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Microarray,SAGE and their applications to cardiovascular diseases 被引量:5
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作者 SHUI QING YE, TERA LAVOIE, DAVID C USHER, LI Q. ZHANG1 Division of Pulmonary and Critical Care Medicine, Johns Hopkins University, School of Medicine, Baltimore, MD 21224, USA2Department of Biological Science, University of Delaware, Newark, DE 19716, USA 《Cell Research》 SCIE CAS CSCD 2002年第2期105-115,共11页
The wealth of DNA data generated by the human genome project coupling with recently invented high-throughput gene expression profiling techniques has dramatically sped up the process for biomedical researchers on eluc... The wealth of DNA data generated by the human genome project coupling with recently invented high-throughput gene expression profiling techniques has dramatically sped up the process for biomedical researchers on elucidating the role of genes in human diseases. One powerful method to reveal insight into gene functions is the systematic analysis of gene expression. Two popular high-throughput gene expression technologies, microarray and Serial Analysis of Gene Expression (SAGE) are capable of producing large amounts of gene expression data with the potential of providing novel insights into fundamental disease processes, especially complex syndromes such as cardiovascular disease, whose etiologies are due to multiple genetic factors and their interplay with the environment. Microarray and SAGE have already been used to examine gene expression patterns of cell-culture, animal and human tissues models of cardiovascular diseases. In this review, we will first give a brief introduction of microarray and SAGE technologies and point out their limitations. We will then discuss the major discoveries and the new biological insightsthat have emerged from their applications to cardiovascular diseases. Finally we will touch upon potential challenges and future developments in this area. 展开更多
关键词 Gene Expression Cardiovascular Diseases dna Complementary Humans oligonucleotide array sequence Analysis Research Support Non-U.S. Gov't Research Support U.S. Gov't P.H.S.
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痘苗病毒寡核苷酸检测芯片的设计及研制 被引量:7
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作者 王艳 马文丽 +5 位作者 毛向明 吴清华 李凌 王洪敏 肖维威 郑文岭 《第一军医大学学报》 CSCD 北大核心 2004年第2期180-183,共4页
目的对痘苗病毒进行寡核苷酸检测芯片的初步研究,为建立寡核苷酸芯片检测该类病毒提供初步研究依据。方法根据痘苗病毒特异基因设计寡核苷酸探针,人工合成探针后制备寡核苷酸芯片。在病毒感染的不同阶段提取病毒样品DNA及阴性样品DNA,... 目的对痘苗病毒进行寡核苷酸检测芯片的初步研究,为建立寡核苷酸芯片检测该类病毒提供初步研究依据。方法根据痘苗病毒特异基因设计寡核苷酸探针,人工合成探针后制备寡核苷酸芯片。在病毒感染的不同阶段提取病毒样品DNA及阴性样品DNA,采用限制性显示技术标记,标记样品与芯片杂交后,用Agilent芯片扫描仪检测杂交结果。结果芯片与病毒样品杂交有较强的杂交信号,而与阴性样品杂交除阳性探针外均无信号。结论病毒样品与阴性样品杂交信号区别明显,在病毒感染的各个时段也都有明显的杂交信号,反映了寡核苷酸芯片具有较高的特异性和灵敏度。 展开更多
关键词 寡核苷酸 设计 痘苗病毒 核酸探针 dna芯片 检测 疫苗 天花
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炭疽芽孢杆菌基因芯片探针的制备
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作者 姜昌丽 刘凌 +5 位作者 杜凌琳 李云 滕毅 王超 谭德勇 王惠萱 《国际检验医学杂志》 CAS 2011年第14期1531-1532,共2页
目的制备炭疽芽孢杆菌(BA)基因芯片探针,应用于BA基因芯片的检测。方法采用PCR方法,以BA疫苗株A16R基因组DNA为模板,扩增pXO1质粒上的8个特异性片段,连接至pMD19-T Simple载体,构建分别包含8个探针序列的重组质粒,以其为PCR扩增模板获... 目的制备炭疽芽孢杆菌(BA)基因芯片探针,应用于BA基因芯片的检测。方法采用PCR方法,以BA疫苗株A16R基因组DNA为模板,扩增pXO1质粒上的8个特异性片段,连接至pMD19-T Simple载体,构建分别包含8个探针序列的重组质粒,以其为PCR扩增模板获取探针DNA。结果基因测序证明,成功获得BA的3个探针。结论 BA基因探针的成功获取,为炭疽芽孢杆菌基因芯片的制备奠定了基础。 展开更多
关键词 芽孢杆菌 炭疽 质粒 寡核苷酸序列分析 dna探针
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HBV拉米夫定耐药株及BCP、Pre—C突变株芯片检测方法的应用研究
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作者 李兵 周伯平 +9 位作者 彭劲甫 陈立炎 张文 唐蔚 王召钦 尹忠华 徐六妹 罗瑞玲 李晓鹤 刘赛云 《中华实验和临床病毒学杂志》 CAS CSCD 北大核心 2009年第4期309-312,共4页
目的构建针对HBV拉米夫定耐药株及c区启动子(basal core promoter,BCP)、前C区(Pre-C)突变株,多位点突变的基因芯片检测方法。并与DNA测序法比较,以了解该芯片的灵敏度、特异性、稳定性等性能并初步应用于临床实践。方法该基因... 目的构建针对HBV拉米夫定耐药株及c区启动子(basal core promoter,BCP)、前C区(Pre-C)突变株,多位点突变的基因芯片检测方法。并与DNA测序法比较,以了解该芯片的灵敏度、特异性、稳定性等性能并初步应用于临床实践。方法该基因芯片能对HBVDNA及P区(DNA多聚酶区):180、204、207三个拉米夫定耐药突变位点;C区启动子(basal core promoter,BCP)及前C区(Pre—c):nt1896、nt1899、nt1862、nt1764、nt17625个突变热点,共8个HBV突变位点进行检测,并用测序法对该基因芯片进行验证。结果①检测HBVDNA方面,两种方法检测结果100%相符。②检测突变位点方面:总体统计32份阳性血清共有256(32×8)个突变位点。两种方法检测结果有251个突变位点完全相符;5个突变位点不完全相符,基因芯片法检测为混合型,测序法检测为野生型或突变型之一。结论结果提示该基因芯片和DNA测序法检测结果阳性率无差异,特异性与DNA测序法相当,检测混合株有更大优势。 展开更多
关键词 寡核苷酸探针 肝炎病毒 乙型 序列分析 dna 突变
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A NEW SILENT MUTATION FOUND IN THE CHINESE PAH LOCUS AND ITS ROLE IN THE PRENATAL DIAGNOSIS OF PHENYLKETONURIA
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作者 黄淑帧 周霞娣 +2 位作者 任兆瑞 曾溢滔 胡流清 《Science China Chemistry》 SCIE EI CAS 1991年第5期606-610,共5页
A silent mutation or sequence polymorphism, A to T substitution at codon 399 in exon11 of the PAH gene from a Chinese PKU patient, was found by sequence analysis. The fre-quencies of this new mutation in normal and ab... A silent mutation or sequence polymorphism, A to T substitution at codon 399 in exon11 of the PAH gene from a Chinese PKU patient, was found by sequence analysis. The fre-quencies of this new mutation in normal and abnormal (PKU) genes were 0.005 and 0.09,respectively, based on the analyses of 100 normal individuals and 39 PKU patients usingDNA amplification with polymerase chain reaction (PCR) and oligonucleotide hybridizationmethods. This silent mutation can be used as a "genetic marker" for PKU prenatal diagno-sis. Recently, a fetus at risk for PKU, who could not be completely predicted by RFLPslinkage analysis, was prenatally diagnosed with this genetic marker. 展开更多
关键词 PHENYLKETONURIA phenylalanine HYDROXYLASE (PAH) dna sequence polymorphism prenatal diagnosis SILENT MUTATION polymerase chain reaction (PCR) allele-specific oligonucleotide (ASO) probe CHINESE
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