major crop that provides the most important renewable textile fibers in the world.Studies of the taxonomy and evolution of cotton species have received wide attentions,not only due to cotton’s economic value but also due to the fact that Gossypium is an ideal model system to study the origin,evolution,and cultivation of polyploid species.Previous studies suggested the involvement of mitochondrial genome editing sites and copy number as well as mitochondrial functions in cotton fiber elongation.Whereas,with only a few mitogenomes assembled in the cotton genus Gossypium,our knowledge about their roles in cotton evolution and speciation is still scarce.To close this gap,here we assembled 20 mitogenomes from 15 cotton species spanning all the cotton clades(A–G,K,and AD genomes)and 5 cotton relatives using short and long sequencing reads.Systematic analyses uncovered a high level of mitochondrial gene sequence conservation,abundant sequence repeats and many insertions of foreign sequences,as well as extensive structural variations in cotton mitogenomes.The sequence repeats and foreign sequences caused significant mitogenome size inflation in Gossypium and its close relative Kokia in general,while there is no significant difference between the lint and fuzz cotton mitogenomes in terms of gene content,RNA editing,and gene expression level.Interestingly,we further revealed the specific presence and expression of two novel mitochondrial open reading frames(ORFs)in lint-fiber cotton species.Finally,these structural features and novel ORFs help us gain valuable insights into the history of cotton evolution and polyploidization and the origin of species producing long lint fibers from a mitogenomic perspective. 展开更多
关键词 Cotton evolution Cotton phylogeny Lint fiber cotton mitochondrial genome mitochondrial genes
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The cotton mitochondrial chimeric gene orf610a causes male sterility by disturbing the dynamic balance of ATP synthesis and ROS burst 被引量:3
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作者 Yongjie Zhang Yang Han +12 位作者 Meng Zhang Xuexian Zhang Liping Guo Tingxiang Qi Yongqi Li Juanjuan Feng Hailin Wang Huini Tang Xiuqin Qiao Liangliang Chen Xiatong Song Chaozhu Xing Jianyong Wu 《The Crop Journal》 SCIE CSCD 2022年第6期1683-1694,共12页
Plant cytoplasmic male sterility(CMS)is maternally inherited and often manifested as aborted pollen development,but the molecular basis of abortion remains to be identified.To facilitate an investigation of CMS in cot... Plant cytoplasmic male sterility(CMS)is maternally inherited and often manifested as aborted pollen development,but the molecular basis of abortion remains to be identified.To facilitate an investigation of CMS in cotton,the complete sequence of cotton mitochondrial(mt)genome for CMS-D2 line ZBA was determined.The mt genome was assembled as a single circular molecule with 634,036 bp in length.A total of 194 ORFs,36 protein-coding genes,six r RNAs,and 24 t RNAs were identified.Several chimeric genes encoding hypothetical proteins with transmembrane domains were identified.Among them,a previously unknown chimeric gene,orf610a,which is composed of atp1 and a 485-bp downstream sequence of unknown nature,was identified.RT-PCR and q RT-PCR validation indicated that orf610a was expressed specifically in a sterile line.Ectopic expression of orf610a in yeast resulted in excessive accumulation of reactive oxygen species and reduction in ATP content,in addition to inhibition of cellular growth.Transgenic A.thaliana overexpressing orf610a fused with a mitochondrial targeting peptide displayed partial male sterility.Interaction between ORF610a and the nuclear-encoded protein RD22 indicated an association between ORF610a and pollen abortion.Positive feedback during transcriptional regulation between nuclear regulatory factors and the mt CMS gene may account for the male sterility of ZBA. 展开更多
关键词 Cytoplasmic male sterility mitochondrial genome Chimeric gene Reactive oxygen species ATP
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Single and Mitochondrial Gene Inheritance Disorder Prediction Using Machine Learning 被引量:2
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作者 Muhammad Umar Nasir Muhammad Adnan Khan +3 位作者 Muhammad Zubair Taher MGhazal Raed A.Said Hussam Al Hamadi 《Computers, Materials & Continua》 SCIE EI 2022年第10期953-963,共11页
One of the most difficult jobs in the post-genomic age is identifying a genetic disease from a massive amount of genetic data.Furthermore,the complicated genetic disease has a very diverse genotype,making it challengi... One of the most difficult jobs in the post-genomic age is identifying a genetic disease from a massive amount of genetic data.Furthermore,the complicated genetic disease has a very diverse genotype,making it challenging to find genetic markers.This is a challenging process since it must be completed effectively and efficiently.This research article focuses largely on which patients are more likely to have a genetic disorder based on numerous medical parameters.Using the patient’s medical history,we used a genetic disease prediction algorithm that predicts if the patient is likely to be diagnosed with a genetic disorder.To predict and categorize the patient with a genetic disease,we utilize several deep and machine learning techniques such as Artificial neural network(ANN),K-nearest neighbors(KNN),and Support vector machine(SVM).To enhance the accuracy of predicting the genetic disease in any patient,a highly efficient approach was utilized to control how the model can be used.To predict genetic disease,deep and machine learning approaches are performed.The most productive tool model provides more precise efficiency.The simulation results demonstrate that by using the proposed model with the ANN,we achieve the highest model performance of 85.7%,84.9%,84.3%accuracy of training,testing and validation respectively.This approach will undoubtedly transform genetic disorder prediction and give a real competitive strategy to save patients’lives. 展开更多
关键词 genetic disorder machine learning deep learning single gene inheritance gene disorder mitochondrial gene inheritance disorder
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Mitochondrial protection by low doses of insulin-like growth factor-Ⅰin experimental cirrhosis 被引量:11
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作者 Raquel Pérez María García-Fernández +5 位作者 Matías Díaz-Sánchez Juan E Puche Gloria Delgado Marian Conchillo Jordi Muntané Inma Castilla-Cortázar 《World Journal of Gastroenterology》 SCIE CAS CSCD 2008年第17期2731-2739,共9页
AIM: To characterize the mitochondrial dysfunction in experimental cirrhosis and to study whether insulin-like growth factor-Ⅰ(IGF-Ⅰ) therapy (4 wk) is able to induce beneficial effects on damaged mitochondria leadi... AIM: To characterize the mitochondrial dysfunction in experimental cirrhosis and to study whether insulin-like growth factor-Ⅰ(IGF-Ⅰ) therapy (4 wk) is able to induce beneficial effects on damaged mitochondria leading to cellular protection. METHODS: Wistar rats were divided into three groups: Control group, untreated cirrhotic rats and cirrhotic rats treated with IGF-Ⅰtreatment (2 μg/100 g bw/d). Mitochondrial function was analyzed by flow cytometry in isolated hepatic mitochondria, caspase 3 activation was assessed by Western blot and apoptosis by TUNEL in the three experimental groups. RESULTS: Untreated cirrhotic rats showed a mitochon- drial dysfunction characterized by a significant reduction of mitochondrial membrane potential (in status 4 and 3); an increase of intramitochondrial reactive oxigen species (ROS) generation and a significant reduction of ATPase activity. IGF-Ⅰtherapy normalized mitochondrial func-tion by increasing the membrane potential and ATPase activity and reducing the intramitochondrial free radical production. Activity of the electron transport complexes Ⅰand Ⅲ was increased in both cirrhotic groups. In addition, untreated cirrhotic rats showed an increase of caspase 3 activation and apoptosis. IGF-Ⅰtherapy reduced the expression of the active peptide of caspase 3 and resulted in reduced apoptosis. 展开更多
关键词 胰岛素增长因素 细胞凋亡 症状 实验研究
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Three New Ranidae Mitogenomes and the Evolution of Mitochondrial Gene Rearrangements among Ranidae Species 被引量:1
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作者 Jiandong YANG Jiaojiao YU +3 位作者 Jiabin LIU Ming ZHOU Biao LI Bo OUYANG 《Asian Herpetological Research》 SCIE CSCD 2018年第2期85-98,共14页
Various types of gene rearrangements have been discovered in the mitogenoes of the frog family Ranidae. In this study, we determined the complete mitogenome sequence of three Rana frogs. By combining the available mit... Various types of gene rearrangements have been discovered in the mitogenoes of the frog family Ranidae. In this study, we determined the complete mitogenome sequence of three Rana frogs. By combining the available mitogenomic data sets from GenBank, we evaluated the phylogenetic relationships of Ranidae at the mitogenome level and analyzed mitogenome rearrangement cases within Ranidae. The three frogs shared an identical mitogenome organization that was extremely similar to the typical Neobatrachian-type arrangement. Except for the genus Babina, the monophyly of each genus was well supported. The genus Amnirana occupied the most basal position among the Ranidae. The [Lithobates + Rana] was the closest sister group of Odorrana. The diversity of mitochondrial gene arrangements in ranid species was unexpectedly high, with 47 mitogenomes from 40 ranids being classified into 10 different gene rearrangement types. Some taxa owned their unique gene rearrangement characteristics, which had significant implication for their phylogeny analysis. All rearrangement events discovered in the Ranidae mitogenomes can be explained by the duplication and random loss model. 展开更多
关键词 mitochondrial genomes gene rearrangement molecular phylogeny RANIDAE
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Mitochondrial DNA Markers for PCR-Based Phylogenetic Analysis of Ark Shells 被引量:1
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作者 Tomomi Tanaka Futoshi Aranishi 《Open Journal of Marine Science》 2013年第4期182-189,共8页
Arcidae species are commercially important bivalves in Japan and are commonly referred to as bloody ark due to their red blood. They have thick shells with distinct radiating ribs, and the numbers of these ribs are im... Arcidae species are commercially important bivalves in Japan and are commonly referred to as bloody ark due to their red blood. They have thick shells with distinct radiating ribs, and the numbers of these ribs are important morphological features for species discrimination. However, some Arcidae species are morphologically indistinguishable, with a similar number of the ribs in adults and deficient rib formation, particularly among juveniles. Thus, we developed a reliable molecular marker to genetically discriminate between 7 Arcidae species belonging to Scapharca, Anadara, and Tegillarca based on species-specific polymorphic segments of mitochondrial DNA. PCR amplification of partial COI, 16S rRNA, 12S rRNA, and Cyt b genes was performed on 7 species using 8 primer sets. Only the set of Scapharca-specific forward primer and universal reverse primer for the partial COI gene successfully yielded single PCR products from all 7 species examined. Thus, nucleotide sequences of 481 bp portion of these PCR products were determined, and the degrees of nucleotide substitutions ranged from 0.4% between S. broughtonii and T. granosa to 20.2% between S. satowi and A. antiquata. In addition, a phylogenetic tree showed significant differences between 7 species, with higher bootstrap support than 69. 展开更多
关键词 Ark SHELL Arcidae mitochondrial DNA COI gene PHYLOgeneTIC Analysis
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Nuclear pseudogenes of mitochondrial DNA as a variable part of the human genome 被引量:3
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作者 YUAN JIN DUO JIN XIU SHI +2 位作者 GUANG XUNMENG LI GUO AN GENG XI HU( Shanghai Institute of Cell Biology and the ShanghaiLife Science Center, Chinese Academy of Sciences,320 Yue Yang Road, Shanghai 200031, China)( Department of Biology, Shandong Normal Univers 《Cell Research》 SCIE CAS CSCD 1999年第4期281-290,共10页
INTRODUCTIONNuclearpseudogenesofmitochondrial(mt)DNAwereinitiallydiscoveredintheearly80's[1--6].However,mechanismsforthegenerationofmtDNApseudogenesarestillnotclearandmayvaryindifferentcases.BothRNA--[7--8]andDNAm... INTRODUCTIONNuclearpseudogenesofmitochondrial(mt)DNAwereinitiallydiscoveredintheearly80's[1--6].However,mechanismsforthegenerationofmtDNApseudogenesarestillnotclearandmayvaryindifferentcases.BothRNA--[7--8]andDNAmediated[9--11]processeshavebeensugges... 展开更多
关键词 人类基因组 核基因 拟基因 线粒体DNA 基因组不稳定性
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Frequency of mitochondrial 12S rRNA gene A1555G and 961 insC mutations among children with sensorineural deafness in China 被引量:1
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作者 Xia Xu Guangqian Xing +4 位作者 Qinjun Wei Zhibin Chen Hongbo Cheng Xin Cao Xingkuan Bu 《Journal of Nanjing Medical University》 2006年第5期283-286,共4页
Objective: To investigate the frequency of mitochondrial 12S rRNA gene A1555G and 961 insC mutations among Chinese with sensorineural deafness. Methods: Blood samples from 78 sporadic cases with sensorineural deafne... Objective: To investigate the frequency of mitochondrial 12S rRNA gene A1555G and 961 insC mutations among Chinese with sensorineural deafness. Methods: Blood samples from 78 sporadic cases with sensorineural deafness were obtained and DNA was extracted from the leukocytes, then the mitochondrial DNA target fragments were amplified by polymerase chain reaction(PCR). The 1555G mutations were detected by BsmA 1 restriction endonuclease digestion, every fragment was analyzed by sequencing; All the 961 insC mutation were detected by direct sequencing. Results: The percent age of A1555G mutation and mt961C insertion were 6.4% and 2.6% in the hearing-impaired Chinese subjects respectively. Conclusion: A1555G and 961insC mutations in mitochondrial DNA 12S rRNA gene regions may play a role in the pathogenesis of hearing loss in the sporadic cases. 展开更多
关键词 mitochondrial DNA 12S rRNA gene mutation hearing loss
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Mitochondrial genome of Chthamalus challengeri(Crustacea:Sessilia): gene order comparison within Chthamalidae and phylogenetic consideration within Balanomorpha
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作者 Panpan Chen Jun Song +4 位作者 Xin Shen Yuefeng Cai Ka Hou Chu Yongqi Li Mei Tian 《Acta Oceanologica Sinica》 SCIE CAS CSCD 2019年第6期25-31,共7页
Acorn barnacles are important model species in researches on intertidal ecology, larval development and biofouling. At present, with the development of mitochondrial genomics, it is helpful to understand the phylogene... Acorn barnacles are important model species in researches on intertidal ecology, larval development and biofouling. At present, with the development of mitochondrial genomics, it is helpful to understand the phylogenetic relationship from the mitogenomic level. The complete mitochondrial genome of Chthamalus challengeri was presented. The genome is a circular molecule of 15 358 bp. Compared with other species in Balanomorpha, the non-coding region is longer, while the length of the genes is similar to the other species. The overall A+T content of the mitochondrial genome of C. challengeri is 70.5%. There are variations of initiation and stop codons in the known Balanomorpha mitochondrial genomes. The C. challengeri and C. antennatus within the same genus share the identical gene arrangement. However, the gene arrangement of different genera in Chthamalidae is different, as there is a translocation between two tRNA genes and an inversion involving a large gene block. In particular, both srRNA and lrRNA of the two species in Chthamalus are encoded in the heavy strand, differing from the former Balanomorpha species. The topology and gene arrangement in Chthamalidae support each other. Phylogenetic analysis indicates that the Chthamalidae is monophyletic, while the Balanidae and Archaeobalanidae are polyphyletic. 展开更多
关键词 Balanomorpha CHTHAMALUS challengeri mitochondrial genome gene REARRANGEMENT PHYLOGENY
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Depletion of PINK1 sensitizes breast cancer cells to polyphyllin Ⅰ via mitophagy suppression and DRP1-mediated mitochondrial fission
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作者 LI Guo-bing FU Ruo-qiu +10 位作者 SHEN Han-ming ZHOU Jing HU Xiao-ye LIU Yan-xia LI Yu-nong ZHANG Hong-wei LIU Xin ZHANG Yan-hao HUANG Cheng ZHANG Rong GAO Ning 《中国药理学与毒理学杂志》 CAS CSCD 北大核心 2016年第10期1074-1074,共1页
OBJECTIVE To elucidate the molecular mechanism and the anti-breast cancer effect of polyphyllinⅠ,which is a natural compound extracted from Rhizoma of Paris polyphyllin.METHODS Human breast cancer cells were treated ... OBJECTIVE To elucidate the molecular mechanism and the anti-breast cancer effect of polyphyllinⅠ,which is a natural compound extracted from Rhizoma of Paris polyphyllin.METHODS Human breast cancer cells were treated with polyphyllinⅠ,after which DRP1-dependent mitochondrial fission and apoptosis,mitophagy and PINK1/PARK2 pathway were evaluated.A genetic approach was employed to determine how knockdown of PINK1 with sh RNA regulates polyphyllinⅠ-induced mitophagy and apoptosis.The inhibitory effect of polyphyllinⅠon tumor growth in a breast cancer cell xenograft mouse model was also examined.RESULTS PolyphyllinⅠenhanced the stabilization of full-length PINK1at the mitochondrial surface,leading to PARK2 recruitment to mitochondria,and culminating in mitophagy.PolyphyllinⅠalso induced dephosphorylation of DRP1 at Ser637 and mitochondrial translocation of DRP1,leading to mitochondrial fission and apoptosis.Knockdown of PINK1 evidently suppressed mitophagy stimulated by polyphyllinⅠ,and markedly enhanced DRP1-dependent mitochondrial fission and apoptosis induced by polyphyl inⅠ.Furthermore,suppression of DRP1 by mdivi-1 or sh RNA inhibits PINK1 knockdown-mediated mitochondrial fragmentation and apoptosis in response to polyphyllinⅠtreatment,suggesting that depletion of PINK1 lead to mitochondrial fragmentation due to excessive fission.Our in vivo study also showed that knockdown of PINK1potentiated polyphyllinⅠ-mediated inhibition of tumor growth in a breast cancer cell xenograft mouse model.CONCLUSION Our study provides a mechanism to support the role of PINK1 in the regulation of polyphyl inⅠ-induced mitophagy and apoptosis,and suggest polyphylinⅠas a potential drug for treatment of breast cancer. 展开更多
关键词 polyphyllin PINK1 MITOPHAGY DRP1 mitochondrial fission APOPTOSIS
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Genomic Analysis of Mitochondrial Carrier Genes in the Bombyx mori
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作者 CAO Jun SHI Feng 《Journal of Integrative Agriculture》 SCIE CAS CSCD 2012年第10期1707-1713,共7页
This study is performed to investigate the mitochondrial carrier gene family in silkworm genome. In total, 30 genes are identified and claded into eight well-conserved groups. Gene duplication contributes to the expan... This study is performed to investigate the mitochondrial carrier gene family in silkworm genome. In total, 30 genes are identified and claded into eight well-conserved groups. Gene duplication contributes to the expansion and complexity of this family. Diverse expression patterns suggest their functional differentiation. Analyses of the sitespecific profiles reveal critical amino acid residues for functional divergence. This study highlights the molecular evolution of the mitochondrial carrier gene family in silkworm and may provide a starting point for further experimental verification. 展开更多
关键词 mitochondrial carrier gene phylogenetic analysis EVOLUTION SILKWORM
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Differential RNA Editing of Mitochondrial Genes in WA-Cytoplasmic Based Male Sterile Line Pusa 6A, and Its Maintainer and Restorer Lines
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作者 Umakanta NGANGKHAM Swarup Kumar PARIDA +1 位作者 Ashok Kumar SINGH Trilochan MOHAPATRA 《Rice science》 SCIE CSCD 2019年第5期282-289,共8页
RNA editing changes the nucleotides at the transcript level of mitochondrial genes which results in synthesis of functional proteins.This study was designed to find the editing sites which could be implicated in male ... RNA editing changes the nucleotides at the transcript level of mitochondrial genes which results in synthesis of functional proteins.This study was designed to find the editing sites which could be implicated in male fertility restoration and to develop editing based markers for differentiation of cytoplasmic male sterility and maintainer lines from each other.DNA and RNA from young panicles were isolated from three-line system of hybrid rice PRH10,wild abortive(WA)cytoplasm based male sterile(A line Pusa 6A),maintainer(B line Pusa 6B)and restorer(R line PRR78)lines.Pusa 6A and PRR78 having the same WA cytoplasm are allo-nuclear and iso-cytpolasmic lines.The genomic and cDNA amplicons for eight mitochondrial genes(18SrRNA,atp6,atp9,cobII,coxI,coxIII,nadI and rps3)were sequenced and compared.Differences in genomic and cDNA sequences were considered as editing.Two hundred and thirty editing sites having base substitution or insertion/deletion were identified with the highest in 18SrRNA(5.74%)and the lowest in coxI(0.60%).The highest editing sites were observed in fertile maintainer Pusa 6B followed by PRR78 and Pusa 6A,of which random five editing sites in five different rice mitochondrial transcripts namely atp9,cobII,coxIII,rps3 and 18SrRNA were chosen and validated through cleaved amplified polymorphism sequence(CAPS)analysis and found to be partially edited in four genes.The identical editing sites of different mitochondrial genes from maintainer and restorer lines might reflect their possible contribution to fertility restoration of sterile WA cytoplasm. 展开更多
关键词 cleaved amplified polymorphism sequence CYTOPLASMIC male STERILITY hybrid rice RNAediting mitochondrial gene WILD abortive NUCLEOTIDE
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Complete mitochondrial genomes of two deep-sea pandalid shrimps,Heterocarpus ensifer and Bitias brevis:insights into the phylogenetic position of Pandalidae(Decapoda:Caridea)
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作者 SUN Shao’e CHENG Jiao +1 位作者 SUN Song SHA Zhongli 《Journal of Oceanology and Limnology》 SCIE CAS CSCD 2020年第3期816-825,共10页
The mitochondrial genome(mitogenome)analysis is a significant tool for investigating the evolutionary history of metazoan animals.The family Pandalidae is a diverse caridean group containing mainly deep-sea species.Un... The mitochondrial genome(mitogenome)analysis is a significant tool for investigating the evolutionary history of metazoan animals.The family Pandalidae is a diverse caridean group containing mainly deep-sea species.Until May 302019,only two complete mitogenomes are available in GenBank.Here we present the complete mitogenome sequences of two deep-sea pandalid shrimps,Heterocarpus ensifer and Bitias brevis through Illumina sequencing.The mitochondrial genomes were determined to be 15939 bp and 15891 bp long,and both consist of 13 protein-coding genes(PCGs),23 transfer-RNA genes(tRNAs),two ribosomal-RNA genes(rRNAs),and one control region.The nucleotide composition is biased toward adenine and thymine.Overall,the gene contents and arrangements are consistent with the pancrustacean ground pattern.The alignment of the control regions of four pandalids reveals a conserved sequence block(CSB)(104 bp in length,average GC%=29.47%and 69.23%similarity).A phylogenetic analysis based on 51 Caridea complete mitogenomes revealed that the deep-sea pandalid shrimps are situated an intermediate lineage,with a tendency to originated from those living in shallow sea area. 展开更多
关键词 Pandalidae deep sea mitochondrial genome gene order PHYLOgeneTIC relationships
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Genetic Differences of Mitten Crabs Based on RFLP Analysis on Mitochondrial Cytochrome Oxidase Subunit I(COI) Gene
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作者 HU Pengfei WANG Qian +1 位作者 DAI Wei WANG Xiaomei 《Journal of Northeast Agricultural University(English Edition)》 CAS 2008年第1期51-57,共7页
The genetic differences of 15 mitten crab populations from 6 river systems in China's Mainland and 1 population from Russia were studied based on RFLP analysis of mitochondrial cytochrome oxidase subunit I (CO I... The genetic differences of 15 mitten crab populations from 6 river systems in China's Mainland and 1 population from Russia were studied based on RFLP analysis of mitochondrial cytochrome oxidase subunit I (CO I). The results showed that Tas I-RFLP pattern could be used as a genetic marker to distinguish Eriocheir hepuensis from Eriocheir sinensis, Eriocheirjaponica and Eriocheir leptognathus; genetic distances among 13 populations of Eriocheir sinensis range from 0 to 0.015, indicating that they were different geographic strains; the subspecies status of Eriocheir sinensis and Eriocheir hepuensis (population from Nanliujiang) were considered owning to their genetic distances of 0.02-0.044, indicating that genetic divergence between them was low; Eriocheir leptognathus (population from Nanpaihe, Tianjin) was the most distant taxon with genetic distances value of 0.147-0.195, which could be defined as genetic distances between species in genus Eriocheir. 展开更多
关键词 mitten crab genetic differences mitochondrial CO I gene RFLP
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A phylogeny of the Passerida(Aves: Passeriformes)based on mitochondrial 12S ribosomal RNA gene
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作者 Lina Wu Yanfeng Sun +3 位作者 Juyong Li Yaqing Li Yuefeng Wu Dongming Li 《Chinese Birds》 CSCD 2015年第1期22-29,共8页
Background: Passerida is the largest avian radiation within the order Passeriformes. Current understanding of the high-level relationships within Passerida is based on DNA–DNA hybridizations; however, the phylogeneti... Background: Passerida is the largest avian radiation within the order Passeriformes. Current understanding of the high-level relationships within Passerida is based on DNA–DNA hybridizations; however, the phylogenetic relationships within this assemblage have been the subject of many debates.Methods: We analyzed the 12 S ribosomal RNA gene from 49 species of Passerida, representing 14 currently recognized families, to outline the phylogenetic relationships within this group.Results: Our results identified the monophyly of the three superfamilies in Passerida: Sylvioidea, Muscicapoidea and Passeroidea. However, current delimitation of some species is at variance with our phylogeny estimate. First, the Parus major, which had been placed as a distinct clade sister to Sylvioidea was identified as a member of the super family;second, the genus Regulus was united with the Sturnidae and nested in the Muscicapoidea clade instead of being a clade of Passerida.Conclusion: Our results were consistent with Johansson's study of the three superfamilies except for the al ocation of two families, Paridae and Regulidae. 展开更多
关键词 PHYLOGENY Passerida mitochondrial 12S RIBOSOMAL RNA gene
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基于mtDNA COⅠ基因对榕属植物上粉蚧的分子鉴定和系统发育分析
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作者 傅卫民 刘志红 +2 位作者 蔡波 李惠萍 吴福中 《生物安全学报(中英文)》 CSCD 北大核心 2024年第1期12-18,共7页
【目的】榕属植物是我国华南地区普遍种植的园林植物,本研究旨在明确榕属植物上发生危害的粉蚧种类。【方法】测定榕属植物上发生为害的9种粉蚧的COⅠ基因序列,利用生物信息学软件分析其序列同源性、遗传结构及系统进化关系。【结果】测... 【目的】榕属植物是我国华南地区普遍种植的园林植物,本研究旨在明确榕属植物上发生危害的粉蚧种类。【方法】测定榕属植物上发生为害的9种粉蚧的COⅠ基因序列,利用生物信息学软件分析其序列同源性、遗传结构及系统进化关系。【结果】测出38条粉蚧的COⅠ基因序列相似度达到99.25%~100.00%,9种粉蚧的种间遗传距离为0.070~0.173,其中堆蜡粉蚧与菠萝灰粉蚧遗传距离最大,而康氏粉蚧与橘小粉蚧遗传距离最小,说明康氏粉蚧与橘小粉蚧亲缘关系较近。构建的系统发育树中,每种粉蚧与GenB ank数据库下载的已知序列聚在一支,系统发育树结果与形态学鉴定结果一致。【结论】线粒体COⅠ基因序列能够快速准确鉴定榕属植物上的粉蚧,也揭示了榕属植物上粉蚧的遗传结构和系统进化关系,为农林业监测和精准防治粉蚧类害虫提供科学依据。 展开更多
关键词 榕属植物 粉蚧 分子鉴定 线粒体coⅰ基因 系统发育
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