Canopy temperature strongly influences crop yield formation and is closely related to plant physiological traits.However, the effects of nitrogen treatment on canopy temperature and rice growth have yet to be comprehe...Canopy temperature strongly influences crop yield formation and is closely related to plant physiological traits.However, the effects of nitrogen treatment on canopy temperature and rice growth have yet to be comprehensively examined. We conducted a two-year field experiment with three rice varieties(HD-5, NJ-9108, and YJ-805) and three nitrogen treatments(zero-N control(CK), 200 kg ha~(–1)(MN), and 300 kg ha~(–1)(HN)). We measured canopy temperature using a drone equipped with a high-precision camera at the six stages of the growth period. Generally,canopy temperature was significantly higher for CK than for MN and HN during the tillering, jointing, booting, and heading stages. The temperature was not significantly different among the nitrogen treatments between the milky and waxy stages. The canopy temperature of different rice varieties was found to follow the order: HD-5>NJ-9108>YJ-805, but the difference was not significant. The canopy temperature of rice was mainly related to plant traits, such as shoot fresh weight(correlation coefficient r=–0.895), plant water content(–0.912), net photosynthesis(–0.84), stomatal conductance(–0.91), transpiration rate(–0.90), and leaf stomatal area(–0.83). A structural equation model(SEM) showed that nitrogen fertilizer was an important factor affecting the rice canopy temperature.Our study revealed:(1) A suite of plant traits was associated with the nitrogen effects on canopy temperature,(2) the heading stage was the best time to observe rice canopy temperature, and(3) at that stage, canopy temperature was negatively correlated with rice yield, panicle number, and grain number per panicle. This study suggests that canopy temperature can be a convenient and accurate indicator of rice growth and yield prediction.展开更多
The increase in the frequency and intensity of drought events expected in the coming decades in Western Europe may disturb forest biogeochemical cycles and create nutrient deficiencies in trees.One possible origin of ...The increase in the frequency and intensity of drought events expected in the coming decades in Western Europe may disturb forest biogeochemical cycles and create nutrient deficiencies in trees.One possible origin of nutrient deficiency is the disturbance of the partitioning of the green leaf pool during the leaf senescence period between resorption,foliar leaching and senesced leaves.However,the effects of drought events on this partitioning and the consequences for the maintenance of tree nutrition are poorly documented.An experiment in a beech forest in Meuse(France)was conducted to assess the effect of drought events on nutrient canopy exchanges and on the partitioning of the green leaf pool during the leaf senescence period.The aim was to identify potential nutritional consequences of droughts for trees.Monitoring nutrient dynamics,including resorption,chemistry of green and senesced leaves,foliar absorption and leaching in mature beech stands from 2012 to 2019 allowed us to compare the nutrient exchanges for three nondry and three dry years(i.e.,with an intense drought event during the growing season).During dry years,we observed a decrease by almost a third of the potassium(K)partitioning to resorption(i.e.resorption efficiency),thus reducing the K reserve in trees for the next growing season.This result suggests that with the increased drought frequency and intensity expected for the coming decades,there will be a risk of potassium deficiency in trees,as already observed in a rainfall exclusion experiment on the same study site.Reduced foliar leaching and higher parititioning to the senesced leaves for K and phosphorus(P)were also observed.In addition,a slight increase in nitrogen(N)resorption efficiency occurred during dry years which is more likely to improve tree nutrition.The calcium(Ca)negative resorption decreased,with no apparent consequence in our study site.Our results show that nutrient exchanges in the canopy and the partitioning of the green leaf pool can be modified by drought events,and may have consequences on tree nutrition.展开更多
Control of dust in underground coal mines is critical for mitigating both safety and health hazards.For decades,the National Institute of Occupational Safety and Health(NIOSH)has led research to evaluate the effective...Control of dust in underground coal mines is critical for mitigating both safety and health hazards.For decades,the National Institute of Occupational Safety and Health(NIOSH)has led research to evaluate the effectiveness of various dust control technologies in coal mines.Recent studies have included the evaluation of auxiliary scrubbers to reduce respirable dust downstream of active mining and the use of canopy air curtains(CACs)to reduce respirable dust in key operator positions.While detailed dust characterization was not a focus of such studies,this is a growing area of interest.Using preserved filter samples from three previous NIOSH studies,the current work aims to explore the effect of two different scrubbers(one wet and one dry)and a roof bolter CAC on respirable dust composition and particle size distribution.For this,the preserved filter samples were analyzed by thermogravimetric analysis and/or scanning electron microscopy with energy dispersive X-ray.Results indicate that dust composition was not appreciably affected by either scrubber or the CAC.However,the wet scrubber and CAC appeared to decrease the overall particle size distribution.Such an effect of the dry scrubber was not consistently observed,but this is probably related to the particular sampling location downstream of the scrubber which allowed for significant mixing of the scrubber exhaust and other return air.Aside from the insights gained with respect to the three specific dust control case studies revisited here,this work demonstrates the value of preserved dust samples for follow-up investigation more broadly.展开更多
Crop water stress index(CWSI)is widely used for efficient irrigation management.Precise canopy temperature(T_(c))measurement is necessary to derive a reliable CWSI.The objective of this research was to investigate the...Crop water stress index(CWSI)is widely used for efficient irrigation management.Precise canopy temperature(T_(c))measurement is necessary to derive a reliable CWSI.The objective of this research was to investigate the influences of atmospheric conditions,settled height,view angle of infrared thermography,and investigating time of temperature measuring on the performance of the CWSI.Three irrigation treatments were used to create different soil water conditions during the 2020-2021 and 2021-2022 winter wheat-growing seasons.The CWSI was calculated using the CWSI-E(an empirical approach)and CWSI-T(a theoretical approach)based on the T_(c).Weather conditions were recorded continuously throughout the experimental period.The results showed that atmospheric conditions influenced the estimation of the CWSI;when the vapor pressure deficit(VPD)was>2000 Pa,the estimated CWSI was related to soil water conditions.The height of the installed infrared thermograph influenced the T_(c)values,and the differences among the T_(c)values measured at height of 3,5,and 10 m was smaller in the afternoon than in the morning.However,the lens of the thermometer facing south recorded a higher T_(c)than those facing east or north,especially at a low height,indicating that the direction of the thermometer had a significant influence on T_(c).There was a large variation in CWSI derived at different times of the day,and the midday measurements(12:00-15:00)were the most reliable for estimating CWSI.Negative linear relationships were found between the transpiration rate and CWSI-E(R^(2)of 0.3646-0.5725)and CWSI-T(R^(2)of 0.5407-0.7213).The relations between fraction of available soil water(FASW)with CWSI-T was higher than that with CWSI-E,indicating CWSI-T was more accurate for predicting crop water status.In addition,The R^(2)between CWSI-T and FASW at 14:00 was higher than that at other times,indicating that 14:00 was the optimal time for using the CWSI for crop water status monitoring.Relative higher yield of winter wheat was obtained with average seasonal values of CWSI-E and CWSI-T around 0.23 and 0.25-0.26,respectively.The CWSI-E values were more easily influenced by meteorological factors and the timing of the measurements,and using the theoretical approach to derive the CWSI was recommended for precise irrigation water management.展开更多
Fuzzy C-Means(FCM)is an effective and widely used clustering algorithm,but there are still some problems.considering the number of clusters must be determined manually,the local optimal solutions is easily influenced ...Fuzzy C-Means(FCM)is an effective and widely used clustering algorithm,but there are still some problems.considering the number of clusters must be determined manually,the local optimal solutions is easily influenced by the random selection of initial cluster centers,and the performance of Euclid distance in complex high-dimensional data is poor.To solve the above problems,the improved FCM clustering algorithm based on density Canopy and Manifold learning(DM-FCM)is proposed.First,a density Canopy algorithm based on improved local density is proposed to automatically deter-mine the number of clusters and initial cluster centers,which improves the self-adaptability and stability of the algorithm.Then,considering that high-dimensional data often present a nonlinear structure,the manifold learning method is applied to construct a manifold spatial structure,which preserves the global geometric properties of complex high-dimensional data and improves the clustering effect of the algorithm on complex high-dimensional datasets.Fowlkes-Mallows Index(FMI),the weighted average of homogeneity and completeness(V-measure),Adjusted Mutual Information(AMI),and Adjusted Rand Index(ARI)are used as performance measures of clustering algorithms.The experimental results show that the manifold learning method is the superior distance measure,and the algorithm improves the clustering accuracy and performs superiorly in the clustering of low-dimensional and complex high-dimensional data.展开更多
The accurate and rapid estimation of canopy nitrogen content(CNC)in crops is the key to optimizing in-season nitrogen fertilizer application in precision agriculture.However,the determination of CNC from field samplin...The accurate and rapid estimation of canopy nitrogen content(CNC)in crops is the key to optimizing in-season nitrogen fertilizer application in precision agriculture.However,the determination of CNC from field sampling data for leaf area index(LAI),canopy photosynthetic pigments(CPP;including chlorophyll a,chlorophyll b and carotenoids)and leaf nitrogen concentration(LNC)can be time-consuming and costly.Here we evaluated the use of high-precision unmanned aerial vehicle(UAV)multispectral imagery for estimating the LAI,CPP and CNC of winter wheat over the whole growth period.A total of 23 spectral features(SFs;five original spectrum bands,17 vegetation indices and the gray scale of the RGB image)and eight texture features(TFs;contrast,entropy,variance,mean,homogeneity,dissimilarity,second moment,and correlation)were selected as inputs for the models.Six machine learning methods,i.e.,multiple stepwise regression(MSR),support vector regression(SVR),gradient boosting decision tree(GBDT),Gaussian process regression(GPR),back propagation neural network(BPNN)and radial basis function neural network(RBFNN),were compared for the retrieval of winter wheat LAI,CPP and CNC values,and a double-layer model was proposed for estimating CNC based on LAI and CPP.The results showed that the inversion of winter wheat LAI,CPP and CNC by the combination of SFs+TFs greatly improved the estimation accuracy compared with that by using only the SFs.The RBFNN and BPNN models outperformed the other machine learning models in estimating winter wheat LAI,CPP and CNC.The proposed double-layer models(R^(2)=0.67-0.89,RMSE=13.63-23.71 mg g^(-1),MAE=10.75-17.59 mg g^(-1))performed better than the direct inversion models(R^(2)=0.61-0.80,RMSE=18.01-25.12 mg g^(-1),MAE=12.96-18.88 mg g^(-1))in estimating winter wheat CNC.The best winter wheat CNC accuracy was obtained by the double-layer RBFNN model with SFs+TFs as inputs(R^(2)=0.89,RMSE=13.63 mg g^(-1),MAE=10.75 mg g^(-1)).The results of this study can provide guidance for the accurate and rapid determination of winter wheat canopy nitrogen content in the field.展开更多
One of the most important objectives for breeders is to develop high-yield cultivars.The increase in crop yield has met with bottlenecks after the first green revolution,and more recent efforts have been focusing on a...One of the most important objectives for breeders is to develop high-yield cultivars.The increase in crop yield has met with bottlenecks after the first green revolution,and more recent efforts have been focusing on achieving high photosynthetic efficiency traits in order to enhance the yield.Leaf shape is a significant agronomic trait of upland cotton that affects plant and canopy architecture,yield,and other production attributes.The major leaf shape types,including normal,sub-okra,okra,and super-okra,with varying levels of lobe severity,are controlled by a multiple allelic series of the D-genome locus L-D_(1).To analyze the effects of L-D_(1)alleles on leaf morphology,photosynthetic related traits and yield of cotton,two sets of near isogenic lines(NILs)with different alleles were constructed in Lumianyan 22(LMY22)and Lumianyan 28(LMY28)backgrounds.The analysis of morphological parameters and the results of virus-induced gene silencing(VIGS)showed that the regulation of leaf shape by L-D_(1)alleles was similar to a gene-dosage effect.Compared with the normal leaf,deeper lobes of the sub-okra leaf improved plant canopy structure by decreasing the leaf area index(LAI)and increasing the light transmittance rate(LTR),and the mid-range LAI of sub-okra leaf also guaranteed the accumulation of cotton biomass.Although the chlorophyll content(SPAD)of sub-okra leaf was lower than those of the other two leaf shapes,the net photosynthetic rate(Pn)of sub-okra leaf was higher than those of okra leaf and normal leaf at most stages.Thus,the improvements in canopy structure,as well as photosynthetic and physiological characteristics,contributed to optimizing the light environment,thereby increasing the total biomass and yield in the lines with a sub-okra leaf shape.Our results suggest that the sub-okra leaf may have practical application in cultivating varieties,and could enhance sustainable and profitable cotton production.展开更多
A collection representing the native range of pecan was planted at the US DA-ARS Southeastern Fruit and Tree Nut Research Station,Byron,GA.The collection(867 trees)is a valuable genetic resource for characterizing imp...A collection representing the native range of pecan was planted at the US DA-ARS Southeastern Fruit and Tree Nut Research Station,Byron,GA.The collection(867 trees)is a valuable genetic resource for characterizing important horticultural traits.Canopy density during leaf fall is important as the seasonal canopy dynamics provides insights to environmental cues and breeding potential of germplasm.The ability of visual raters to estimate canopy density on a subset of the provenance collection(76 trees)as an indicator of leaf shed during autumn along with image analysis values was explored.Mean canopy density using the image analysis software was less compared to visual estimates(11.9%vs 18.4%,respectively).At higher canopy densities,the raters overestimated foliage density,but overall agreement between raters and measured values was good(ρc=0.849 to 0.915),and inter-rater reliability was high(R^(2)=0.910 to 0.953).The provenance from Missouri(MOL),the northernmost provenance,had the lowest canopy density in November,and results show that the higher the latitude of the provenance,the lower the canopy density.Based on regression,the source provenance latitude explained 0.609 of the variation using image analysis,and0.551 to 0.640 when based on the rater estimates of canopy density.Visual assessment of pecan canopy density due to late season leaf fall for comparing pecan genotypes provides accurate and reliable estimates and could be used in future studies of the whole provenance collection.展开更多
Tree species diversity is vital for maintaining ecosystem functions,yet our ability to map the distribution of tree diversity is limited due to difficulties in traditional field-based approaches.Recent developments in...Tree species diversity is vital for maintaining ecosystem functions,yet our ability to map the distribution of tree diversity is limited due to difficulties in traditional field-based approaches.Recent developments in spaceborne remote sensing provide unprecedented opportunities to map and monitor tree diversity more efficiently.Here we built partial least squares regression models using the multispectral surface reflectance acquired by Sentinel-2 satellites and the inventory data from 74 subtropical forest plots to predict canopy tree diversity in a national natural reserve in eastern China.In particular,we evaluated the underappreciated roles of the practical definition of forest canopy and phenological variation in predicting tree diversity by testing three different definitions of canopy trees and comparing models built using satellite imagery of different seasons.Our best models explained 42%–63%variations in observed diversities in cross-validation tests,with higher explanation power for diversity indices that are more sensitive to abundant species.The models built using imageries from early spring and late autumn showed consistently better fits than those built using data from other seasons,highlighting the significant role of transitional phenology in remotely sensing plant diversity.Our results suggested that the cumulative diameter(60%–80%)of the biggest trees is a better way to define the canopy layer than using the subjective fixeddiameter-threshold(5–12 cm)or the cumulative basal area(90%–95%)of the biggest trees.Remarkably,these approaches resulted in contrasting diversity maps that call attention to canopy structure in remote sensing of tree diversity.This study demonstrates the potential of mapping and monitoring tree diversity using the Sentinal-2 data in species-rich forests.展开更多
Verticillium wilt(VW)is a common soilborne disease of cotton.It occurs mainly in the seedling and bollopening stages and severely impairs the yield and quality of the fiber.Rapid and accurate identification and evalua...Verticillium wilt(VW)is a common soilborne disease of cotton.It occurs mainly in the seedling and bollopening stages and severely impairs the yield and quality of the fiber.Rapid and accurate identification and evaluation of VW severity(VWS)forms the basis of field cotton VW control,which has great significance to cotton production.Cotton VWS values are conventionally measured using in-field observations and laboratory test diagnoses,which require abundant time and professional expertise.Remote and proximal sensing using imagery and spectrometry have great potential for this purpose.In this study,we performed in situ investigations at three experimental sites in 2019 and 2021 and collected VWS values,in situ images,and spectra of 361 cotton canopies.To estimate cotton VWS values at the canopy scale,we developed two deep learning approaches that use in situ images and spectra,respectively.For the imagery-based method,given the high complexity of the in situ environment,we first transformed the task of healthy and diseased leaf recognition to the task of cotton field scene classification and then built a cotton field scenes(CFS)dataset with over 1000 images for each scene-unit type.We performed pretrained convolutional neural networks(CNNs)training and validation using the CFS dataset and then used the networks after training to classify scene units for each canopy.The results showed that the Dark Net-19 model achieved satisfactory performance in CFS classification and VWS values estimation(R^(2)=0.91,root-mean-square error(RMSE)=6.35%).For the spectroscopy-based method,we first designed a one-dimensional regression network(1D CNN)with four convolutional layers.After dimensionality reduction by sensitive-band selection and principal component analysis,we fitted the 1D CNN with varying numbers of principal components(PCs).The 1D CNN model with the top 20 PCs performed best(R^(2)=0.93,RMSE=5.77%).These deep learning-driven approaches offer the potential of assessing crop disease severity from spatial and spectral perspectives.展开更多
基金supported by the National Key Research and Development Program of China(2022YFD1500404)the National Natural Science Foundation of China(31801310)+1 种基金the Natural Science Projects of Universities in Jiangsu Province,China(21KJA210001)a project funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions(PAPD),China。
文摘Canopy temperature strongly influences crop yield formation and is closely related to plant physiological traits.However, the effects of nitrogen treatment on canopy temperature and rice growth have yet to be comprehensively examined. We conducted a two-year field experiment with three rice varieties(HD-5, NJ-9108, and YJ-805) and three nitrogen treatments(zero-N control(CK), 200 kg ha~(–1)(MN), and 300 kg ha~(–1)(HN)). We measured canopy temperature using a drone equipped with a high-precision camera at the six stages of the growth period. Generally,canopy temperature was significantly higher for CK than for MN and HN during the tillering, jointing, booting, and heading stages. The temperature was not significantly different among the nitrogen treatments between the milky and waxy stages. The canopy temperature of different rice varieties was found to follow the order: HD-5>NJ-9108>YJ-805, but the difference was not significant. The canopy temperature of rice was mainly related to plant traits, such as shoot fresh weight(correlation coefficient r=–0.895), plant water content(–0.912), net photosynthesis(–0.84), stomatal conductance(–0.91), transpiration rate(–0.90), and leaf stomatal area(–0.83). A structural equation model(SEM) showed that nitrogen fertilizer was an important factor affecting the rice canopy temperature.Our study revealed:(1) A suite of plant traits was associated with the nitrogen effects on canopy temperature,(2) the heading stage was the best time to observe rice canopy temperature, and(3) at that stage, canopy temperature was negatively correlated with rice yield, panicle number, and grain number per panicle. This study suggests that canopy temperature can be a convenient and accurate indicator of rice growth and yield prediction.
基金supported by the Lorraine University of Excellence via the DEEPSURF project(ANR 70315-IDEX-04-LUE)。
文摘The increase in the frequency and intensity of drought events expected in the coming decades in Western Europe may disturb forest biogeochemical cycles and create nutrient deficiencies in trees.One possible origin of nutrient deficiency is the disturbance of the partitioning of the green leaf pool during the leaf senescence period between resorption,foliar leaching and senesced leaves.However,the effects of drought events on this partitioning and the consequences for the maintenance of tree nutrition are poorly documented.An experiment in a beech forest in Meuse(France)was conducted to assess the effect of drought events on nutrient canopy exchanges and on the partitioning of the green leaf pool during the leaf senescence period.The aim was to identify potential nutritional consequences of droughts for trees.Monitoring nutrient dynamics,including resorption,chemistry of green and senesced leaves,foliar absorption and leaching in mature beech stands from 2012 to 2019 allowed us to compare the nutrient exchanges for three nondry and three dry years(i.e.,with an intense drought event during the growing season).During dry years,we observed a decrease by almost a third of the potassium(K)partitioning to resorption(i.e.resorption efficiency),thus reducing the K reserve in trees for the next growing season.This result suggests that with the increased drought frequency and intensity expected for the coming decades,there will be a risk of potassium deficiency in trees,as already observed in a rainfall exclusion experiment on the same study site.Reduced foliar leaching and higher parititioning to the senesced leaves for K and phosphorus(P)were also observed.In addition,a slight increase in nitrogen(N)resorption efficiency occurred during dry years which is more likely to improve tree nutrition.The calcium(Ca)negative resorption decreased,with no apparent consequence in our study site.Our results show that nutrient exchanges in the canopy and the partitioning of the green leaf pool can be modified by drought events,and may have consequences on tree nutrition.
基金CDC/NIOSH for funding this research(75D30119C05529)。
文摘Control of dust in underground coal mines is critical for mitigating both safety and health hazards.For decades,the National Institute of Occupational Safety and Health(NIOSH)has led research to evaluate the effectiveness of various dust control technologies in coal mines.Recent studies have included the evaluation of auxiliary scrubbers to reduce respirable dust downstream of active mining and the use of canopy air curtains(CACs)to reduce respirable dust in key operator positions.While detailed dust characterization was not a focus of such studies,this is a growing area of interest.Using preserved filter samples from three previous NIOSH studies,the current work aims to explore the effect of two different scrubbers(one wet and one dry)and a roof bolter CAC on respirable dust composition and particle size distribution.For this,the preserved filter samples were analyzed by thermogravimetric analysis and/or scanning electron microscopy with energy dispersive X-ray.Results indicate that dust composition was not appreciably affected by either scrubber or the CAC.However,the wet scrubber and CAC appeared to decrease the overall particle size distribution.Such an effect of the dry scrubber was not consistently observed,but this is probably related to the particular sampling location downstream of the scrubber which allowed for significant mixing of the scrubber exhaust and other return air.Aside from the insights gained with respect to the three specific dust control case studies revisited here,this work demonstrates the value of preserved dust samples for follow-up investigation more broadly.
基金supported by the Project of State Grid Hebei Electric Power Co.,Ltd.(SGHEYX00SCJS2100077).
文摘Crop water stress index(CWSI)is widely used for efficient irrigation management.Precise canopy temperature(T_(c))measurement is necessary to derive a reliable CWSI.The objective of this research was to investigate the influences of atmospheric conditions,settled height,view angle of infrared thermography,and investigating time of temperature measuring on the performance of the CWSI.Three irrigation treatments were used to create different soil water conditions during the 2020-2021 and 2021-2022 winter wheat-growing seasons.The CWSI was calculated using the CWSI-E(an empirical approach)and CWSI-T(a theoretical approach)based on the T_(c).Weather conditions were recorded continuously throughout the experimental period.The results showed that atmospheric conditions influenced the estimation of the CWSI;when the vapor pressure deficit(VPD)was>2000 Pa,the estimated CWSI was related to soil water conditions.The height of the installed infrared thermograph influenced the T_(c)values,and the differences among the T_(c)values measured at height of 3,5,and 10 m was smaller in the afternoon than in the morning.However,the lens of the thermometer facing south recorded a higher T_(c)than those facing east or north,especially at a low height,indicating that the direction of the thermometer had a significant influence on T_(c).There was a large variation in CWSI derived at different times of the day,and the midday measurements(12:00-15:00)were the most reliable for estimating CWSI.Negative linear relationships were found between the transpiration rate and CWSI-E(R^(2)of 0.3646-0.5725)and CWSI-T(R^(2)of 0.5407-0.7213).The relations between fraction of available soil water(FASW)with CWSI-T was higher than that with CWSI-E,indicating CWSI-T was more accurate for predicting crop water status.In addition,The R^(2)between CWSI-T and FASW at 14:00 was higher than that at other times,indicating that 14:00 was the optimal time for using the CWSI for crop water status monitoring.Relative higher yield of winter wheat was obtained with average seasonal values of CWSI-E and CWSI-T around 0.23 and 0.25-0.26,respectively.The CWSI-E values were more easily influenced by meteorological factors and the timing of the measurements,and using the theoretical approach to derive the CWSI was recommended for precise irrigation water management.
基金The National Natural Science Foundation of China(No.62262011)the Natural Science Foundation of Guangxi(No.2021JJA170130).
文摘Fuzzy C-Means(FCM)is an effective and widely used clustering algorithm,but there are still some problems.considering the number of clusters must be determined manually,the local optimal solutions is easily influenced by the random selection of initial cluster centers,and the performance of Euclid distance in complex high-dimensional data is poor.To solve the above problems,the improved FCM clustering algorithm based on density Canopy and Manifold learning(DM-FCM)is proposed.First,a density Canopy algorithm based on improved local density is proposed to automatically deter-mine the number of clusters and initial cluster centers,which improves the self-adaptability and stability of the algorithm.Then,considering that high-dimensional data often present a nonlinear structure,the manifold learning method is applied to construct a manifold spatial structure,which preserves the global geometric properties of complex high-dimensional data and improves the clustering effect of the algorithm on complex high-dimensional datasets.Fowlkes-Mallows Index(FMI),the weighted average of homogeneity and completeness(V-measure),Adjusted Mutual Information(AMI),and Adjusted Rand Index(ARI)are used as performance measures of clustering algorithms.The experimental results show that the manifold learning method is the superior distance measure,and the algorithm improves the clustering accuracy and performs superiorly in the clustering of low-dimensional and complex high-dimensional data.
基金funded by the Key Research and Development Program of Shaanxi Province of China(2022NY-063)the Chinese Universities Scientific Fund(2452020018).
文摘The accurate and rapid estimation of canopy nitrogen content(CNC)in crops is the key to optimizing in-season nitrogen fertilizer application in precision agriculture.However,the determination of CNC from field sampling data for leaf area index(LAI),canopy photosynthetic pigments(CPP;including chlorophyll a,chlorophyll b and carotenoids)and leaf nitrogen concentration(LNC)can be time-consuming and costly.Here we evaluated the use of high-precision unmanned aerial vehicle(UAV)multispectral imagery for estimating the LAI,CPP and CNC of winter wheat over the whole growth period.A total of 23 spectral features(SFs;five original spectrum bands,17 vegetation indices and the gray scale of the RGB image)and eight texture features(TFs;contrast,entropy,variance,mean,homogeneity,dissimilarity,second moment,and correlation)were selected as inputs for the models.Six machine learning methods,i.e.,multiple stepwise regression(MSR),support vector regression(SVR),gradient boosting decision tree(GBDT),Gaussian process regression(GPR),back propagation neural network(BPNN)and radial basis function neural network(RBFNN),were compared for the retrieval of winter wheat LAI,CPP and CNC values,and a double-layer model was proposed for estimating CNC based on LAI and CPP.The results showed that the inversion of winter wheat LAI,CPP and CNC by the combination of SFs+TFs greatly improved the estimation accuracy compared with that by using only the SFs.The RBFNN and BPNN models outperformed the other machine learning models in estimating winter wheat LAI,CPP and CNC.The proposed double-layer models(R^(2)=0.67-0.89,RMSE=13.63-23.71 mg g^(-1),MAE=10.75-17.59 mg g^(-1))performed better than the direct inversion models(R^(2)=0.61-0.80,RMSE=18.01-25.12 mg g^(-1),MAE=12.96-18.88 mg g^(-1))in estimating winter wheat CNC.The best winter wheat CNC accuracy was obtained by the double-layer RBFNN model with SFs+TFs as inputs(R^(2)=0.89,RMSE=13.63 mg g^(-1),MAE=10.75 mg g^(-1)).The results of this study can provide guidance for the accurate and rapid determination of winter wheat canopy nitrogen content in the field.
基金supported by the State Key Laboratory of Cotton Biology Open Fund,China(CB2021A18)the Youth Scientific Research Foundation of Shandong Academy of Agricultural Sciences,China(2016YQN09)+1 种基金the Improved Variety Project of Shandong Province,China(2020LZGC002)the China Agriculture Research System of MOF and MARA(CARS-15-05).
文摘One of the most important objectives for breeders is to develop high-yield cultivars.The increase in crop yield has met with bottlenecks after the first green revolution,and more recent efforts have been focusing on achieving high photosynthetic efficiency traits in order to enhance the yield.Leaf shape is a significant agronomic trait of upland cotton that affects plant and canopy architecture,yield,and other production attributes.The major leaf shape types,including normal,sub-okra,okra,and super-okra,with varying levels of lobe severity,are controlled by a multiple allelic series of the D-genome locus L-D_(1).To analyze the effects of L-D_(1)alleles on leaf morphology,photosynthetic related traits and yield of cotton,two sets of near isogenic lines(NILs)with different alleles were constructed in Lumianyan 22(LMY22)and Lumianyan 28(LMY28)backgrounds.The analysis of morphological parameters and the results of virus-induced gene silencing(VIGS)showed that the regulation of leaf shape by L-D_(1)alleles was similar to a gene-dosage effect.Compared with the normal leaf,deeper lobes of the sub-okra leaf improved plant canopy structure by decreasing the leaf area index(LAI)and increasing the light transmittance rate(LTR),and the mid-range LAI of sub-okra leaf also guaranteed the accumulation of cotton biomass.Although the chlorophyll content(SPAD)of sub-okra leaf was lower than those of the other two leaf shapes,the net photosynthetic rate(Pn)of sub-okra leaf was higher than those of okra leaf and normal leaf at most stages.Thus,the improvements in canopy structure,as well as photosynthetic and physiological characteristics,contributed to optimizing the light environment,thereby increasing the total biomass and yield in the lines with a sub-okra leaf shape.Our results suggest that the sub-okra leaf may have practical application in cultivating varieties,and could enhance sustainable and profitable cotton production.
基金supported by the USDA-ARS through CRIS project 6606-21220-014–00Dthe National Institute of Food and Agriculture–Specialty Crops Research Initiative grant 2016-51181-25408“Coordinated development of genetic tools for pecan”。
文摘A collection representing the native range of pecan was planted at the US DA-ARS Southeastern Fruit and Tree Nut Research Station,Byron,GA.The collection(867 trees)is a valuable genetic resource for characterizing important horticultural traits.Canopy density during leaf fall is important as the seasonal canopy dynamics provides insights to environmental cues and breeding potential of germplasm.The ability of visual raters to estimate canopy density on a subset of the provenance collection(76 trees)as an indicator of leaf shed during autumn along with image analysis values was explored.Mean canopy density using the image analysis software was less compared to visual estimates(11.9%vs 18.4%,respectively).At higher canopy densities,the raters overestimated foliage density,but overall agreement between raters and measured values was good(ρc=0.849 to 0.915),and inter-rater reliability was high(R^(2)=0.910 to 0.953).The provenance from Missouri(MOL),the northernmost provenance,had the lowest canopy density in November,and results show that the higher the latitude of the provenance,the lower the canopy density.Based on regression,the source provenance latitude explained 0.609 of the variation using image analysis,and0.551 to 0.640 when based on the rater estimates of canopy density.Visual assessment of pecan canopy density due to late season leaf fall for comparing pecan genotypes provides accurate and reliable estimates and could be used in future studies of the whole provenance collection.
基金supported by the National Natural Science Foundation of China(No. 32101280)the Natural Science Foundation of Shanghai(No. 21ZR1420900)the Key R&D Project of Zhejiang(No. 2023C03138)
文摘Tree species diversity is vital for maintaining ecosystem functions,yet our ability to map the distribution of tree diversity is limited due to difficulties in traditional field-based approaches.Recent developments in spaceborne remote sensing provide unprecedented opportunities to map and monitor tree diversity more efficiently.Here we built partial least squares regression models using the multispectral surface reflectance acquired by Sentinel-2 satellites and the inventory data from 74 subtropical forest plots to predict canopy tree diversity in a national natural reserve in eastern China.In particular,we evaluated the underappreciated roles of the practical definition of forest canopy and phenological variation in predicting tree diversity by testing three different definitions of canopy trees and comparing models built using satellite imagery of different seasons.Our best models explained 42%–63%variations in observed diversities in cross-validation tests,with higher explanation power for diversity indices that are more sensitive to abundant species.The models built using imageries from early spring and late autumn showed consistently better fits than those built using data from other seasons,highlighting the significant role of transitional phenology in remotely sensing plant diversity.Our results suggested that the cumulative diameter(60%–80%)of the biggest trees is a better way to define the canopy layer than using the subjective fixeddiameter-threshold(5–12 cm)or the cumulative basal area(90%–95%)of the biggest trees.Remarkably,these approaches resulted in contrasting diversity maps that call attention to canopy structure in remote sensing of tree diversity.This study demonstrates the potential of mapping and monitoring tree diversity using the Sentinal-2 data in species-rich forests.
基金funded by Key Research Program of Frontier Sciences,CAS(ZDBS-LY-DQC012)the National Natural Science Foundation of China(41971321,41830108)+2 种基金XPCC Science and Technology Project(2022CB002-01)Open Fund of Key Laboratory of Oasis Eco-agriculture,XPCC(201801 and 202003)supported by Youth Innovation Promotion Association,CAS(Y2021047)。
文摘Verticillium wilt(VW)is a common soilborne disease of cotton.It occurs mainly in the seedling and bollopening stages and severely impairs the yield and quality of the fiber.Rapid and accurate identification and evaluation of VW severity(VWS)forms the basis of field cotton VW control,which has great significance to cotton production.Cotton VWS values are conventionally measured using in-field observations and laboratory test diagnoses,which require abundant time and professional expertise.Remote and proximal sensing using imagery and spectrometry have great potential for this purpose.In this study,we performed in situ investigations at three experimental sites in 2019 and 2021 and collected VWS values,in situ images,and spectra of 361 cotton canopies.To estimate cotton VWS values at the canopy scale,we developed two deep learning approaches that use in situ images and spectra,respectively.For the imagery-based method,given the high complexity of the in situ environment,we first transformed the task of healthy and diseased leaf recognition to the task of cotton field scene classification and then built a cotton field scenes(CFS)dataset with over 1000 images for each scene-unit type.We performed pretrained convolutional neural networks(CNNs)training and validation using the CFS dataset and then used the networks after training to classify scene units for each canopy.The results showed that the Dark Net-19 model achieved satisfactory performance in CFS classification and VWS values estimation(R^(2)=0.91,root-mean-square error(RMSE)=6.35%).For the spectroscopy-based method,we first designed a one-dimensional regression network(1D CNN)with four convolutional layers.After dimensionality reduction by sensitive-band selection and principal component analysis,we fitted the 1D CNN with varying numbers of principal components(PCs).The 1D CNN model with the top 20 PCs performed best(R^(2)=0.93,RMSE=5.77%).These deep learning-driven approaches offer the potential of assessing crop disease severity from spatial and spectral perspectives.