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碱基与氮甲基乙酰胺相互作用的从头算和ABEEM_(σπ)研究 被引量:8
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作者 霍红洁 赵东霞 杨忠志 《高等学校化学学报》 SCIE EI CAS CSCD 北大核心 2011年第12期2877-2884,共8页
选取氮甲基乙酰胺(N-Methylacetamide,NMA)和DNA碱基为研究对象,应用ABEEMσπ/MM方法研究了NMA与碱基之间形成的二聚体的几何构型、电荷分布及结合能等性质,并进行了相应的从头算(abinitio)MP2水平研究,在B3LYP/6-311++G(d,p)水平下对... 选取氮甲基乙酰胺(N-Methylacetamide,NMA)和DNA碱基为研究对象,应用ABEEMσπ/MM方法研究了NMA与碱基之间形成的二聚体的几何构型、电荷分布及结合能等性质,并进行了相应的从头算(abinitio)MP2水平研究,在B3LYP/6-311++G(d,p)水平下对结构进行了优化.将2种方法的研究结果进行比较发现,所获得的构型、电荷及结合能之间具有很好的一致性,NMA与DNA碱基相互作用的强度大小依次为:鸟嘌呤>胸腺嘧啶>胞嘧啶>腺嘌呤,且证明了ABEEMσπ/MM模型的参数具有很好的可转移性. 展开更多
关键词 氮甲基乙酰胺(NMA) 碱基 从头算(ab initio)mp2 abEEMΣΠ/MM 几何结构 结合能
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硝基甲烷光解离的量子化学研究
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作者 于建国 刘若庄 《北京师范大学学报(自然科学版)》 CAS 1988年第3期68-71,共4页
使用基于RHF和UIIF ab initio的梯度方法优化了CH_3NO_2的基态(S_0)和第一激发态(T_1),第二激发态(T_2)的平衡几何构型,及CH_3NO_2在这3个态解离为CH_3和NO_2自由基的相应的态的平衡几何构型,用MP2法考虑了相关能校正,求得CH_3NO_2的S_0... 使用基于RHF和UIIF ab initio的梯度方法优化了CH_3NO_2的基态(S_0)和第一激发态(T_1),第二激发态(T_2)的平衡几何构型,及CH_3NO_2在这3个态解离为CH_3和NO_2自由基的相应的态的平衡几何构型,用MP2法考虑了相关能校正,求得CH_3NO_2的S_0,T_1和T_2态的解离能分别为168.9,338.6和119.9kJ/mol,表明CH_3NO_2的T_2态易于解离为CH_3和NO_2,较好地验证了近来Jacox的实验事实. 展开更多
关键词 硝基甲烷 光解离 从头算 mp2
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ClONO_2及其异构体光解反应的从头算研究(Ⅱ)——ClONO_2→ClO+NO_2反应机理研究
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作者 林梦海 林连堂 《高等学校化学学报》 SCIE EI CAS CSCD 北大核心 1998年第2期284-287,共4页
用从头算方法讨论了大气臭氧层主要破坏物ClONO2在光照下分解反应途径:ClONO2→ClO+NO2的反应机理.该反应的2个过渡态ClO…NOO(TS2a)和OCl…NOO(TS2b)中TS2a能垒较高,始态难于越过... 用从头算方法讨论了大气臭氧层主要破坏物ClONO2在光照下分解反应途径:ClONO2→ClO+NO2的反应机理.该反应的2个过渡态ClO…NOO(TS2a)和OCl…NOO(TS2b)中TS2a能垒较高,始态难于越过如此高的势垒;TS2b势垒较低,而产物到过渡态TS2b的能垒也仅有1.20eV,故预测该反应为一个可逆反应. 展开更多
关键词 氯硝酸 ClONO2 光解反应 异构体 大气污染
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Theoretical Investigations on the π-π Stacking Interactions in Phenol-Water Complexes
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作者 Shruti Sharma Mrinal J Bezbaruah +2 位作者 Ibrahim Ali Mahasweta Choudhury Bipul Bezbaruah 《Computational Chemistry》 2018年第2期15-25,共11页
Non covalent interactions are quite common in all kinds of π-systems, such as π-π interactions, long range/short range van der waal force of interactions, ion-π interactions etc. Ab initio calculations are well es... Non covalent interactions are quite common in all kinds of π-systems, such as π-π interactions, long range/short range van der waal force of interactions, ion-π interactions etc. Ab initio calculations are well established and account well for the experimental long range interaction energies for small clusters of aromatic molecules and most of the calculations were carried out using the MPn methods. If a reasonably large basis set is used to calculate the stacking interaction energies for a cluster (dimer, trimer etc.) of aromatic molecules then the electron-electron correlation energy may be properly calculated. Moreover, ab initio calculations for aromatic π-systems show that the calculated stacking interaction energies highly depend on the basis set used and the electron correlation energy. In this investigation, the electron correlation of the stacked hydrated phenol systems has been accounted at MP2 level of calculations. We have calculated the π-π stacking interaction energies of the hydrated phenolic systems with different conformations. 展开更多
关键词 PHENOL π-π STACKING mp2 ab initio etc.
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Halogen Bonding: An AIM Analysis of the Weak Interactions 被引量:1
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作者 邹建卫 卢运祥 +2 位作者 俞庆森 张华星 蒋勇军 《Chinese Journal of Chemistry》 SCIE CAS CSCD 2006年第12期1709-1715,共7页
A series of complexes formed between halogen-containing molecules and ammonia have been investigated by means of the atoms in molecules (AIM) approach to gain a deeper insight into halogen bonding. The existence of ... A series of complexes formed between halogen-containing molecules and ammonia have been investigated by means of the atoms in molecules (AIM) approach to gain a deeper insight into halogen bonding. The existence of the halogen bond critical points (XBCP) and the values of the electron density (Pb) and Laplacian of electron density (V2pb) at the XBCP reveal the closed-shell interactions in these complexes. Integrated atomic properties such as charge, energy, polarization moment, volume of the halogen bond donor atoms, and the corresponding changes (△) upon complexation have been calculated. The present calculations have demonstrated that the halogen bond represents different AIM properties as compared to the well-documented hydrogen bond. Both the electron density and the Laplacian of electron density at the XBCP have been shown to correlate well with the interaction energy, which indicates that the topological parameters at the XBCP can be treated as a good measure of the halogen bond strength In addition, an excellent linear relationship between the interatomic distance d(X…N) and the logarithm of Pb has been established. 展开更多
关键词 AIM halogen bonding ab initio calculation mp2(full)/aug-cc-pvdz
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Theoretical studies on the structures and isomerization of the LiSiF_3 system
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作者 冯大诚 林启君 +1 位作者 冯圣玉 吕文彩 《Science China Chemistry》 SCIE EI CAS 1999年第4期419-424,共6页
Various possible isomers of LiSiF3 system and isomerization between them have been studied at G2(MP2) level using ab initio calculations. The relative energies of four minimum points on the potential energy surface ar... Various possible isomers of LiSiF3 system and isomerization between them have been studied at G2(MP2) level using ab initio calculations. The relative energies of four minimum points on the potential energy surface are -128.6, -194.3, -12.7 and -122.8kj/mol(taking the sum of the energies of LiF and SiF2 as zero) . The structural energy of the four-membered ring that contains three F-Si-F-Li four-membered rings with C3v symmetry is the lowest. The highest potential barrier for the isomerization of the remaining three- or four-membered structure is 12.5 kj/ mol. 展开更多
关键词 LiSiF3 SYSTEM ab initio CALCULATION G2(mp2) isomerization.
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