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Development of an One-step Reverse Transcription Loop-mediated Isothermal Amplification Method for Rapid Detection of Bovine Viral Diarrhea Virus 被引量:2
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作者 袁万哲 王腾 +3 位作者 王建昌 李丽敏 张秀媛 孙继国 《Agricultural Science & Technology》 CAS 2014年第10期1826-1829,共4页
Objective] This study aimed to develop a reverse transcription loop-medi-ated isothermal amplification (RT-LAMP) method for detecting BVDV. [Method] Since gp48 gene of BVDV is among the most conserved regions, a set... Objective] This study aimed to develop a reverse transcription loop-medi-ated isothermal amplification (RT-LAMP) method for detecting BVDV. [Method] Since gp48 gene of BVDV is among the most conserved regions, a set of four primers was designed to amplify six target sequences at the gp48 gene region for the RT-LAMP assay. The optimization of the RT-LAMP reaction was performed by evaluat-ing reaction temperature and reaction time. [Result] The RT-LAMP aasay was suc-cessful y conducted at 56 ℃ within 40 min under isothermal conditions, and the re-sults could be detected as ladder-like bands using agarose gel electrophoresis. The RT-LAMP assay is highly sensitive and able to detect 3.74 ×100 copies/μl of BVDV RNA, as no cross-reaction was observed with other viruses. [Conclusion] Overal , the newly established RT-LAMP assay indicates the potential application in both clinical diagnosis and field surveil ance of BVDV. 展开更多
关键词 Bovine viral diarrhea virus (BVDV) reverse transcription loop-mediatedisothermal amplification (RT-LAMP) DETECTION
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The Application of Reverse Transcription-loop-mediated Isothermal Amplification for the Rapid Detection of Maize Chlorotic Dwarf Virus
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作者 徐颖 张峰 +1 位作者 于莹 邱志君 《Agricultural Science & Technology》 CAS 2017年第12期2450-2453,共4页
Maize chlorotic dwarf virus (MCDV) is a quarantine pest as approved by Chinese government. A rapid, sensitive and specific MCDV detection method using reverse transcription-loop-mediated isothermal amplification (R... Maize chlorotic dwarf virus (MCDV) is a quarantine pest as approved by Chinese government. A rapid, sensitive and specific MCDV detection method using reverse transcription-loop-mediated isothermal amplification (RT-LAMP) was estab- lished in this study. Based on the sequence of MCDV coat protein coding gene, specific primers were designed and similar sensitivities were observed between RT- LAMP and RT-PCR, except that RT-LAMP was quicker, and the reaction could be finished within 1 h. In addition, the presence or absence of the fluorescent display in daylight allows naked easy detection of the amplification of MCDV genomic RNA using calcein. The RT-LAMP assay was applied successfully to detect MCDV in maize seeds, and the result by the addition of calcein was consistent with the result detected by the real time turbidimeter. 展开更多
关键词 Maize chlorotic dwarf virus (MCDV) reverse transcription loop-mediatedisothermal amplification (RT-LAMP) Rapid detection
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Reverse Genetic Analysis of Transcription Factor Os Hox9, a Member of Homeobox Family, in Rice 被引量:5
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作者 AI Li-ping SHEN Ao +4 位作者 GAO Zhi-chao LI Zheng-long SUN Qiong-lin LI Ying-ying LUAN Wei-jiang 《Rice science》 SCIE 2014年第6期312-317,共6页
Homeobox transcription factors participate in the growth and development of plants by regulating cell differentiation, morphogenesis and environmental signal response. To reveal the functions of these transcription fa... Homeobox transcription factors participate in the growth and development of plants by regulating cell differentiation, morphogenesis and environmental signal response. To reveal the functions of these transcription factors in rice, we constructed the RNAi vectors of OsHox9, a member of homeobox family, and analyzed the function of OsHox9 using reverse genetics. The plant height and tillering number of RNAi transgenic plants decreased compared with those of wild-type plants. Reverse transcdption-polymerase chain reaction analysis showed that OsHox9 expression reduced in the transgenic plants with phenotypic variance, whereas that in the transgenic plants without phenotypic variance was similar to that in the wild-type plants. This result suggests that the phenotypes of the transgenic plants were caused by RNAi effects. The tissue-specificity of OsHox9 expression indicated that it was expressed in different organs, with high expression in stem apical medstem and young panicles. Subcellular location of OsHox9 demonstrated that it was localized on the cell membrane. 展开更多
关键词 expression analysis homeobox transcription factor subcellular location reverse genetics RICE RNA interference
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Evaluation of Reverse Transcription Loop-Mediated Isothermal Amplification assays for Rapid Detection of Human Enterovirus 71 and Coxsackievirus A16 in Clinical Samples 被引量:9
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作者 Hong Zhang Kai Nie +8 位作者 Yunzhi Liu Le Luo Wei Huang Shuaifeng Zhou Mengjie Yang Yu Chen Jianmin Luo Lidong Gao Xuejun Ma 《Advances in Infectious Diseases》 2012年第4期110-118,共9页
A sensitive reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for human enterovirus 71 (EV71) and Coxsackievirus A16 (CVA16) infection was further evaluated. The one step reaction was perfor... A sensitive reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for human enterovirus 71 (EV71) and Coxsackievirus A16 (CVA16) infection was further evaluated. The one step reaction was performed in a single tube at 65?C for 45 min for EV71 and 35 min for CVA16. The detection limits of RT-LAMP assays for both EV71 and CVA16 were 0.1 of a 50% tissue culture infective dose (TCID50) per reaction, based on 10—Fold dilutions of a titrated EV71 or CVA16 strain. The specific assay showed there were no cross-reactions with Coxsackievirus A (CVA) viruses (CVA 2, 4, 5, 7, 9, 10, 14, and 25), Coxsackievirus B (CVB) viruses (CVB 1, 2, 3, 4, and 5) or ECHO viruses (ECHO 3, 6, 11, and 19). In parallel with commercial quantitative real-time polymerase chain reaction (qRT-PCR) diagnostic kits for EV71 and CVA16, the RT-LAMP assay was evaluated with 515 clinical specimens, the results showed the RT-LAMP assay and the qRT-PCR assay were in complete agreement for 513/515 (99.6%) of the specimens. Two samples with discrepant results from two methods were further verified by nested reverse transcription polymerase chain reaction (nRT-PCR) assay and sequencing to be true positives for CVA16. In conclusion, RT-LAMP assay is demonstrated to be a sensitive and specific assay and have a great potential for the rapid and visual screening of EV71 and CVA16 in China, especially in those resource-limited hospitals and rural clinics of provincial and municipal regions. 展开更多
关键词 Human ENTEROVIRUS 71 Coxsackievirus A16 reverse transcription Loop-Mediated ISOTHERMAL AMPLIFICATION
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Rapid and Sensitive Detection of PRRSV by a Reverse Transcription-Loop-mediated Isothermal Amplification Assay 被引量:7
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作者 Lei Zhang Ye-bing Liu +2 位作者 Lei Chen Jian-huan Wang Yi-bao Ning 《Virologica Sinica》 SCIE CAS CSCD 2011年第4期252-259,共8页
A real-time monitoring reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay was developed for the sensitive and specific detection of prototypic,prevalent North American porcine reproductive an... A real-time monitoring reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay was developed for the sensitive and specific detection of prototypic,prevalent North American porcine reproductive and respiratory syndrome virus (PRRSV) strains.As a higher sensitivity and specificity method than reverse transcription polymerase chain reaction (RT-PCR),the RT-LAMP method only used a turbidimeter,exhibited a detection limit corresponding to a 10-4 dilution of template RNA extracted from 250 μL of 105 of the 50% tissue culture infective dose (TCID50) of PRRSV-containing cells,and no cross-reactivity was observed with other related viruses including porcine circovirus type 2,swine influenza virus,porcine rotavirus and classical swine fever virus.From forty-two field samples,33 samples in the RT-LAMP assay was detected positive,whereas three of which were not detected by RT-PCR.Furthermore,in 33 strains of PRRSV,an identical detection rate was observed with the RT-LAMP assay to what were isolated using porcine alveolar macrophages.These findings demonstrated that the RT-LAMP assay has potential clinical applications for the detection of highly pathogenic PRRSV isolates,especially in developing countries. 展开更多
关键词 reverse transcription loop-mediated isothermal amplification (RT-LAMP) Porcine reproductive and respiratory syndrome virus (PRRSV) Clinical diagnosis Virus detection
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Reverse Transcription-loop-mediated Isothermal Amplification for Detection of Maize Chlorotic Mottle Virus 被引量:4
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作者 Ying XU Yafei XU +2 位作者 Yongfeng LIU Zhijun QIU Wei ZHENG 《Agricultural Science & Technology》 CAS 2017年第1期123-126,共4页
Maize chlorotic mottle virus (MCMV) is a quarantine pest as approved by Chinese government: A rapid, sensitive and specific MCMV detection method using reverse transcription-loop-mediated isothermal amplification ... Maize chlorotic mottle virus (MCMV) is a quarantine pest as approved by Chinese government: A rapid, sensitive and specific MCMV detection method using reverse transcription-loop-mediated isothermal amplification (RT-LAMP) was established in this study. Based on the sequence of MCMV coat protein coding gene, 3 sets of primers were designed and specificity test showed that the second set of primers was specific to MCMV, Similar sensitivities were observed on RT-LAMP and RT-PCR, except that RT-LAMP was quicker, and the reaction could be finished within 1 h. In addition, the presence or absence of the fluorescence under daylight allows naked easy detection of the amplification of MCMV genomic RNA using calcein. The RT-LAMP assay was applied successfully to detect MCMV in maize seeds, and the result by the addition of calcein was consistent with the result detected by the real time turbidimeter. The method is rapid, specific, sensitive without the need for complicated equipment, and is suitable for rapid field detection of MCMV. 展开更多
关键词 Maize chlorotic mottle virus (MCMV) reverse transcription loop-mediated isothermal amplification (RT-LAMP) DETECTION
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Detection of circulating hepatocellular carcinoma cells in peripheral venous blood by reverse transcription-polymerase chain reaction 被引量:5
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作者 Yang Liu Meng-Chao Wu +1 位作者 Guang-Xiang Qian Bai-He Zhang From the Institute of East Hepatobiliary Surgery, Second Military Medical University, Shanghai 200438, China 《Hepatobiliary & Pancreatic Diseases International》 SCIE CAS 2002年第1期72-76,共5页
Objective: To detect circulating hepatocellular carcino-ma by demonstrating hepatocellular carcinoma cells orhepatocyte-associated mRNA in the nuclear cell com-ponent of peripheral blood (PBL).Methods: Peripheral bloo... Objective: To detect circulating hepatocellular carcino-ma by demonstrating hepatocellular carcinoma cells orhepatocyte-associated mRNA in the nuclear cell com-ponent of peripheral blood (PBL).Methods: Peripheral blood (5 ml) samples were ob-tained from 93 patients with hepatocellular carcinoma(HCC) and from 33 control subjects (9 with liver cir-rhosis after hepatitis B,14 with chronic hepatitis B,10with normal liver function). To identify HCC cells inperipheral blood, liver-specific human alpha-fetopro-tein (AFP) mRNA was amplified from total RNA ex-tracted from whole blood by reverse transcription-polymerase chain reaction.Results: AFPmRNA was detected in 50 blood samplesfrom the HCC patients (50/93, 53.8%). In contrast,there were no clinical control patients whose samplesshowed detectable AFPmRNA in PBL. The presence ofAFPmRNA in blood seemed to be correlated with thestage (by TNM classification) of HCC, the serum AFPvalue, and the presence of intrahepatic metastasis,portal vein thrombosis, tumor diameter and/or distantmetastasis. In addition, AFPmRNA was detected in theblood of 21 patients with metastasis at extrahepaticorgans (100%) in contrast to 29 (40.3%)of 72 pa-tients without metastasis.Conclusion: The presence of AFPmRNA in peripheralblood may be an indicator of malignant hepatocytes,which might predict hematogenous spreading metasta-sis of tumor cells in patients with HCC. 展开更多
关键词 liver neoplasms ALPHA-FETOPROTEIN MRNA reverse transcription-polymerase chain reaction
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Quantification of Porcine Follicle-stimulating Hormone Receptor Messenger Ribonucleic Acid by Reverse Transcription competitive Polymerase Chain Reaction
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作者 朱长虹 《Journal of Huazhong University of Science and Technology(Medical Sciences)》 SCIE CAS 2000年第3期177-182,共6页
An easy and reliable method was developed for construction and quantification of competitive templates, which shared the same sequence as the amplified target DNA except for a 20 bp insertion in the middle by recombi... An easy and reliable method was developed for construction and quantification of competitive templates, which shared the same sequence as the amplified target DNA except for a 20 bp insertion in the middle by recombinant polymerase chain reaction (PCR). Among the advantages of competitive PCR is that any predictable or unpredictable variable that affects amplification has the same effect on both target and competitor species and that the final ratio of amplified products reflects exactly the initial targets. The utilization of a thermostable reverse transcriptase in the RT step was proposed to overcome the problem of the efficiency of target cDNA synthesis. In addition, to obtain reliable measurements, it was recommended to perform four PCR with amounts of competitive template flanking the concentration of the target mRNA. 展开更多
关键词 follicle stimulating hormone receptor MRNA reverse transcription competitive polymerase chain reaction
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Exogenous reference gene normalization for real-time reverse transcription-polymerase chain reaction analysis under dynamic endogenous transcription
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作者 Stephen Johnston Zachary Gallaher Krzysztof Czaja 《Neural Regeneration Research》 SCIE CAS CSCD 2012年第14期1064-1072,共9页
Quantitative real-time reverse transcription-polymerase chain reaction (qPCR) is widely used to investigate transcriptional changes following experimental manipulations to the nervous system. Despite the widespread ... Quantitative real-time reverse transcription-polymerase chain reaction (qPCR) is widely used to investigate transcriptional changes following experimental manipulations to the nervous system. Despite the widespread utilization of qPCR, the interpretation of results is marred by the lack of a suitable reference gene due to the dynamic nature of endogenous transcription. To address this inherent deficiency, we investigated the use of an exogenous spike-in mRNA, luciferase, as an internal reference gene for the 2ct normalization method. To induce dynamic transcription, we systemically administered capsaicin, a neurotoxJn selective for C-type sensory neurons expressing the TRPV-1 receptor, to adult male Sprague-Dawley rats. We later isolated nodose ganglia for qPCR analysis with the reference being either exogenous luciferase mRNA or the commonly used endogenous reference 13-111 tubulin. The exogenous luciferase mRNA reference clearly demonstrated the dynamic expression of the endogenous reference. Furthermore, variability of the endogenous reference would lead to misinterpretation of other genes of interest. In conclusion, traditional reference genes are often unstable under physiologically normal situations, and certainly unstable following the damage to the nervous system. The use of exogenous spike-in reference provides a consistent and easily implemented alternative for the analysis of qPCR data. 展开更多
关键词 exogenous reference gene sensory ganglia reverse transcription-polymerase chain reaction normalization INJURY neural regeneration
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Quantification of mRNA Levels by Fluorescently Labelled Reverse Transcription Competitive PCR
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作者 Wen-ximHuang PingHuang 等 《激光生物学报》 CAS CSCD 2001年第2期140-146,共7页
A reproducible,quantitative,non-radioactive method for the analysis of mRNA expression is described.After RNA preparation and cDNA synthesis,the cDNA was co-amplified with an internal standard in the same PCR system.T... A reproducible,quantitative,non-radioactive method for the analysis of mRNA expression is described.After RNA preparation and cDNA synthesis,the cDNA was co-amplified with an internal standard in the same PCR system.The PCR products containing both targen and internal standard amplificates were electrophoresed and detected on an ABI 377 DNA Sequencer.For each sample,β-actin was also quantified by an identical procedure to compensate for relative differences between samples in the integrity of the individual RNA samples and for variations in reverse transcription.Due to the linear relationship between cDNA content and PCR product ratio of target cDNA template and competitive standard,a single PCR reaction was sufficient for quantification of a sample.The experimental results showed that the method is a mRNA quantitative RT-PCR method with high sensitivity and good reproducibility.It can be used in large-scale accurate quantitative analyses of mRNA expression of any gene. 展开更多
关键词 MRNA 定量测定 荧光标记 RT-PCR
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Detection of hepatocellular carcinoma cells in the peripheral blood with reverse--transcription polymerase chain reaction
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作者 房殿春 刘为纹 +1 位作者 罗元辉 鲁荣 《Journal of Medical Colleges of PLA(China)》 CAS 1998年第2期93-96,共4页
In order to detect circulating cells of hepatocellular carcinoma(HCC) in the peripheral blood with reverse transcripition polymerase chain reaction (RT-PCR ), alpha-fetoprotein (AFP ) mRNA was tested in the blood samp... In order to detect circulating cells of hepatocellular carcinoma(HCC) in the peripheral blood with reverse transcripition polymerase chain reaction (RT-PCR ), alpha-fetoprotein (AFP ) mRNA was tested in the blood samples of 113 cases of HCC and 69 controls (including 30 cases of liver cirrhosis, 9 cases of metastatic liver cancer and 30 normal subjects). 20/43 (46. 5% ) cases of HCC and 2/30 (6. 7% ) cases of liver cirrhosis are positive and the cases of nletastatic liver cancer and normal controls were negative for human AFP(hAFP) rnRNA. The presence of hAFP mRNA in the peripheral blood seems to be correlated with intrahepatic and distant nletastasls of HCC and portal vein thrombosis. It is concluded that the presence of hAFP mRNA in the peripheral hloocl is an indicator of circulating HCC cells and can be used to diagnose the rnetastasisof HCC through henlatogenous route and RT-PCR amplification of hAFP mRNA is a sensitive and specificprocedure for detecting circulating cells of HCC. 展开更多
关键词 hepatocellular carcinoma circulating cells ALPHA-FETOPROTEIN reverse transcription-polymerase chain reaction mRNA
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复合探针实时荧光RT-PCR法检测小儿上呼吸道感染甲型流感病毒的价值 被引量:1
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作者 杨彬彬 陈秋虾 郭丽清 《中国医药指南》 2024年第15期103-105,共3页
目的 分析小儿上呼吸道感染甲型流感病毒应用复合探针实时荧光反转录聚合酶链反应(RT-PCR)法检测的临床价值。方法选择2023年1月至2023年12月流感监测信息系统两家监测点上呼吸道感染甲型流感病毒感染的患儿80例监测标本进行回顾性分析... 目的 分析小儿上呼吸道感染甲型流感病毒应用复合探针实时荧光反转录聚合酶链反应(RT-PCR)法检测的临床价值。方法选择2023年1月至2023年12月流感监测信息系统两家监测点上呼吸道感染甲型流感病毒感染的患儿80例监测标本进行回顾性分析,均开展复合探针实时荧光RT-PCR法检测,分析其诊断价值。结果 根据监测标本最终诊断结果显示,阳性标本68例、阴性标本12例。经复合探针实时荧光RT-PCR法检出67例,检出率为83.75%,敏感度为95.59%、特异度为83.33%、准确度为93.75%、阳性结果预测值为97.01%、阴性结果预测值为76.92%;批间批内变异系数均小于5%。结论 小儿上呼吸道感染甲型流感病毒应用复合探针实时荧光RT-PCR技术具有较高的敏感度、特异度及准确度,且检查结果快速,可为小儿上呼吸道感染甲型流感病变提供可靠的诊断,有利于制订合理的治疗方案。 展开更多
关键词 复合探针 上呼吸道感染 实时荧光反转录聚合酶链反应 甲型流感病毒
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饮食习惯与肥胖患儿性早熟的相关性分析 被引量:2
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作者 连学刚 高兰平 《临床研究》 2024年第1期190-192,共3页
目的探讨饮食习惯与肥胖患儿性早熟的相关性分析。方法选取苏州市吴中人民医院2019年3月至2022年3月期间收治的72例性早熟肥胖患儿作为观察组,另选取同期体检的健康肥胖儿童71例作为常规组。采用实时-逆转录荧光定量聚合酶链反应(RT-qP... 目的探讨饮食习惯与肥胖患儿性早熟的相关性分析。方法选取苏州市吴中人民医院2019年3月至2022年3月期间收治的72例性早熟肥胖患儿作为观察组,另选取同期体检的健康肥胖儿童71例作为常规组。采用实时-逆转录荧光定量聚合酶链反应(RT-qPCR)检测两组外周血miR-125b水平,分析患儿饮食习惯。通过比较两组肥胖儿童的外周血miR-125b、饮食习惯,采用Logistic回归分析法分析外周血miR-125b、饮食习惯与肥胖患儿性早熟的关系。结果观察组外周血miR-125b表达水平高于常规组,差异有统计学意义(P<0.05)。观察组饮食没规律、荤多素少、高添加剂食品占比均高于常规组,差异有统计学意义(P<0.05)。观察组女性患儿、不良饮食习惯占比高于常规组,且经多因素分析显示外周血miR-125b表达水平、女性、不良饮食习惯是肥胖患儿性早熟的独立危险因素,差异有统计学意义(P<0.05)。结论肥胖患儿性早熟外周血miR-125b表达水平高于健康肥胖儿童,不良饮食习惯高于健康肥胖儿童,外周血miR-125b表达水平偏高、不良饮食习惯偏低均为肥胖患儿性早熟的影响因素。 展开更多
关键词 肥胖儿童 不良饮食习惯 微小核糖核酸-125b 实时-逆转录荧光定量聚合酶链反应
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基于蔬菜核酸检测实验的探究性实验教学设计
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作者 刘金钏 严慧玲 +1 位作者 郭新波 向楠 《实验室科学》 2024年第1期58-61,65,共5页
以蔬菜中维生素C积累相关基因的检测为例,探索将操作难度相对较高的RNA相关的核酸检测实验应用于本科实验教学中。实践结果表明,学生们可顺利掌握蔬菜中核糖核酸(RNA)的提取、反转录合成互补DNA(cDNA)、PCR扩增检验目的基因表达等RNA相... 以蔬菜中维生素C积累相关基因的检测为例,探索将操作难度相对较高的RNA相关的核酸检测实验应用于本科实验教学中。实践结果表明,学生们可顺利掌握蔬菜中核糖核酸(RNA)的提取、反转录合成互补DNA(cDNA)、PCR扩增检验目的基因表达等RNA相关的实验操作技能,达到了预期的教学目标。本实验项目的实施促进了学生们对多门学科知识的融会贯通,有助于其提高发现问题和解决问题的能力并形成探索精神和创新思维。这对培养具有创新创业实践能力的复合型人才具有重要的作用。 展开更多
关键词 实验教学 RNA提取 反转录PCR 核酸检测
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不同途径感染禽网状内皮组织增殖病病毒的动态监测
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作者 徐凤霞 孙万里 +3 位作者 张亚文 常爽 王一新 赵鹏 《中国兽医杂志》 CAS 北大核心 2024年第4期11-17,共7页
为明确鸡群经不同途径感染禽网状内皮组织增殖病病毒(REV)的排毒动态,本试验通过设立无特定病原体(SPF)鸡胚6胚龄卵黄囊感染组、1日龄SPF鸡腹腔感染组以及对上述两组SPF鸡分别加入感染鸡的卵黄囊感染同居组和腹腔感染同居组,建立SPF鸡感... 为明确鸡群经不同途径感染禽网状内皮组织增殖病病毒(REV)的排毒动态,本试验通过设立无特定病原体(SPF)鸡胚6胚龄卵黄囊感染组、1日龄SPF鸡腹腔感染组以及对上述两组SPF鸡分别加入感染鸡的卵黄囊感染同居组和腹腔感染同居组,建立SPF鸡感染REV模型,同时设置空白对照组,在不同日龄记录各组鸡的体重和死亡情况,并综合运用反转录PCR(RT-PCR)、实时荧光定量PCR(RT-qPCR)和间接免疫荧光试验(IFA)3种检测方法对各感染组进行REV的动态监测。结果显示:(1)与空白对照组相比,腹腔感染组和卵黄囊感染组SPF鸡体重增长在感染后第21~70天均受到显著抑制(P<0.05),卵黄囊感染组SPF鸡的死亡率在感染后第49和63天显著升高(P<0.05),腹腔感染组SPF鸡的死亡率在感染后第42天显著升高(P<0.05),卵黄囊感染组SPF鸡血浆中REV病毒载量在感染后第21天显著高于腹腔感染组(P<0.05);(2)卵黄囊感染组SPF鸡自出壳即可检测到病毒血症阳性,并在感染后第21天时达到排毒高峰,腹腔感染组SPF鸡在感染后第14天时达到排毒高峰;(3)卵黄囊感染同居组的10只SPF鸡在感染后第7天时即检测到2只鸡呈病毒血症阳性,腹腔感染同居组SPF鸡在感染后第21天时检测到1只鸡呈阳性;(4)3种检测方法中,RT-qPCR和IFA检出REV效果更好。本试验通过分析不同途径感染REV后鸡群血浆中的带毒状态,为REV感染的科学防控和净化提供参考数据。 展开更多
关键词 禽网状内皮组织增殖病病毒(REV) 排毒规律 反转录PCR(RT-PCR) 实时荧光定量PCR(RT-qPCR) 间接免疫荧光试验(IFA)
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帕利亚姆病毒实时荧光定量RT-PCR检测方法的建立与应用
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作者 杨恒 李占鸿 +5 位作者 宋子昂 高林 李卓然 廖德芳 肖雷 李华春 《畜牧兽医学报》 CAS CSCD 北大核心 2024年第1期395-400,共6页
本研究拟建立帕利亚姆病毒(Palyam virus,PALV)血清型特异性实时荧光定量RT-PCR(qRT-PCR)方法用于临床样本或媒介中PALV血清型鉴定。根据我国流行PALV毒株的基因节段2序列,设计扩增引物和TaqMan探针,建立PALV血清型特异型qRT-PCR方法,... 本研究拟建立帕利亚姆病毒(Palyam virus,PALV)血清型特异性实时荧光定量RT-PCR(qRT-PCR)方法用于临床样本或媒介中PALV血清型鉴定。根据我国流行PALV毒株的基因节段2序列,设计扩增引物和TaqMan探针,建立PALV血清型特异型qRT-PCR方法,对方法的特异性、灵敏性与重复性进行评估;以我国分离的28株PALV和90份核酸阳性血液样本评估检测方法的可靠性;利用建立的方法对采集库蠓样本中携带的PALV进行血清型鉴定。结果显示,建立的PALV血清型qRT-PCR检测方法具有良好的特异性与灵敏性,可检出核酸拷贝数下限在22至28 copies·μL^(-1)。对28株PALV的qRT-PCR检测结果与病毒测序鉴定结果一致;对PALV不同感染阶段哨兵动物血液(90份)中的qRT-PCR鉴定结果与分离病毒的血清型鉴定结果一致;建立的方法可准确鉴定库蠓中携带PALV的血清型。本研究建立的PALV血清型qRT-PCR定型方法具有良好的特异强、敏感性与重复性,可用于PALV感染动物与媒介中PALV血清型的鉴定,具有良好的应用价值。 展开更多
关键词 帕利亚姆病毒 血清型鉴定 实时荧光定量RT-PCR 检测方法
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新型冠状病毒亚基因组RNA检测方法的建立及性能评估
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作者 赵祉薇 陈茶 黄彬 《实用医学杂志》 CAS 北大核心 2024年第12期1737-1743,共7页
目的建立检测新型冠状病毒(新冠病毒)亚基因组RNA(subgenomic RNA,sgRNA)的方法,并对所建立的方法进行性能评估。方法根据新型冠状病毒sgRNA序列设计引物和探针,建立检测sgRNA的实时荧光逆转录PCR(reverse transcription polymerase cha... 目的建立检测新型冠状病毒(新冠病毒)亚基因组RNA(subgenomic RNA,sgRNA)的方法,并对所建立的方法进行性能评估。方法根据新型冠状病毒sgRNA序列设计引物和探针,建立检测sgRNA的实时荧光逆转录PCR(reverse transcription polymerase chain reaction,RT-PCR)方法,对所建立的方法进行优化,包括引物、探针的浓度及比例、延伸温度、反应体积和模板量。并对所建立的方法进行性能评估,包括最低检测限、灵敏度、特异性和重复性。对临床样本进行新冠病毒sgRNA和基因组RNA(genomic RNA,gRNA)检测,并对检测结果进行分析。结果建立了检测新冠病毒sgRNA的RT-PCR方法。所建方法的最低检测限为100 copies/mL,对常见病原体的检测结果均为阴性。对高、中、低浓度样本sgRNA进行检测,CV均<5%。115例疑似新冠病毒感染者的咽拭子样本sgRNA为阳性(115/330,阳性率为34.85%)。gRNA-N Ct值<30时,sgRNA-N的阳性率为100.00%;gRNA-N的Ct值介于30~32时,sgRNA-N的阳性率为68.75%;gRNA-N的Ct值介于32~35时,sgRNA-N的阳性率为44.44%;gRNA-N的Ct值>35时,sgRNA-N均为阴性。结论建立了新冠病毒sgRNA的RT-PCR检测方法,方法灵敏、特异、重复性好。 展开更多
关键词 新型冠状病毒 亚基因组RNA 聚合酶链反应 逆转录
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葡萄浆果内坏死病毒RT-q PCR检测技术建立及其在葡萄砧木中的时空分布规律
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作者 张英 原青云 +3 位作者 任芳 胡国君 范旭东 董雅凤 《中国农业科学》 CAS CSCD 北大核心 2024年第14期2771-2780,共10页
【背景】葡萄浆果内坏死病毒(grapevine berry inner necrosis virus,GINV)是近年来在中国报道的一种正单链RNA病毒,该病毒发生普遍且危害严重。高灵敏的检测技术是病毒田间监测和无病毒苗木培育的关键。【目的】建立灵敏度较高的GINV... 【背景】葡萄浆果内坏死病毒(grapevine berry inner necrosis virus,GINV)是近年来在中国报道的一种正单链RNA病毒,该病毒发生普遍且危害严重。高灵敏的检测技术是病毒田间监测和无病毒苗木培育的关键。【目的】建立灵敏度较高的GINV逆转录实时荧光定量PCR(reverse transcription real-time quantitative PCR,RT-qPCR)检测体系;明确不同葡萄砧木对GINV的敏感性;明确GINV在寄主植株中的时空分布规律,为该病毒的监测预警提供技术支撑。【方法】根据GenBank已登录GINV的复制酶(replicase,RP)、移动蛋白(movement protein,MP)和外壳蛋白(coat protein,CP)基因保守序列设计6套引物,通过常规RT-PCR和RT-qPCR筛选特异性强、扩增效果好的引物。再通过对退火温度和引物浓度等反应条件的优化建立GINV的SYBR Green I染料法RT-qPCR检测体系,并进一步对该技术的灵敏度、特异性和田间适用性进行评价。将GINV接种到贝达、SO4、101-14、140R和1103P 5种葡萄砧木上进行症状观察和病毒检测,以筛选GINV敏感性较高的指示植物。基于所建立的RT-qPCR技术对接种GINV葡萄砧木的不同生长时期、不同部位样品进行GINV检测,从而明确GINV在不同葡萄砧木的时空分布规律。【结果】建立了GINV SYBR Green I染料法RT-qPCR检测技术体系,其最佳引物为GINVRPYGF2/R2,最佳引物浓度为300 nmol·L^(-1),最佳退火温度为58.4℃。该技术对GINV的检测特异性强,其检测灵敏度达常规RT-PCR的1 000倍。症状观察结果表明贝达感染GINV的症状最为严重,表现为叶片系统性坏死,而其他砧木叶片仅表现褪绿斑驳和环斑症状。RT-qPCR检测结果表明GINV在EL27时期(坐果期)的相对含量最高,5个品种间的病毒相对含量在EL12(花序分明期)和EL27时期间无显著差异,EL31时期(果实增大期)的贝达与SO4、101-14、140R和1103P的病毒相对含量存在显著差异;GINV的相对含量在不同组织部位存在较大差异,由高到低依次为下部叶片、上部叶片、上部茎秆、下部茎秆、根部。【结论】建立了灵敏度高、特异性强的GINV RT-qPCR检测方法,利用该方法明确了GINV在不同葡萄砧木的时空分布规律。 展开更多
关键词 葡萄浆果内坏死病毒 逆转录实时荧光定量PCR 葡萄砧木 时空分布
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嗜热毛壳菌端粒酶的表达纯化及酶学特性分析
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作者 尹虎 宋泽玉 奚绪光 《西北农业学报》 CAS CSCD 北大核心 2024年第3期532-541,共10页
为进一步探究端粒酶的酶学特性,以嗜热毛壳菌(Chaetomium thermophilum, Thermo)端粒酶为研究对象,通过生物化学、生物信息学等方法得到4种不同长度的Thermo端粒酶蛋白,分别与体外转录得到的Thermo端粒酶RNA进行组装。通过端粒酶体外延... 为进一步探究端粒酶的酶学特性,以嗜热毛壳菌(Chaetomium thermophilum, Thermo)端粒酶为研究对象,通过生物化学、生物信息学等方法得到4种不同长度的Thermo端粒酶蛋白,分别与体外转录得到的Thermo端粒酶RNA进行组装。通过端粒酶体外延伸试验检测组装体的反转录活性,进一步分析影响其反转录活性的各种因素。结果表明,4种不同长度的Thermo端粒酶蛋白重组质粒经大肠杆菌表达系统诱导表达后均可得到相应的Thermo端粒酶蛋白,且纯度均在90%以上;体外孵育试验表明,在10 mmol/L HEPES-KOH(pH 8.0)、1 mmol/L MgCl2、100 mmol/L NaCl、3 mmol/L KCl、体积分数25%Glycerol、10units/μL Rnasin的条件下,端粒酶蛋白与RNA的摩尔浓度比达到1∶1及以上时,两者能有效复合;端粒酶体外延伸试验发现,结构完整的Thermo端粒酶组装体具有很强的反转录活性,可使18nt-DNA引物反复延伸。TEN结构域不完整并未减弱Thermo端粒酶组装体的反转录活性,说明其在反转录过程中未发挥显著作用。T-PK区或TWJ区缺失的组装体均不能使18nt-DNA引物发生延伸,表明RNA结构的完整性是端粒酶发挥反转录功能的必要条件。 展开更多
关键词 Thermo端粒酶 蛋白表达纯化 RNA体外转录 反转录活性
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NoV GⅡ.2亚型RT-RPA-CRISPR/Cas12a检测方法的建立
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作者 樊成 曾昊 +6 位作者 卢星月 康婕 雷兰兰 刘静 郑玉红 钱卫东 王婷 《中国动物检疫》 CAS 2024年第8期90-97,共8页
近年来,一种新的诺如病毒GⅡ.2亚型(norovirus GⅡ.2,NoV GⅡ.2)通过牡蛎等生食海鲜感染人群,引发急性胃肠炎,并在全球广泛传播。为实现NoV感染的现场诊断和快速疫情响应,亟需建立快速便捷的NoV GⅡ.2亚型核酸检测方法。本研究通过设计... 近年来,一种新的诺如病毒GⅡ.2亚型(norovirus GⅡ.2,NoV GⅡ.2)通过牡蛎等生食海鲜感染人群,引发急性胃肠炎,并在全球广泛传播。为实现NoV感染的现场诊断和快速疫情响应,亟需建立快速便捷的NoV GⅡ.2亚型核酸检测方法。本研究通过设计引物、crRNA,经优化反应条件后,建立了NoV GⅡ.2亚型RTRPA-CRISPR/Cas12a检测方法。结果显示:利用引物NoV-GⅡ.2-F1B和NoV-GⅡ.2-R1对NoV GⅡ.2标准RNA进行RT-RPA扩增,结合crRNA1介导的CRISPR/Cas12a报告体系,能在40 min内完成NoV GⅡ.2核酸检测;该方法检测灵敏度为10 copies/μL,且与轮状病毒、腺病毒、星形病毒、人副肠孤病毒、博卡病毒和札如病毒无交叉反应;应用该方法和qRT-PCR法,分别对30份临床模拟样本进行检测,发现总符合率达96.67%。结果表明,本研究建立的NoV GⅡ.2亚型RT-RPA-CRISPR/Cas12a检测方法无需依赖昂贵设备,具有灵敏度高、特异性强、操作便捷快速等特点,为NoV GⅡ.2感染的现场检测和防控提供了新方法。 展开更多
关键词 NoV GⅡ.2亚型 反转录重组酶聚合酶扩增 CRISPR/Cas12a系统 快速检测
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