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Testing Hypotheses of Pleistocene Population History Using Coalescent Simulations: Refugial Isolation and Secondary Contact in Pseudepidalea raddei (Amphibia: Bufonidae)
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作者 Bingjun DONG Jing CHE +4 位作者 Li DING Song HUANG Robert W.MURPHY Ermi ZHAO Yaping ZHANG 《Asian Herpetological Research》 SCIE 2012年第2期103-113,共11页
The impact of the Quaternary glaciation on eastern China’s local fauna and flora is a topic of considerable interest. We use mitochondrial DNA(mtDNA) sequences and coalescent simulations to test two general biogeogra... The impact of the Quaternary glaciation on eastern China’s local fauna and flora is a topic of considerable interest. We use mitochondrial DNA(mtDNA) sequences and coalescent simulations to test two general biogeographic hypotheses related to the effect of the Pleistocene climatic fluctuations on a widespread, eastern Chinese amphibian, Pseudepidalea raddei. Genealogical reconstructions are made and they detect major western and eastern lineages, which overlap in northwestern China, and possibly indicate the secondary contact of the populations that had entered the region from separate glacial refugia. Coalescent tests rejected alternative hypotheses of fragmentation of either a widespread ancestor or panmixia. The tests instead supported the hypothesis of geographic isolation and a remarkable dispersal pattern in one of the lineages. Though the Pleistocene climatic events are known to have affected the historical distributions and intra-specific divergence of Chinese squamates, coalescent and non-coalescent demographic analyses indicated that the toad P. raddei was not adversely affected by glacial cycling. Presumably, an increase in the amount of climatically mild habitats in East Asia is due to the development of monsoons since the Mid-late Pleistocene is responsible for the relatively mild effects. 展开更多
关键词 Mongolian toad Pleistocene refugia PHYLOGEOGRAPHY BIOGEOGRAPHY
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Glacial Refugia of Ginkgo biloba and Human Impact on Its Genetic Diversity:Evidence from Chloroplast DNA 被引量:6
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作者 Wei Gong Zhen Zeng Ye-Ye Chen Chuan Chen Ying-Xiong Qiu Cheng-Xin Fu 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2008年第3期368-374,共7页
Variations in the trnK region of chloroplast DNA were investigated in the present study using polymerase chain reactionrestriction fragment length polymorphism to detect the genetic structure and to infer the possible... Variations in the trnK region of chloroplast DNA were investigated in the present study using polymerase chain reactionrestriction fragment length polymorphism to detect the genetic structure and to infer the possible glacial refugia of Ginkgo biloba L. in China. In total, 220 individuals from 12 populations in China and three populations outside China were analyzed, representing the largest number of populations studied by molecular markers to date. Nineteen haplotypes were produced and haplotype A was found in all populations. Populations in south-western China, including WC, JF, PX, and SP, contained 14 of the 19 haplotypes and their genetic diversity ranged from 0.771 4 to 0.867 6. The TM population from China also showed a high genetic diversity (H = 0.848 5). Most of the genetic variation existed within populations and the differentiation among populations was low (GsT = 0.2). According to haplotype distribution and the historical record, we suggest that populations of G. biloba have been subjected to extensive human impact, which has compounded our attempt to infer glacial refugia for Ginkgo. Nevertheless, the present results suggest that the center of genetic diversity of Ginkgo is mainly in south-western China and in situ conservation is needed to protect and preserve the genetic resources. 展开更多
关键词 chloroplast DNA Ginkgo biloba glacial refugia human activities polymerase chain reaction-restriction fragment length polymorphism
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中国野生半夏的遗传多样性和遗传结构研究
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作者 吴敏 吴诗琪 +2 位作者 潘凤 石甜 赵财 《广西植物》 CAS CSCD 北大核心 2024年第4期766-776,共11页
第四纪气候波动以及地理和环境隔离深刻地影响了现代植物的遗传多样性、遗传结构和地理分布格局。该研究采用分子谱系地理学的研究方法对药用植物半夏19个居群共212个个体的3个叶绿体片段psb K-psb I、atp F-atp H和trn L-F进行分析,探... 第四纪气候波动以及地理和环境隔离深刻地影响了现代植物的遗传多样性、遗传结构和地理分布格局。该研究采用分子谱系地理学的研究方法对药用植物半夏19个居群共212个个体的3个叶绿体片段psb K-psb I、atp F-atp H和trn L-F进行分析,探究半夏的遗传多样性、遗传结构、地理分布格局模式及成因,并探讨其居群历史动态。结果表明:(1)半夏总单倍型多样性H d为0.882,总核苷酸多样性π为1.23×10-3,在物种水平上表现出较高的遗传多样性。(2)分子方差分析(AMOVA)结果显示,半夏遗传变异主要发生在居群间,显著的遗传分化(F ST=0.909,P<0.001)和较低的种群内遗传多样性(H S=0.134);种群间遗传分化系数N ST=0.913>G ST=0.855(0.01<P<0.05),表明叶绿体单倍型具有明显的谱系地理结构。(3)中性检验结果显示,Tajima s D值、Fu and Li s D值以及Fu and Li s F值均为不显著正值,Fu s Fs值为不显著负值且失配分析曲线呈双峰,表明半夏居群整体没有经历过扩张事件。(4)单倍型地理分布显示,西南地区和中-东部地区具有单倍型多样性较高,并存在特有单倍型,故推测第四纪冰期时在这两个区域存在冰期避难所。总之,通过3个叶绿体基因对不同区域半夏的分析,阐明了其遗传多样性、遗传结构和地理分布格局,为半夏优良种源的分子筛选和保护提出了科学的建议和保护策略。 展开更多
关键词 半夏 地理分布格局 遗传多样性 遗传结构 避难所
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Rethinking phylogeographic structure and historical refugia in the rufous-capped babbler Cyanoderma ruficeps in light of range-wide genetic sampling and paleodistributional reconstructions 被引量:2
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作者 Peter A. HOSNER Huatao LIU +1 位作者 A. Townsend PETERSON Robert G. MOYLE 《Current Zoology》 SCIE CAS CSCD 2015年第5期901-909,共9页
关键词 历史气候变化 系统地理学 人口结构 取样 避难所 末次间冰期 模型预测 遗传
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Influence of slope position and aspect on the vegetation attributes and treewater relations in forests of the central Himalayas
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作者 Vidit TYAGI Surendra P.SINGH +3 位作者 Ripu Daman SINGH Surabhi GUMBER Rajesh THADANI Rajiv PANDEY 《Journal of Mountain Science》 SCIE CSCD 2023年第9期2592-2602,共11页
While the need for understanding the effects of topographical factors on forest structure and function is well recognized,comprehensive studies are scarce.This study evaluates the effect of slope aspect and slope posi... While the need for understanding the effects of topographical factors on forest structure and function is well recognized,comprehensive studies are scarce.This study evaluates the effect of slope aspect and slope position on water relations and forest attributes across six forest types occurring between 400 m and 2600 m altitude in the Central Himalaya(27°-38°N).We found that predawn tree water potential and soil water potential were generally higher on moist north slope aspect(-0.78±0.05 MPa and-3.34±0.18 MPa,respectively)than dry south slope aspect(-0.82±0.18 MPa and-3.77±0.18 MPa,respectively).Across six different forests,these values were higher at hill base(-0.71±0.06 MPa and-2.77±0.19 MPa,tree predawn water potential and soil water potential,respectively)than other topographical positions.The favorable effect of north aspect and hill base was also observed in maintaining soil water and tree water potential during the dry season.Vegetation attributes,such as species richness,unique species and plant density were also generally higher on north slope and hill base than southern aspect and lowest at hill top.Across forest types,the hill base provided shelter to 46 unique species,compared to 16-18 at the other positions,thus emphasizing its importance as refugia for species to survive climate change induced perturbations.The favorable conditions of hill base position not only contribute to increase in alpha diversity,but also to extended species distributional range. 展开更多
关键词 Hill base HIMALAYA refugia Unique species Water relation
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四照花物种分布格局模拟及冰期避难所推测 被引量:20
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作者 管毕财 陈微 +3 位作者 刘想 蔡奇英 刘以珍 葛刚 《西北植物学报》 CAS CSCD 北大核心 2016年第12期2541-2547,共7页
气候是影响物种多样性的重要自然因素,同时也影响生物的生长发育及其分布。该文以广泛分布于中国的观花植物四照花为研究对象,通过植物标本库查询和野外实地调查确定四照花在中国的分布情况,利用MaxEnt模型和ArcGIS软件模拟四照花的历... 气候是影响物种多样性的重要自然因素,同时也影响生物的生长发育及其分布。该文以广泛分布于中国的观花植物四照花为研究对象,通过植物标本库查询和野外实地调查确定四照花在中国的分布情况,利用MaxEnt模型和ArcGIS软件模拟四照花的历史分布格局、当前分布格局及未来的分布趋势,计算不同时期物种分布面积的变化并分析物种分布变化产生的原因。研究结果显示:四照花当前的分布主要受降水量变异系数、最冷月份最低温、最冷季节平均温度和温度季节变化4个生物气候因子影响。此外,基于四照花在末次盛冰期、全新世中期和当前的分布格局的变化推测:冰期来临时,中西部的大巴山地区和东部天目山地区是四照花潜在分布的核心区,为四照花的冰期避难所。 展开更多
关键词 四照花 冰期避难所 物种分布模型 地理信息系统
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中国大陆第四纪冰期潜在植物避难所研究进展 被引量:42
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作者 陈冬梅 康宏樟 刘春江 《植物研究》 CAS CSCD 北大核心 2011年第5期623-632,共10页
研究第四纪冰期潜在植物避难所,对了解当今植物分布格局和未来的演变具有重要意义,是全球变化生态学研究的热点问题。根据已发表的文献,本文综述了我国大陆第四纪冰期冰川的发生规模、范围和对植物分布的影响,探讨了冰期潜在植物避难所... 研究第四纪冰期潜在植物避难所,对了解当今植物分布格局和未来的演变具有重要意义,是全球变化生态学研究的热点问题。根据已发表的文献,本文综述了我国大陆第四纪冰期冰川的发生规模、范围和对植物分布的影响,探讨了冰期潜在植物避难所形成的特点,包括特殊地理位置的生物多样性和避难所残遗种分布等问题。本文还讨论了孢粉分析和分子生物技术的方法在确定冰期植物避难所方面的应用,以及我国科学家在该领域重要研究结果。同时,本文还介绍了国外在该领域的研究进展和我们存在的问题,以期促进我国第四纪冰期植物避难所研究工作的深入开展。 展开更多
关键词 第四纪冰期 避难所 植物 中国大陆
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基于叶绿体DNA trnL-F序列研究肋果沙棘的谱系地理学 被引量:15
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作者 孟丽华 杨慧玲 +1 位作者 吴桂丽 王玉金 《植物分类学报》 CSCD 北大核心 2008年第1期32-40,共9页
由于青藏高原的地理效应,第四纪冰期气候的反复变化应对现今该地区生物的地理分布及其居群遗传结构产生重大影响。肋果沙棘Hippophae neurocarpa是青藏高原地区的一个特有种,根据叶上的附属物(星状鳞毛或者鳞片状鳞毛)分为两个亚种:肋... 由于青藏高原的地理效应,第四纪冰期气候的反复变化应对现今该地区生物的地理分布及其居群遗传结构产生重大影响。肋果沙棘Hippophae neurocarpa是青藏高原地区的一个特有种,根据叶上的附属物(星状鳞毛或者鳞片状鳞毛)分为两个亚种:肋果沙棘亚种subsp.neurocarpa和密毛肋果沙棘亚种subsp.stellatopilosa。依据母系遗传的叶绿体DNA片段对该物种谱系地理学进行研究不仅能阐明该物种冰期避难所,而且对于理解两个亚种的母系分化也具有重要意义。共对两个亚种14居群的70个个体的trnL-F序列进行了测序,共发现8种单倍型,其中5种单倍型出现在肋果沙棘亚种中,4种出现在密毛肋果沙棘亚种中,两个亚种共享一种单倍型。种内谱系分化与两个亚种形态上的分化不一致。嵌套进化分支把8种单倍型分为三支:一支为肋果沙棘亚种,其他两支中两个亚种单倍型嵌套组成,且肋果沙棘亚种处于进化末端。我们的研究结果还表明肋果沙棘在冰期可能在高海拔地区存在多个避难所,并且存在来自避难所的邻域扩张。 展开更多
关键词 邻域扩张 叶绿体DNA 肋果沙棘 谱系地理学 青藏高原 避难所 亚种分化 TRNL-F序列
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青藏高原及其周边地区高山植物谱系地理学研究进展 被引量:26
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作者 于海彬 张镱锂 《西北植物学报》 CAS CSCD 北大核心 2013年第6期1268-1278,共11页
青藏高原及其周边地区是世界上高山植物最丰富的地区,通过谱系地理学研究可以探讨高山植物演化历史与高原隆升和第四纪冰期的关系。根据对已经报道的36种高山植物的谱系地理分析,其谱系地理模式主要表现为:一、冰期退却到高原边缘的避难... 青藏高原及其周边地区是世界上高山植物最丰富的地区,通过谱系地理学研究可以探讨高山植物演化历史与高原隆升和第四纪冰期的关系。根据对已经报道的36种高山植物的谱系地理分析,其谱系地理模式主要表现为:一、冰期退却到高原边缘的避难所,冰后期回迁到高原面;二、地理隔离造成冰期存在多处避难所(含微型避难所),冰后期发生局域性扩张。青藏高原在晚第三纪的快速隆升促进了物种的分化和成种,而第四纪冰期更是加剧了物种的快速分化,高原隆升和第四纪周期性气候波动是形成青藏高原高山植物现代谱系地理格局的主要原因。横断山脉地区作为第四纪冰期高山植物的主要避难所,在进化生物学和保护生物学方面具有重要启示。最后在物种选择、采样策略、基因片段选择和研究方法等4个方面提出青藏高原地区谱系地理学的研究方向。 展开更多
关键词 谱系地理学 高山植物 青藏高原 第四纪冰期 避难所
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青藏高原及其毗邻山区蒙古绣线菊谱系地理学研究 被引量:5
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作者 王久利 高庆波 +3 位作者 付鹏程 GULZAR Khan 陈世龙 张发起 《西北植物学报》 CAS CSCD 北大核心 2014年第10期1981-1991,共11页
以青藏高原及其毗邻山区的蒙古绣线菊23个居群324个个体为研究对象,选取叶绿体DNA非编码区trnL-trnF和rps15-ycf1片段对蒙古绣线菊进行谱系地理学研究。结果表明:(1)该研究区域中蒙古绣线菊亲缘关系相近的单倍型多发生于同一居群中,存... 以青藏高原及其毗邻山区的蒙古绣线菊23个居群324个个体为研究对象,选取叶绿体DNA非编码区trnL-trnF和rps15-ycf1片段对蒙古绣线菊进行谱系地理学研究。结果表明:(1)该研究区域中蒙古绣线菊亲缘关系相近的单倍型多发生于同一居群中,存在着明显的谱系地理学关系。(2)所检测得到的35个单倍型中,大约71.4%是居群内特有的单倍型,而出现频率最高的H1是最古老的单倍型,贝叶斯分析和单倍型简约网状图显示35个单倍型聚为地理分布范围各不相同的3个分支。(3)歧点分布分析得到分布图呈多峰曲线,说明蒙古绣线菊居群在较长的时间内发展稳定,没有经历突然的近期扩张。(4)BEAST分析结果显示,在45Mya左右开始出现蒙古绣线菊的谱系分支的分化。研究认为,蒙古绣线菊在青藏高原及其毗邻山区可能至少存在3个冰期避难所,其在青藏高原及其毗邻山区的分布格局主要是第四纪冰期-间冰期气候动荡、青藏高原隆升的共同作用的结果。 展开更多
关键词 蒙古绣线菊 谱系地理学 冰期避难所 青藏高原
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长江河口湿地不同植被中无齿螳臂相手蟹的分布及其洞穴利用 被引量:13
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作者 熊李虎 陆健健 《动物学杂志》 CAS CSCD 北大核心 2009年第6期1-9,共9页
无齿螳臂相手蟹(Chiromantes dehaani)是长江河口中、高潮滩的优势底栖动物之一,具有重要的生态功能。由于其经济价值较低,所受关注很少。本文调查了相似高程芦苇(Phragmites australis)带、芦苇斑块、菰(Zizania aquatica)植被以及裸地... 无齿螳臂相手蟹(Chiromantes dehaani)是长江河口中、高潮滩的优势底栖动物之一,具有重要的生态功能。由于其经济价值较低,所受关注很少。本文调查了相似高程芦苇(Phragmites australis)带、芦苇斑块、菰(Zizania aquatica)植被以及裸地4种生境中无齿螳臂相手蟹的数量分布及其洞穴的利用情况。有植被分布的3种生境间植株密度、植株高度和植物干重生物量(地上部分)差异显著(P<0.001);4种生境间,陷阱桶采样获取的无齿螳臂相手蟹数量分布(P<0.001)和性比(P=0.001)差异显著;裸地区域没有无齿螳臂相手蟹可用的洞穴分布,芦苇带、芦苇斑块和菰植被间无齿螳臂相手蟹可用的洞穴密度(P<0.019)、单位洞穴蟹个体数(P<0.001)差异显著,挖掘洞穴采样获取的无齿螳臂相手蟹密度差异接近显著水平(P=0.067),洞穴占用率(P=0.667)、不同洞穴占用方式频次组成(P>0.05)差异不显著;无齿螳臂相手蟹可利用洞穴密度与植株密度、植物干重生物量显著负相关(P<0.05),而挖掘洞穴采样获取的无齿螳臂相手蟹密度与植株高度(P=0.077)相关性接近显著水平且与洞穴密度(P<0.001)显著正相关。这些结果表明盐沼植被对无齿螳臂相手蟹的分布和洞穴利用存在影响。而进一步探讨盐沼不同植被对无齿螳臂相手蟹分布的影响,需要先了解无齿螳臂相手蟹在不同植被中分布格局在时间上的变化,并结合无齿螳臂相手蟹在不同植被间的迁移行为以及繁殖周期等进行探讨。 展开更多
关键词 无齿螳臂相手蟹 植被 分布 庇护所 盐沼 洞穴
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伯乐树潜在地理分布时空格局模拟 被引量:15
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作者 郭飞龙 徐刚标 +1 位作者 牟虹霖 李赞 《植物科学学报》 CAS CSCD 北大核心 2020年第2期185-194,共10页
以伯乐树(Bretschneidera sinensis Hemsl.)为研究对象,基于现有的151个伯乐树居群分布点及12个气候变量,运用MaxEnt模型和GIS技术,模拟末次盛冰期、全新世中期、当前、未来(RCP 2.6、RCP 4.5、RCP 6.0和RCP 8.5)气候情景下的伯乐树潜... 以伯乐树(Bretschneidera sinensis Hemsl.)为研究对象,基于现有的151个伯乐树居群分布点及12个气候变量,运用MaxEnt模型和GIS技术,模拟末次盛冰期、全新世中期、当前、未来(RCP 2.6、RCP 4.5、RCP 6.0和RCP 8.5)气候情景下的伯乐树潜在地理分布格局;采用受试者工作特征曲线(ROC)下的面积(AUC值),评价模拟的精度;综合分析测试增益、气候变量贡献率及置换重要值,探讨制约伯乐树地理分布的主导气候变量;基于分布面积比(N a)、生境变化程度(N e),比较伯乐树在不同气候情景下的地理分布动态。ROC曲线结果显示,7种不同气候情景下的训练集与测试集AUC值均大于0.99,表明模型模拟精度极高。测试增益、气候变量贡献率及置换重要值显示,昼夜温差月均值、等温性和最干季度降水量是伯乐树潜在地理分布的限制因子。不同气候情景下伯乐树地理分布动态暗示,金佛山、大瑶山可能是伯乐树冰期多个微型避难所;末次盛冰期以来,伯乐树地理分布经历了扩张过程;未来不同气候情景下,其地理分布范围可能会发生不同程度(25%~47%)的收缩,其中RCP 8.5情境下,伯乐树居群生境破碎化最为严重。开展伯乐树资源调查、收集和遗传管理的国际合作,在气候适宜地区建立迁地保育林,是有效防止伯乐树遗传资源丢失的重要措施。 展开更多
关键词 伯乐树 居群时空分布格局 冰期避难所 最大熵模型(MaxEnt)
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榧树居群遗传多样性的cpSSR分析 被引量:11
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作者 易官美 邱迎君 《果树学报》 CAS CSCD 北大核心 2014年第4期583-588,753,共7页
【目的】探讨全球气候变化和人类活动干扰对榧树遗传多样性的影响。【方法】采用叶绿体基因组SSR分子标记的方法,对榧树自然分布区10个居群的遗传多样性和遗传结构进行了研究。【结果】5个cpSSR多态性位点共检测到17个等位基因,可组成2... 【目的】探讨全球气候变化和人类活动干扰对榧树遗传多样性的影响。【方法】采用叶绿体基因组SSR分子标记的方法,对榧树自然分布区10个居群的遗传多样性和遗传结构进行了研究。【结果】5个cpSSR多态性位点共检测到17个等位基因,可组成28个单倍型。单倍型H3和H13是所有居群共有的单倍型。榧树叶绿体基因组的遗传多样性HE为0.157(0.098~0.211),明显低于其他针叶树种叶绿体基因组的遗传多样性(0.370)。榧树的遗传多样性主要分布于居群内(97.95%),居群间的遗传分化GST为0.020 3,低于其他37种针叶树种的遗传分化(0.165)。【结论】榧树居群经历了历史瓶颈效应。武夷山、黄山、会稽山和天目山等山区可能是榧树在第4纪气候振荡期的孑遗地。瓶颈效应和遗传漂变是形成榧树单倍型分布式样的重要原因。 展开更多
关键词 榧树 遗传多样性 遗传结构 CPSSR 孑遗地
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基于叶绿体微卫星研究鄂报春谱系遗传结构(英文) 被引量:5
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作者 颜海飞 彭镜毅 +1 位作者 胡启明 郝刚 《植物分类学报》 CSCD 北大核心 2007年第4期488-496,共9页
鄂报春Primula obconica作为一种广泛栽培的园艺植物,其野生居群的遗传多样性及遗传结构的研究还少见报道。本文通过叶绿体微卫星分析了17个鄂报春野生居群(共278个个体),共发现4个多态性位点(16个等位基因),得到14个单倍型。结果表明... 鄂报春Primula obconica作为一种广泛栽培的园艺植物,其野生居群的遗传多样性及遗传结构的研究还少见报道。本文通过叶绿体微卫星分析了17个鄂报春野生居群(共278个个体),共发现4个多态性位点(16个等位基因),得到14个单倍型。结果表明鄂报春具有很高的总基因多样性(HT=0.971)和极低的居群内基因多样性(HS=0.028);分子方差分析(AMOVA)显示98%的变异存在于居群间。这些结果说明早期的生境片断化及有限的种子传播能力是造成当前遗传结构的重要原因。Nst值显著大于Gst值,表明关系相近的单倍型会出现在相同的地区内,同时最小生成树(MST)的分析结果证实了这样的结论。我们在最小生成树的两个组中推断出一些古老单倍型,并推测在冰期时湖北和我国的西南地区可能是该物种的避难所。 展开更多
关键词 鄂报春 遗传多样性 叶绿体微卫星 冰期 避难所
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Evolutionary history and phylogeography of Scots pine (Pinus sylvestris L.) in Europe based on molecular markers 被引量:3
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作者 Endre Gy. To′th Zolta′n A. Kobolkuti +1 位作者 Andrzej Pedryc Ma′ria Hohn 《Journal of Forestry Research》 SCIE CAS CSCD 2017年第4期637-651,共15页
In this review we summarized recent historical records and molecular studies on evolutionary history and phylogeography of Scots pine with focus on the European highly fragmented distribution area of the species. Foss... In this review we summarized recent historical records and molecular studies on evolutionary history and phylogeography of Scots pine with focus on the European highly fragmented distribution area of the species. Fossilized pollen, plant micro- and macrofossil records provided evidences on the large-scale species’ range shifts and demographic changes during the Quaternary. Populations of Scots pine were documented both in the glacial (incl. full glaciation) and interglacial periods. Recolonization of Europe after the glaciation originated from the (Sub) Mediterranean areas like the Balkan Peninsula but also from around the Eastern Alps and the surroundings of the Danube plain. Fennoscandia and northern European Baltic regions were most probably colonized from two main directions, from Western Europe and from the Russian Plain. Modern history of Scots pine was hardly affected by anthropogenic activities that started to strengthen in the Bronze and Iron Age. Along with the fossil records, molecular genetic tools were used to infer the origin and putative history including migration, differentiation and demography of the species. In this paper we compiled the major publications (30) of molecular genetic studies of the past 20?years derived from distinctly inherited organelle genomes (mitochondrial, chloroplast, nuclear) revealed by different marker systems (mtDNA-cox1, -nad1, -nad3, -nad7, ISSR, cpSSR, nSSR, B-SAP, SNP). It is important to consider that different phylogeographic patterns can be drawn by the analysis of different DNA marker types. Accordingly the use of more than one marker simultaneously outlines the most sophisticated phylogeographical pattern on the genetic lineages and can reveal high differentiation of the European distribution. Combined marker systems and markers derived from coding sequences have also been used to detect species’ phylogeographic patterns, but these were rarely applied to Scots pine. Although new molecular techniques can provide higher resolution data for populations, the reviewed results can shape the direction of further studies. 展开更多
关键词 Molecular genetic markers PHYLOGEOGRAPHY Pinus sylvestris Quaternary history refugia
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Population Dynamics Following the Last Glacial Maximum in Two Sympatric Lizards in Northern China 被引量:1
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作者 Yanfu QU Qun ZHAO +1 位作者 Hongliang LU Xiang JI 《Asian Herpetological Research》 SCIE 2014年第4期213-227,共15页
Phylogeographic studies of Eremias lizards (Lacertidae) in East Asia have been limited, and the impact of major climatic events on their population dynamics remains poorly known. This study aimed to investigate popu... Phylogeographic studies of Eremias lizards (Lacertidae) in East Asia have been limited, and the impact of major climatic events on their population dynamics remains poorly known. This study aimed to investigate population histories and refugia during the Last Glacial Maximum of two sympatric Eremias lizards (E. argus and E. brenchleyi) inhabiting northern China. We sequenced partial mitochondrial DNA from the ND4 gene for 128 individuals of E. argus from nine localities, and 46 individuals of E. brenchleyi from five localities. Forty-four ND4 haplotypes were determined from E. argus samples, and 33 from E. brenchleyi samples. Population expansion events began about 0.0044 Ma in E. argus, and 0.031 Ma in E. brenchleyi. The demographic history of E. brenchleyi indicates a long-lasting population decline since the most recent common ancestor, while that of E. argus indicates a continuous population growth. Among-population structure was significant in both species, and there were multiple refugia across their range. Intermittent gene flow occurred among expanded populations across multiple refugia during warmer phases of the glacial period, and this may explain why the effective population size has remained relatively stable in E. brenchleyi and grown in E. argus. 展开更多
关键词 LACERTIDAE Eremias lizards mitochondrial DNA historical demography multiple refugia Last GlacialMaximum
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海洋植物谱系地理模式与遗传连通性研究进展
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作者 胡自民 杜玉群 +2 位作者 梁延硕 钟凯乐 张杰 《海洋与湖沼》 CAS CSCD 北大核心 2021年第2期418-432,共15页
海洋植物谱系地理学虽然在国内受到的关注比较有限,但近年来的研究进展对了解环境变动如何影响物种的多样性结构、生态适应和进化潜力等亦提供了重要信息。本文首先对刊发海洋植物谱系地理研究最具代表性的两本国际期刊《Molecular Ecol... 海洋植物谱系地理学虽然在国内受到的关注比较有限,但近年来的研究进展对了解环境变动如何影响物种的多样性结构、生态适应和进化潜力等亦提供了重要信息。本文首先对刊发海洋植物谱系地理研究最具代表性的两本国际期刊《Molecular Ecology》和《Journal of Biogeography》进行搜索和筛选,从研究团队的地域分布和研究对象的阶元等角度纵览全球范围内近20年间海洋植物谱系地理学研究的现状和特征。其后,本文从洋流如何驱动海洋植物谱系地理结构和多样性、入侵物种的种群遗传变异特征和路径重建、冰期避难所如何影响现今海洋植物遗传结构和地理变动、克隆繁殖和谱系多样化等四个方面概述了这一领域的主要成果进展。最后,本文还从岛屿地理模型、共生物种的谱系协同进化和高通量数据应用等三个方面对海洋植物谱系地理学的发展趋势进行了展望。 展开更多
关键词 海藻 海草 气候变化 冰期避难所 入侵遗传学 遗传多样性保护
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Molecular Phylogeny and Evolution of Two Rhacophorus Species Endemic to Mainland Japan
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作者 Masafumi MATSUI Yasuhiro KAWAHARA +3 位作者 Kanto NISHIKAWA Seiji IKEDA Koshiro ETO Yusuke MIZUNO 《Asian Herpetological Research》 SCIE CSCD 2019年第2期86-104,共19页
We conducted molecular phylogenetic analyses of Japanese Rhacophorus species, especially of R. schlegelii and R. arboreus from the mainland, based on samples encompassing their known distribution ranges, and discussed... We conducted molecular phylogenetic analyses of Japanese Rhacophorus species, especially of R. schlegelii and R. arboreus from the mainland, based on samples encompassing their known distribution ranges, and discussed about evolutionary history of Rhacophorus species within Japan. The common ancestor of Japanese Rhacophorus, except for R. owstoni from southern Ryukyus, was estimated to have diverged from a lineage occurring mainly in China about 7 MYBP. Both R. schlegelii and R. arboreus are genetically largely divergent between regions of eastern and western Japan, and this seems to have been promoted mainly by retreat to refugia. Retreats of the two species to different refugia sometimes in the past seem to have led restricted distribution of R. schlegelii in eastern and R. arboreus in western Japan, and brought their intraspecific variation patterns in morphology and breeding habit. 展开更多
关键词 GLACIAL PERIOD MITOCHONDRIAL DNA differentiation refugia Rhacophorus arboreus Rhacophorus schlegelii
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The past,present,and future of the Siberian Grouse(Falcipennis falcipennis)under glacial oscillations and global warming
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作者 Wendong Xie Kai Song +2 位作者 Siegfried Klaus Jon E.Swenson Yue-Hua Sun 《Avian Research》 SCIE CSCD 2022年第1期57-63,共7页
Global climate change has a significant effect on species,as environment conditions change,causing many species'distributions to shift.During the last three million years,the earth has experienced glacial oscillat... Global climate change has a significant effect on species,as environment conditions change,causing many species'distributions to shift.During the last three million years,the earth has experienced glacial oscillations,forcing some species to survive in ice-free refugia during glacial periods and then disperse postglacially.In this study,by assessing the potential distribution of Siberian Grouse(Falcipennis falcipennis),we used Global Circular Models and Representative Concentration Pathways to model their pattern of range changes during glacial oscillations and the potential impact of present global warming.We used 158 location records of Siberian Grouse to generate a full climate model using 19 bioclimate variables in MaxEnt.We discarded variables with a correlation coefficient larger than 0.8 and relatively lower modeling contributions between each pair of correlated variables.Using the remaining variables,we created a normally uncorrelated simple climate model to predict the possible distribution of Siberian Grouse from the most recent Ice Age to present and to 2070.Then we added geographical data and the human interference index to construct a multiple factor full model to evaluate which were important in explaining the distribution of Siberian Grouse.The Total Suitability Zone(P≥0.33)of Siberian Grouse is about 243,000km^(2) and the Maximum Suitability Zone(P≥0.66)is 36,000km^(2) and is confined to the Russian Far East.Potential habitat modeling suggested that annual precipitation,annual mean temperature,and the distance from lakes are the most explanatory variables for the current distribution of Siberian Grouse.The distribution center moved to the southeast during the Last Glacial Maximum and spread back to the northwest after the ice melted and temperatures rose.The total area range of Siberian Grouse experienced a dramatic loss during the Last Glacial Maximum.Global warming is presently forcing the Siberian Grouse to migrate northward with a contraction of its range.There is an urgent need to protect its habitat,because little of its Maximum Sustainable Zone is protected,although there are some large reserves in that area. 展开更多
关键词 Climate change Falcipennis falcipennis Ice age refugia Last glacial maximum
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江孜沙棘和云南沙棘之间谱系分化和亲缘地理 被引量:8
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作者 程凯 孙坤 +3 位作者 温红艳 张敏 贾东瑞 刘建全 《植物生态学报》 CAS CSCD 北大核心 2009年第1期1-11,共11页
研究具有邻近分布的近缘类群的遗传分化和谱系筛选对于进一步揭示物种形成机制具有重要意义。该文以沙棘属(Hippophae)临域分布的两个类群,江孜沙棘(H.gyantsensis)和云南沙棘(H.rhamnoides subsp.yunnanensis)为研究对象,进行群体水平... 研究具有邻近分布的近缘类群的遗传分化和谱系筛选对于进一步揭示物种形成机制具有重要意义。该文以沙棘属(Hippophae)临域分布的两个类群,江孜沙棘(H.gyantsensis)和云南沙棘(H.rhamnoides subsp.yunnanensis)为研究对象,进行群体水平上的母系分化研究。前一个种分布于西藏的中西部,而后者主要分布于青藏高原东南部的云南西北部、四川西部和西藏东南部。两个类群在叶和果实性状存在明显区别。叶绿体在沙棘属植物中为母系遗传。共研究了两个类群14种群109个沙棘个体的叶绿体trnL-F、trnS-G序列;序列排序后共发现11种单倍型,江孜沙棘和云南沙棘分别有7种和6种,两种单倍型为两个类群共享。分支分析和嵌套进化分析进一步表明,两个类群之间的单倍型相互交错,单倍型分化与形态上划分的两个类群不一致,表明它们之间具有十分复杂的谱系筛选过程。这些发现明显不支持以前提出的有关江孜沙棘系统位置的假设。但是,目前所获得的证据不能区分该物种究竟是通过异域分化还是同倍性杂交起源的。不同种群固定特有单倍型表明,两个类群都在最后一次冰期可能存在多个避难所。 展开更多
关键词 云南沙棘 江孜沙棘 叶绿体DNA TRNL-F DNA trnS-G序列 谱系筛选 物种形成 避难所
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