Phylogenetic patterns of shrub communities along the longitudinal and latitudinal gradients on the northeastern Qinghai–Tibetan Plateau

Biodiversity distribution patterns are a basic and long-standing but crucial aspect of ecology research.These patterns form the primary source of data used to develop biodiversity protection practices,especially in mountain ecosystems.Shrubs comprise one of the main types of vegetation on the Qinghai–Tibetan Plateau,where they serve vital ecological functions.In this study,we used a community phylogenetic approach to examine the distribution patterns of shrub communities along the longitudinal and latitudinal gradients on the northeastern Qinghai–Tibetan Plateau.We observed significant latitudinal trends in both the phylogenetic diversity(PD)and net relatedness index(NRI)values of shrub communities,such that the former decreased and the latter increased with increasing latitude.However,no significant PD,NRI and nearest taxon index(NTI)distribution patterns were observed along a longitudinal gradient.A further analysis revealed that the combination of temperature-related and precipitation-related climate variables most strongly affected the PD,NRI and NTI values of shrub communities,indicating that the latitudinal patterns in the PD,NRI and NTI of a shrub community may be determined mainly by interactions with these climate factors.

Multi-scale phylogenetic structure in coastal dune plant communities across the globe

Aims Studies integrating phylogenetic history and large-scale community assembly are few,and many questions remain unanswered.Here,we use a global coastal dune plant data set to uncover the important factors in community assembly across scales from the local filtering processes to the global long-term diversification and dispersal dynamics.Coastal dune plant communities occur worldwide under a wide range of climatic and geologic conditions as well as in all biogeographic regions.However,global patterns in the phylogenetic composition of coastal dune plant communities have not previously been studied.Methods The data set comprised vegetation data from 18463 plots in New Zealand,South Africa,South America,North America and Europe.The phylogenetic tree comprised 2241 plant species from 149 families.We calculated phylogenetic clustering(Net Relatedness Index,NRI,and Nearest Taxon Index,NTI)of regional dune floras to estimate the amount of in situ diversification relative to the global dune species pool and evaluated the relative importance of land and climate barriers for these diversification patterns by geographic analyses of phylogenetic similarity.We then tested whether dune plant communities exhibit similar patterns of phylogenetic structure within regions.Finally,we calculated NRI for local communities relative to the regional species pool and tested for an association with functional traits(plant height and seed mass)thought to vary along sea–inland gradients.Important Findings Regional species pools were phylogenetically clustered relative to the global pool,indicating regional diversification.NTI showed stronger clustering than NRI pointing to the importance of especially recent diversifications within regions.The species pools grouped phylogenetically into two clusters on either side of the tropics suggesting greater dispersal rates within hemispheres than between hemispheres.Local NRI plot values confirmed that most communities were also phylogenetically clustered within regions.NRI values decreased with increasing plant height and seed mass,indicating greater phylogenetic clustering in communities with short maximum height and good dispersers prone to wind and tidal disturbance as well as salt spray,consistent with environmental filtering along sea–inland gradients.Height and seed mass both showed significant phylogenetic signal,and NRI tended to correlate negatively with both at the plot level.Low NRI plots tended to represent coastal scrub and forest,whereas high NRI plots tended to represent herb-dominated vegetation.We conclude that regional diversification processes play a role in dune plant community assembly,with convergence in local phylogenetic community structure and local variation in community structure probably reflecting consistent coastal-inland gradients.Our study contributes to a better understanding of the globally distributed dynamic coastal ecosystems and the structuring factors working on dune plant communities across spatial scales and regions.

Habitat specialization and phylogenetic structure of tree species in a coastal Brazilian white-sand forest

Aims The coastal Brazilian rainforest on white-sand(restinga)ranks among the most fragmented forest types in the tropics,owing to both the patchy distribution of sandy soils and widespread coastal development activities.Here we study the environmental and evolutionary determinants of a forest tree assemblage at a single restinga forest in Southeastern Brazil.We also explore the ability of competing hypotheses to explain the maintenance of species diversity in this forest type,which includes contrasting extremes of edaphic conditions associated with flooding stress.Methods The study was conducted in a white-sand forest permanent plot of 10.24 ha on the coastal plain of Southeastern Brazil.This plot was divided into 256 quadrats of 20×20 m,which were classified into two main edaphic habitats(flooded and drained).Trees with a diameter≥1 cm at breast height were identified.We assembled DNA sequence data for each of the 116 morphospecies recognized using two chloroplast markers(rbcL and matK).A phylogenetic tree was obtained using the maximum likelihood method,and a phylogenetic distance matrix was produced from an ultrametric tree.We analyzed similarity in floristic composition and structure between habitats and related them to cross-plot distances using permutation procedures.Null model torus shift simulations were performed to obtain a statistical significance level for habitat association for each species.The phylogenetic structure for the two habitats and for each 20×20 m quadrat was calculated using the mean phylogenetic distance weighted by species abundance and checked for significance using the standardized effect size generated by 5000 randomizations of phylogenetic tip labels.Important Findings Our results indicate that partitioning among edaphic habitats is important for explaining species distributions and coexistence in restinga forests.Species distributions within the plot were found to be non-random:there was greater floristic similarity within than between habitats,and>40%of the more abundant species were positively or negatively associated with at least one habitat.Patterns of habitat association were not independent of phylogenetic relatedness:the community was overdispersed with respect to space and habitat type.Closely related species tended to occur in different habitats,while neighboring trees tended to belong to more distantly related species.We conclude that habitat specialization is important for the coexistence of species in restinga forests and that habitat heterogeneity is therefore an essential factor in explaining the maintenance of diversity of this unique but fragile and threatened type of forest.

Diversity patterns of cushion plants on the Qinghai-Tibet Plateau:A basic study for future conservation efforts on alpine ecosystems

The Qinghai-Tibet Plateau(QTP)is an important cushion plant hotspot.However,the distribution of cushion plants on the QTP is unknown,as are the factors that drive cushion plant distribution,limiting our understanding of the evolution of cushion species in the region.In this study,we assessed spatial patterns of total cushion plant diversity(including taxonomic and phylogenetic)over the entire QTP and compared patterns of diversity of cushion plants with different typologies(i.e.,compact vs.loose).We also examined how these patterns were related to climatic features.Our results indicate that the southern QTP hosts the highest total cushion plant richness,especially in the south-central Hengduan Mountains subregion.The total number of cushion species declines from south to north and from southeast to northwest.Compact cushion plants exhibit similar patterns as the total cushion plant richness,whereas loose cushion plants show random distribution.Cushion plant phylogenetic diversity showed a similar pattern as that of the total cushion plant richness.In addition,cushion plant phylogenetic community structure was clustered in the eastern and southwestern QTP,whereas random or overdispersed in other areas.Climatic features represented by annual energy and water trends,seasonality and extreme environmental factors,had significant effects on cushion plant diversity patterns but limited effects on the phylogenetic community structure,suggesting that climatic features indeed promote the formation of cushion plants.Because cushion plants play vital roles in alpine ecosystems,our findings not only promote our understanding of the evolution and formation of alpine cushion plant diversity but also provide an indispensable foundation for future studies on cushion plant functions and thus alpine ecosystem sustainability in the entire QTP region.

Species turnover drives grassland community to phylogenetic clustering over long-term grazing disturbance

Aims Grazing exerts profound effects on grassland ecosystem service and functions by regulating species composition and diversity,and structuring community assembly worldwide.However,adaptions of phylogenetic diversity and phylogenetic community structure to long-term grazing disturbance remain poorly studied,especially for ecosystems distributed in extreme environments.Methods Here,we conducted an experiment with multigrazing intensities to explore the impacts of grazing disturbance on plant phylogenetic diversity and community structure in an alpine grassland of the Tibetan Plateau.Important Findings Grazing disturbance enriched plant species richness(SR),and stimulated species turnover from regional species pool,consequently changing community species composition.Under low intensities,grazing exerted no obvious effects on phylogenetic diversity and community structure,whereas communities changed from overdispersion to clustering under high grazing intensity.High grazing intensity resulted in stronger environmental filtering,which consequently selected those species with high resilience to grazing disturbance.The observed clustering structure was associated with the colonizing species which were closely related to resident species,and locally extinct species,and distantly related to residents.At the plant functional trait level,high grazing intensity increased species colonization largely by altering the effect of root depth on species colonization compared to light grazing.Our results highlight that solely utilization of SR and diversity cannot fully represent grassland communities responses to grazing.The effects of species turnover on community phylogenetic diversity and structure are entailed to be explored in the future grazing studies.

Point process models, the dimensions of biodiversity and the importance of small-scale biotic interactions

Aims Recent mechanistic explanations for community assembly focus on the debates surrounding niche-based deterministic and dispersalbased stochastic models.This body of work has emphasized the importance of both habitat filtering and dispersal limitation,and many of these works have utilized the assumption of species spatial independence to simplify the complexity of the spatial modeling in natural communities when given dispersal limitation and/or habitat filtering.One potential drawback of this simplification is that it does not consider species interactions and how they may influence the spatial distribution of species,phylogenetic and functional diversity.Here,we assess the validity of the assumption of species spatial independence using data from a subtropical forest plot in southeastern China.Methods We use the four most commonly employed spatial statistical models—the homogeneous Poisson process representing pure random effect,the heterogeneous Poisson process for the effect of habitat heterogeneity,the homogenous Thomas process for sole dispersal limitation and the heterogeneous Thomas process for joint effect of habitat heterogeneity and dispersal limitation—to investigate the contribution of different mechanisms in shaping the species,phylogenetic and functional structures of communities.Important Findings Our evidence from species,phylogenetic and functional diversity demonstrates that the habitat filtering and/or dispersal-based models perform well and the assumption of species spatial independence is relatively valid at larger scales(50×50 m).Conversely,at local scales(10×10 and 20×20 m),the models often fail to predict the species,phylogenetic and functional diversity,suggesting that the assumption of species spatial independence is invalid and that biotic interactions are increasingly important at these spatial scales.