Bibliometric analysis of soil phosphate solubilizing microorganisms research using VOSviewer

Phosphorus-solubilizing microbes play key roles in improving phosphorus availability and in alleviating phosphorus nutrient limitation in soils. However, we did not have a comprehensive understanding of the overall research progress and development trend of phosphorus solubilizing microorganisms. In this study, we obtain documents from the Web of Science (WOS) core collection between 2002 and 2022, and a comprehensive review of the progress of global research on soil phosphate solubilizing microorganisms was conducted by using the VOSviewer bibliometric analysis tool. The results showed an increasing trend in the number of published articles from 2002 to 2022. India, accounting for 28% of the total number of published articles, became the most productive country. However, Canada was the country with the highest average citation frequency of articles. Chinese Academy of Sciences (CAS) was the greatest contributor with the most publications. Among the published journals, Frontiers in Microbiology, Applied Soil Ecology and Plant and Soil were the top three core journals in this field. Based on the keyword analysis, the assessment of the mechanisms between phosphorus solubilizing microbes and the soil carbon cycles with the different management practices became the new research trend among the scientific communities. These findings would provide an important reference value for future in-depth research on soil phosphate solubilizing microorganisms.

Variations of phyllosphere microorganisms in asymptomatic and tobacco brown spot leaves before and after spraying 12% difenoconazole + fluxapyroxad SC

12%difenoconazole+fluxapyroxad SC(commercial name:Jiangong)was first released by BASF in China in 2016.It has been registered to control many diseases,including pear scab,apple Alternaria leaf spot,tomato early blight,cucumber powdery mildew,etc.This study evaluated the bioactivity of Jiangong against Alternaria alternata and explored variations of phyllosphere microorganisms in both asymptomatic and tobacco brown spot leaves at different persistence periods(0,5,10,and 15 days post-fungicide application)using high-throughput sequencing technology.The results indicated that Jiangong effectively inhibited mycelial growth(average EC_(50) value of 0.51μg/mL),conidia germination(average EC_(50) value of 3.47μg/mL),and the carbon metabolism of A.alternata.Both asymptomatic and symptomatic leaves presented complex microbial communities.Higher fungal diversity was noted in asymptomatic leaves,while higher bacterial diversity was found in symptomatic leaves.After application,the diversity and abundance of microbial community structures in both types of leaves changed over time.Fungal microbiome communities showed greater sensitivity than bacterial groups,with the microbiome communities of asymptomatic leaves being more affected than those of symptomatic leaves.Fungal community diversity decreased for both symptomatic and asymptomatic leaves after 5 days of application,while the diversity of fungal community in symptomatic leaves showed an upward trend after 10 days of application.Meanwhile,bacterial community diversity increased in both symptomatic and asymptomatic leaves after 5 days of application but then declined in asymptomatic leaves after 15 days.The abundance of the dominant function group of phyllosphere bacteria(metabolism,genetic information processing,environmental information processing)was not affected by the application of Jiangong.However,the abundance of the dominant function group of phyllosphere fungi(animal pathogen-endophyte-wood saprotroph,endophyte-plant pathogen,plant pathogen-undefined saprotroph)was significantly affected by the application of Jiangong,and high variation was found in symptomatic leaves than that of asymptomatic leaves.The application of Jiangong-induced alterations in the community structure of the tobacco phyllosphere microbiome provides a basis for future tobacco brown spot control strategies based on phyllospheric microecology.

Removal of Nitrogen, Phosphorus, and Organic Pollutants From Water Using Seeding Type Immobilized Microorganisms

Objective To study the possibility of removing nitrogen, phosphorus, and organic pollutants using seeding type immobilized microorganisms. Methods Lakes P and M in Wuhan were chosen as the objects to study the removal of nitrogen, phosphorus, and organic pollutants with the seeding type immobilized microorganisms. Correlations between the quantity of heterotrophic bacteria and the total nitrogen （TN）, total phosphorus （TP）, and total organic carbon （TOC） in the two lakes were studied. The dominant bacteria were detected, inoculated to the sludge and acclimated by increasing nitrogen, phosphorus and decreasing carbon source in an intermittent, time-controlled and fixed-quantity way. The bacteria were then used to prepare the seeding type immobilized microorganisms, selecting diatomite as the adsorbent cartier. The ability and influence factors of removing nitrogen, phosphorus, and organic pollutant from water samples by the seeding type immobilized microorganisms were studied. Results The coefficients of the heterotrophic bacterial quantity correlated with TOC, TP, and TN were 0.9143, 0.8229, 0.7954 in Lake P and 0.9168, 0.7187, 0.6022 in Lake M. Ten strains of dominant heterotrophic bacteria belonging to Pseudomonas, Coccus, Aeromonas, Bacillus, and Enterobateriaceae, separately, were isolated. The appropriate conditions for the seeding type immobilized microorgansims in purifying the water sample were exposure time=24 h, pH=7.0-8.0, and quantity of the immobilized microorganisms=0.75-1g/50 mL. The removal rates of TOC, TP, and TN under the above conditions were 80.2%, 81.6%, and 86.8%, respectively. Conclusion The amount of heterotrophic bacteria in the two lakes was correlated with TOC, TP, and TN. These bacteria could be acclimatized and prepared for the immobilized microorganisms which could effectively remove nitrogen, phosphorus, and mixed organic pollutants in the water sample.

Diversity of Phosphate-Dissolving Microorganisms in Corn Rhizosphere

Rhizosphere and nonrhizopshere soils were sampled during corn growth. Total, inorganic phosphate-dissolving and lecithin-mineralizing bacteria, fungi and actinomyctes were determined by plate counting method. Generally, the rhizosphere soil contained around 5 to 100 times more of these bacteria and fungi than the non-rhizosphere soil. However, the actinomycetes in the rhizosphere soil were significantly lower than those in the non-rhizosphere soil. The numbers of these microorganisms didn't significantly change during corn growth in the soils. However, the proportion of the phosphate-dissolving microorganisms in the total changed markedly during corn growth. Generally there were much higher percentages of phosphate-dissolving bacteria and phosphate-dissolving fungi in the rhizosphere soil than the nonrhizosphere soil. More than 90% of the fungi in rhizosphere dissolved inorganic phosphate at the seedling period, but this proportion declined to 20% at the harvesting time. The community of phosphate-dissolving microorganisms also changed during corn growth. Bacillus was dominant in the nonrhizosphere soil. However, in the rhizosphere, Pseudomonas and Enterobacter became predominant. Penicillium and Streptomyces were the main fungi and actinomycetes capable of dissolving phosphate.

Influences of Oyster Shell Soil Conditioner on Soil and Plant Rhizospheric Microorganisms

Oyster shell soil conditioner had significant influence on soil and rhizospheric microorganisms in their biomass,respiratory intensity and nutritional requirement. It could stimulate growth of soil and rhizospheric microorganisms, especially nitrogen-fixers, and intensify soil respiration in proportion to the dose and fertilizing time of the conditioner, leading to the increase in the number of nitrogen fixing bacteria and the decrease in the number of bacteria with special nutrition demands.

Optimization of the in-situ growth conditions based on a novel photo-microcalorimeter for the sustainable cultivation of photosynthetic microorganisms

Despite the great potential of photosynthetic microbes in the production of renewable fuels,value-adding chemicals,and water treatment,etc.,commercial utilization of them is significantly hindered by the lack of techniques to accurately monitor the thermodynamic and kinetic characteristics of the in-situ growth of microbes under controlled light illumination for optimal cultivation.Herein,we demonstrated that a newly developed highly sensitive photo-microcalorimetric system successfully captured the impacts of the light wavelength and strength on the thermodynamic and kinetic parameters of the in-situ growth of Rhodopseudomonas palustris,a representative photosynthetic microorganism.To our best knowledge,this is the first time that highly precise microcalorimetry is employed to monitor exam the in-situ growth of photosynthetic microorganisms under controllable photo illumination.We envision this technique can help for the optimization of the growth conditions of photosynthetic microorganisms for scale-up applications.

Relation between Mesophilic and Psychrotrophic Aerobic Sporulating Microorganisms in Milk

The occurrence and the detection system of mesophilic and psychrotrophic aerobic sporulating microorganisms （MPAS） in raw cow＇s milk were studied. Samples of raw cow＇s bulk tank milk were taken 21 times in 14 farms during one year. Basis of the method for MPAS assessment is the milk sample inactivation at the temperature 80-82 ℃ for 30 minutes followed by incubation in cultivation dishes at 30 -4- 1 ℃ for 3 days-mesophilic aerobic sporulates （MAS）, and at 6.5 .4- 1 ℃ for 10 days-psychrotrophic aerobic sporulates （PAS）. The total count of MPAS was within the span 2.5-340 CFU/mL （colony forming units）. Average plate count of MPAS was 59.4 CFU/mL with variation coefficient 93.1%. MPAS count found in the same dishes at incubation for mesophilic and subsequently strictly psychrophilic microorganisms （MAS ＋ SPAS） which enables to exclude overestimation of results by sporulates able to grow at both incubation temperatures was on average 56.9 CFU/mL what represents 95.8% out of the number of sums of individual dishes at two temperatures （MAS ＋ PAS）. Correlation coefficient of these two types of results r = 0.99 gives evidence of close dependence that is expressed by linear regression equation y = 0.9773x. We can consider the method using at first 30 .4- 1 ℃ and subsequently 6.5 -4-1℃ （MAS ＋ SPAS） as more correct than the method with the opposite order of cultivation temperatures because of better regression coefficient of linear dependence and higher correlation coefficient in relation to the sum of independent incubations （MAS ＋ PAS）.

Effects of Cr^(6+) Stress Culture on Rhizosphere Microorganism of Aquatic Plants

Using traditional microbiological culture method,under laboratory conditions,different concentrations of Cr6＋ were selected for stress culture on Pistia stratiote,Sagittaria sagittifolia and Myriophyllum spicatum.Through determination of the rhizosphere microorganism and the nitrogen cycle bacteria change of three kinds of aquatic macrophytes,the tolerance of rhizosphere microorganism to Cr6＋ was studied.The results showed that the sensitivity of microorganisms could be summarized as：actinomycete bacteria fungi,it has no obvious regularity about tolerance of 3 microorganisms;while the effects demonstrated their specificity on ammonification bacteria,nitrifying bacteria,nitrosococcus bacteria and denitrifying bacteria.

Influence of rotation system on siderophere-producing microorganism(SPM) in rhizosphere soil of southern China

Soil siderophores are important for crop growth,benefit ferric iron absorption of root,and are affected by cropping patterns.The objective of this study was to evaluate the quantity of siderophores in soil of 2 continuous crop rotation patterns over 30 years in Anren country,China.Quantity and siderophore-producing capability of microorganisms in rice-riceoilseed rape(DDY)rotation and rice-rice(DD)rontinuous cropping rhizosphere soil were tested and analyzed by chrome azurol S method.Isolated strains were used to identify siderophore-producing microorganism(SPM)by PCR amplification and DNA sequencing.Results showed that 9 siderophore-producing bacteria strains were isolated from DDY rhizosphere soil while 7 strains were identified from DD rhizosphere soil.The mean solubility index which representing siderophore-producing capability of strains was 3.05.PCR amplification results indicated that bacterial were the major SPM in soil.This research indicates that crop rotation systems could drive microorganisms to produce siderophores and enrich them in bacterial communities.

Ecological effects of crude oil residues on the functional diversity of soil microorganisms in three weed rhizospheres

Ecological effects of crude oil residues on weed rhizospheres are still vague. The quantitative and diversity changes and metabolic responses of soil-bacterial communities in common dandelion （Taraxacum officinale）, jerusalem artichoke （Silphiurn perfoliatum L.） and evening primrose （A colypha australis L.） rhizospheric soils were thus examined using the method of carbon source utilization. The results indicated that there were various toxic effects of crude oil residues on the growth and reproduction of soil bacteria, but the weed rhizospheres could mitigate the toxic effects. Total heterotrophic counting colony-forming units （CFUs） in the rhizospheric soils were significantly higher than those in the non-rhizospheric soils. The culturable soil-bacterial CFUs in the jerusalem artichoke （S. perfoliatum） rhizosphere polluted with 0.50 kg/pot of crude oil residues were almost twice as much as those with 0.25 kg/pot and without the addition of crude oil residues. The addition of crude oil residues increased the difference in substrate evenness, substrate richness, and substrate diversity between non-rhizospheric and rhizospheric soils of T. officinale and A. australis, but there was no significant （p〉0.05） difference in the Shannon＇s diversity index between non-rhizospheric and rhizospheric soils of S. perfoliatum. The rhizospheric response of weed species to crude oil residues suggested that S. perfoliatum may be a potential weed species for the effective plant-microorganism bioremediation of contaminated soils by crude oil residues.

Removal of copper from molybdenite concentrate by mesophilic and extreme thermophilic microorganisms

Mixed mesophilic and extreme thermophilic bioleaching were evaluated to remove copper from the molybdenite concentrate.Bioleaching tests were carried out in shake flasks and in a 50-L bioreactor.The shake flask tests were performed with different inoculum size,solids density,pH.and temperature in order to identify optimum conditions.The highest amount of copper elimination,75%was obtained with extreme thermophilic microorganisms(at 12%inoculation,10%solids,65℃and a pH of 1.5).The highest copper elimination by mesophilic microorganisms was 55%(at 12%inoculation,5%solids,30℃at pH 2).The optimum conditions in shake flask tests were applied to 7 days batch tests in a50-L bioreactor.Extreme thermophilic experiment gave the best copper elimination of 60%(at 12%inoculation,10%solids,65℃and pH 1.5).Mesophilic test removed 50%of the copper(at 12%inoculation,10%solids,35℃at pH 2).

Siderophores from Marine Microorganisms and Their Applications

In view of the fact that siderophores from microorganisms in different environments have received much attention in recent years because of their potential applications and diverse physiological functions, this review deals with side rophore producing marine microorganisms and the detection, chemical structure and potential applications of siderophores.

Mineralization of a Proterozoic Sulfide Black Smoker Chimney and Thermophilous Microorganisms in Eastern Hebei,China

A sulfide black smoker chimney exists in the Gaobanhe seabed exhalation massive sulfide deposit in the Xingiong-Kuancheng secondary fault basin of the Proterozoic Yaniiao rift trough in Hebei Province, taking the shape of mounds, individually about 2-3 cm high. Abundant fossils of thermophilous bacteria and algae in perfect preservation are found in the ore surrounding the black smoker chimney. Scanning electron microscopy （SEM） and molecular biomarker studies on the microorganismai ore fabric show that the microorganism in the sulfide ore is in fact a sedimentary product of probiotic bacteria and algae. In the special food chain based on black smoker chimney at ancient seabed- thermophilous bacteria, the thermophilous bacteria and algae reproduce in large quantity. Intermittently erupting of fluid from the chimney creats conditions for formation of sulfide deposit. In the process of exhalation action of hot fluid, thermophilous bacteria and algae grow and reproduce around the sulfide black smoker chimney, absorbing mineralizing substances brought by the fluid. Massive sulfide deposits are formed in this process of absorption of seabed black smoker chimney exhalation-mineralizing fluid pulsation-thermophilous microorganism.

Comparisons of extraction and purification methods of soil microorganism DNA from rhizosphere soil

Microorganism DNA of rhizosphere soil from Pinus koraiensis and Pinus sylvestriformis were extracted by proteinase K based on SDS method, CTAB method, PVP （polyvinylpolypyrrolidone） method, and freezing and thawing method and the crude DNA from rhizosphere soil were purified by dialysis method, silver beads absorption method, and squeezing DNA gel method. The results of different extracting and purifying methods were compared and evaluated. Results indicated that the best method of extraction for microorganism DNA in rhizosphere soil was proteinse K based on SDS method with high salt concentration of 1.0% （w/v） NaCl, which could effectively eliminate humic acids and other impurities. The dialysis method was suitable to purify DNA from rhizosphere soil because of effectively removing brown matters and humic acids and the purified products were suited to PCR amplification. Squeezing DNA gel method was also a good purification method with the advantage of inexpensive in cost and efficient in use.

Compositional Shifts in Ammonia-Oxidizing Microorganism Communities of Eight Geographically Different Paddy Soils —Biogeographical Distribution of Ammonia-Oxidizing Microorganisms

Soil nitrification is mediated by ammonia-oxidizing archaea (AOA) and bacteria (AOB), which occupy different specialized ecological niches. However, little is known about the diversification of AOA and AOB communities in a large geographical scale. Here, eight paddy soils collected from different geographic regions in China were selected to investigate the spatial distribution of AOA and AOB, and their potential nitrification activity (PNA). The result showed that the abundance of AOA was predominant over AOB, indicating that the rice fields favor the growth of AOA. PNA highly varied from 0.43 to 3.57 μg NOX-N·g·dry·soil·h-1, and was positively related with soil NH3 content, the abundance of AOA community, and negatively related with the diversity of AOB community (P amoA genes revealed remarkable differences in the compositions of AOA and AOB community. Phylogenetic analyses of amoA genes showed that Nitrosospiracluster-3-like and Nitrosomonas cluster 7-like AOB extensively dominated the AOB communities, and 54d9-like AOA within the soil group 1.1b predominated in AOA communities in paddy soils. Redundancy analysis suggested that the spatial variations of AOA community structure were influenced by soil TN content (P < 0.01), while no significant correlation between AOB community structure and soil properties was found. Findings highlight that ammonia oxidizers exhibit spatial variations in complex paddy fields due to the joint influence of soil variables associated with N availability.

Bioleaching of chalcopyrite by mixed culture of moderately thermophilic microorganisms

A mixed culture of moderately thermophilic microorganisms was enriched from acid mine drainages(AMDs)samples collected from several sulphide mines in China,and the bioleaching of chalcopyrite was conducted both in shake flask and bioreactor.The results show that in the shake flask,the mixture can tolerate 50 g/L chalcopyrite after being acclimated to gradually increased concentrations of chalcopyrite.The copper extraction increases obviously in bioleaching of chalcopyrite with moderately thermophilic microorganisms supplemented with 0.4 g/L yeast extract at 180 r/min,74% copper can be extracted in the pulp of 50 g/L chalcopyrite after 20 d.Compared with copper extractions of mesophilic culture,unacclimated culture and acclimated culture without addition of yeast extract,that of accliniated culture with addition of yeast extract is increased by 53%,44% and 16%,respectively.In a completely stirred tank reactor,the mass fraction of copper and total iron extraction reach up to 81% and 56%,respectively.The results also indicate that it is necessary to add a large amount of acid to the pulp to extract copper from chalcopyrite effectively.

Bio-dissolution of Cu,Mo and Re from molybdenite concentrate using mix mesophilic microorganism in shake flask

The application of the response surface methodology and the central composite design（CCD） technique for modeling and optimization of the influence of some operating variables on copper,molybdenum and rhenium recoveries in a bioleaching process was investigated.Three main bioleaching parameters,namely pH,solid concentration and inoculum percent,were changed during the bioleaching tests based on CCD.The ranges of the bioleaching process variables used in the design were as follows：pH1.46-2.14,solid concentration 0.95%-11.05%,and inoculum percent 1.59%-18.41%.A total of 20 bioleaching tests were carried out by the CCD method according to software-based designed matrix.Empirical model equations were developed according to the copper,molybdenum and rhenium recoveries obtained with these three parameters.Model equations of responses at the base of parameters were achieved by using statistical software.The model equations were then individually optimized by using quadratic programming to maximize copper,molybdenum and rhenium recoveries individually within the experimental range.The optimum conditions for copper recovery were pH 1.68,solid concentration 0.95% and the inoculum 18.41%（v/v）,while molybdenum and rhenium recoveries were 2.18% and 24.41%,respectively.The predicted values for copper,molybdenum and rhenium recoveries were found to be in good agreement with the experimental values.Also jarosite formation during bioleaching tests was also investigated.

Antimicrobial effects of silver zeolite,silver zirconium phosphate silicate and silver zirconium phosphate against oral microorganisms

Objective:To evaluate the antimicrobial activities of silver inorganic materials,including silver zeolite(AgZ),silver zirconium phosphate silicate(AgZrPSi)and silver zirconium phosphate(AgZrp),against oral microorganisms.In line with this objective,the morphology and structure of each type of silver based powders were also investigated.Methods:The antimicrobial activities of AgZ,AgZrPSi and AgZrP were tested against Streptococcus mutans,Lactobacillus casei,Candida albicans and Staphylococcus aureus using disk diffusion assay as a screening test.The minimum inhibitory concentration(MIC)and minimum lethal concentration(MLC)were determined using the modified membrane method.Scanning electron microscope and X-ray diffraction were used to investigate the morphology and structure of these silver materials.Results:All forms of silver inorganic materials could inhibit the growth of all test microorganisms.The MIC of AgZ,AgZrPSi and AgZrP was 10.0 g/L whereas MLC ranged between 10.0-60.0 g/L.In terms of morphology and structure.AgZrPSi and AgZrP had smaller sized particles(1.5-3.0μm)and more uniformly shaped than AgZ.Conclusions:Silver inorganic materials in the form of AgZ,AgZrPSi and AgZrP had antimicrobial effects against all test oral microorganisms and those activities may be influenced by the crystal structure of carriers.These results suggest that these silver materials may be useful metals applied to oral hygiene products to provide antimicrobial activity against oral infection.

Assessment of Rhizospheric Microorganisms of Transgenic Populus tomentosa with Cowpea Trypsin Inhibitor (CpTI) Gene

To have a preliminary insight into biosafety of genetically transformed hybrid triploid poplars （Populus tomentosa × P bolleana）× P. tomentosa with the cowpea trypsin inhibitor （CpTD gene, two layers of rhizospheric soil （from 0 to 20cm deep and from 20 to 40cm deep, respectively） were collected for microorganism culture, counting assay and PCR analysis to assess the potential impact of transgenic poplars on non-target microorganism population and transgene dispersal. When the same soil layer of suspension stock solution was diluted at both 1：1000 and 1：10000 rates, there were no significant differences in bacterium colony numbers between the inoculation plates of both transgenic and non-transgenic poplars. The uniform results were revealed for both soil layer suspension solutions of identical poplars at both dilution rates except for non-transgenic poplars at 1：10000 dilution rates from the same type of soil. No significant variation in morphology of both Gram-positive and Gram-negative bacteria was observed under the microscope. The potential transgene dispersal from root exudates or fallen leaves to non-target microbes was repudiated by PCR analysis, in which no CpTI gene specific DNA band was amplified for 15 sites of transgenic rhizospheric soil samples. It can be concluded that transgenic poplar with the CpTI gene has no severe impact on rhizospheric microorganisms and is tentatively safe to surrounding soil micro-ecosystem.

Quantitative characteristics of microorganisms in permafrost at different depths and their relation to soil physicochemical properties

Microorganisms in permafrost can live in cold environments due to coadapted physicochemical processes in this environment. In this paper, the relation between microbial number and soil physicochemical properties at the headwaters area of the Urumqi River is analyzed by using fluorescence microscopy counting and oligo-culture techniques. In total, 20 samples from a 200-cm permafrost core were used as study materials. The study reveals that the number of culturable bacteria has a significantly positive correlation with soil water content, total carbon and total nitrogen concentrations, and a significantly negative correlation with soil pH value. In addition, the ratio of culturable bacteria to total cell number decreases with depths. The results demonstrate that the number of culturable bacteria in permafrost is closely correlated with soil physicochemical properties and depositional age.