The article established the HDRICE model by modifying the structure of the ORYZA1 model and revising its parameters by field experiments. The HDRICE model consists of the modules of morphological development of rice, ...The article established the HDRICE model by modifying the structure of the ORYZA1 model and revising its parameters by field experiments. The HDRICE model consists of the modules of morphological development of rice, daily dry matter accumulation and partitioning, daily CO2 assimilation of the canopy, leaf area, and tiller development. The model preferably simulated the dynamic rice development because of the thorough integration of the effects of temperature and light on the rates of rice development, photosynthesis, respiration, and. other ecophysiological processes. In addition, this model has attainable grain yield in the test experiment that showed the potential yield of cultivar Xieyou 46 ranged from 11 to 13 tons ha-~. Besides, the model was used to optimize the combinations of the transplanting date, seedling age and density for cultivar Xieyou 46 at Jinhua area, and the population quantitative indices to attain the potential yield such as maximum stems, effective panicles, filled grain number/leaf area, and so on. The result showed that the combination of transplanting date on July 25, seedling age of 35 days and base seedling density of 1.33 x 106ha-1 is the optimum combination for the second hybrid rice production in Jinhua County, China. And the maximum stems, the effective panicles, the filled grain per panicle, the peak of optimum LAI, LAI in later filling stage, and the filled grain number/leaf were 6.03×10^6ha, 3.99×10^6ha, 119.2, 8.59, 5-6, and 0.64, respectively.展开更多
Numerous Bt rice lines expressing Cry protein derived from Bacillus thuringiensis Berliner (Bt) have been developed since 1989. However, the potential risks posed by Bt rice on non-target organisms still remain deba...Numerous Bt rice lines expressing Cry protein derived from Bacillus thuringiensis Berliner (Bt) have been developed since 1989. However, the potential risks posed by Bt rice on non-target organisms still remain debate. The white-backed planthopper (WBPH), Sogatella furcifera (Horváth), is one of the most economically important insect pests of rice in Asian countries and also one of the main non-target herbivores of transgenic rice. In the current study, impacts of transgenic cry1Ab/vip3H+epsps rice (G6H1) with both insect and herbicide resistance on WBPH were evaluated to ascertain whether this transgenic rice line had potential risks for this sap-sucking pest under laboratory and ifeld conditions. The laboratory results showed that no signiifcant difference in egg developmental duration, nymphal survival rate and female fecundity was found for WBPH between G6H1 and its non-transgenic isoline (XS110). However, the development duration of nymphs was signiifcantly shorter and female longevity signiifcantly longer when WBPH fed on G6H1 by comparison with those on its control. To verify the results found in laboratory, a 3-yr ifeld trial was conducted to monitor WBPH population using both the vacuum-suction machine and beat plate methods. Although the seasonal density of WBPH nymphs and total density of nymphs and adults were not signiifcantly affected by transgenic rice regardless of the sampling methods, the seasonal density of WBPH adults in transgenic rice plots was slightly lower than that in the control when using the vacuum-suction machine. Based on these results both from laboratory and ifeld, it is clear that our tested transgenic rice line will not lead higher population of WBPH. However, long-term ifeld experiments to monitor the population dynamics of WPBH at large scale need to be conducted to conifrm the present conclusions in future.展开更多
This paper was to develop a model for simulating the leaf color changes in rice (Oryza sativa L.) based on RGB (red, green, and blue) values. Based on rice experiment data with different cultivars and nitrogen (N...This paper was to develop a model for simulating the leaf color changes in rice (Oryza sativa L.) based on RGB (red, green, and blue) values. Based on rice experiment data with different cultivars and nitrogen (N) rates, the time-course RGB values of each leaf on main stem were collected during the growth period in rice, and a model for simulating the dynamics of leaf color in rice was then developed using quantitative modeling technology. The results showed that the RGB values of leaf color gradually decreased from the initial values (light green) to the steady values (green) during the first stage, remained the steady values (green) during the second stage, then gradually increased to the final values (from green to yellow) during the third stage. The decreasing linear functions, constant functions and increasing linear functions were used to simulate the changes in RGB values of leaf color at the first, second and third stages with growing degree days (GDD), respectively; two cultivar parameters, MatRGB (leaf color matrix) and AR (a vector composed of the ratio of the cumulative GDD of each stage during color change process of leaf n to that during leaf n drawn under adequate N status), were introduced to quantify the genetic characters in RGB values of leaf color and in durations of different stages during leaf color change, respectively; FN (N impact factor) was used to quantify the effects of N levels on RGB values of leaf color and on durations of different stages during leaf color change; linear functions were applied to simulate the changes in leaf color along the leaf midvein direction during leaf development process. Validation of the models with the independent experiment dataset exhibited that the root mean square errors (RMSE) between the observed and simulated RGB values were among 8 to 13, the relative RMSE (RRMSE) were among 8 to 10%, the mean absolute differences (da) were among 3.85 to 6.90, and the ratio of da to the mean observation values (Clap) were among 3.04 to 4.90%. In addition, the leaf color model was used to render the leaf color change over growth progress using the technology of visualization, with a good performance on predicting dynamic changes in rice leaf color. These results would provide a technical support for further developing virtual plant during rice growth and development.展开更多
In this paper, a three level characteristic difference scheme is proposed for the model of age structured population with history dependent mortality and natality. It is proved that the scheme is second order converge...In this paper, a three level characteristic difference scheme is proposed for the model of age structured population with history dependent mortality and natality. It is proved that the scheme is second order convergent in the discrete l ∞ norm.展开更多
Transgenic Bt rice has been shown to be an effective means of controlling Lepidoptera pests of rice. However, the potential roles of transgenic rice on planthoppers and their predators need to be investigated before i...Transgenic Bt rice has been shown to be an effective means of controlling Lepidoptera pests of rice. However, the potential roles of transgenic rice on planthoppers and their predators need to be investigated before its commercialization. Population density, species dominance and population dynamics are important parameters of arthropods populations in field. So the impacts of three transgenic Bt rice strains expressing crylAb/crylAc, crylC and cry2A on population density, species dominance and population dynamics of three species of planthoppers (Nilaparvata lugens, Sogatella furcifera and Laodelphax striatellus) and their three main predators ( Cyrtorhinus lividipennis, Pirata subpiraticus and Theridium octomaculatum) were evaluated at three sites in Hubei Province, China, in the current study. The results showed that among three species of planthoppers, both in transgenic and non-transgenic rice field, the predominant species ofplanthoppers within phytophagous guild was S. furcifera at any site either growing season (46-50%). Significantly higher population density ofN. lugens was observed in T2A-1 field relative to Minghui 63 field at Wuxue in 2010. The species dominance of predator, P. subpiraticus, in TT51 field was significantly higher than that in T 1 C-19 and T2A-1 fields in 2009 at Xiaogan site. Sampling date significantly influenced six arthropods except for P. subpiraticus in 2010. The interaction between rice strain^sampling date had no significant adverse effects on the population dynamics of three species of planthoppers and their predators, except for several individual species in 2009. The interaction among rice strain^sampling date^sampling site also had no significant effect on six arthropods except for S. furcifera in 2009. The results indicated that transgenic Bt rice expressing crylAb/crylAc, cry2A and crylC had no significant adverse effects on the population dynamics of three planthoppers and their predators in most investigated data and sampling site.展开更多
Sheath blight of rice, caused by Rhizoctonia solani AG 1. 1a, has become the most important disease and caused serious yield losses in some major rice-growing regions in China in recent years. In the present study, fi...Sheath blight of rice, caused by Rhizoctonia solani AG 1. 1a, has become the most important disease and caused serious yield losses in some major rice-growing regions in China in recent years. In the present study, field plot experiment was conducted to examine the relationships between disease intensity and inoculum density (ID), the seasonal disease epidemic dynamics, and yield reductions due to disease damages. Results from the experiment demonstrated that the areas under progress curves of disease severity and those of percent rice tillers diseased were positively and closely related to the relative initial ID of the pathogen. The inoculum density-disease (IDD) relationships were simulated and the impractical linear models were obtained. Both logistic and Gompertz functions could be used to simulate the disease progress dynamics in time, but the progress curves of the disease severity were modeled better by the Gompertz than by logistic function. However, the Richards function was found to be the best in simulating the disease progress curves when a most appropriate value was chosen for the shape parameter m by using the computer software Epitimulator. Sheath blight infection decreased rice yield very significantly and a yield reduction of 40% was recorded in rice crop with the highest inoculum density. Rice yield was linearly and negatively correlated with the disease severity and the percent tillers affected. The simulated models for all these relationships were computed through executing Epitimulator software and were presented in this paper.展开更多
In order to clarify occurrence regularity of major damage generations of Nilaparvata lugens( Stl) in Sandu Shui Autonomous County( Sandu County for short),Guizhou Province,a karst single cropping medium rice region,th...In order to clarify occurrence regularity of major damage generations of Nilaparvata lugens( Stl) in Sandu Shui Autonomous County( Sandu County for short),Guizhou Province,a karst single cropping medium rice region,the population dynamics of N. lugens were systematically studied using the methods of light trap and systematic field survey from 2009 to 2011. The results showed that the number of immigration generations caught by light trap and the actual population of N. lugens in fields were different among three years. The daily maximum trapping numbers of N. lugens amounted to 6 688 in 2009,which were 15. 3 and 2. 5 times of that in 2010 and 2011,respectively. The peak numbers in prediction nursery were 10 777,4 630 and 1 615 heads per hundred hills in 2009,2010 and 2011,respectively. The forth and fifth generations of N. lugens were the major damage generations in single cropping medium rice fields,and the initial immigration day was significantly related with primary-peak day. The occurrence degree of adults and nymphs of N. lugens varied with years and transplanting periods,and the peak days of N. lugens nymphs were from late July to early August in 2010 and 2011. The occurrence peaks of adults and nymphs in late transplanting paddy field were later than that in the early one. Meanwhile,the coexisted various growth periods of rice,due to time differences of transplanting,were conducive to inhabitation and reproduction of N. lugens. The population dynamics of spiders and Cyrtohinus lividipennis well synchronied with that of N. lugens,but predatory capacity of spiders and C. lividipennis was not enough to control N. lugens.展开更多
We present an algorithm for the stochastic simulation of gene expression and heterogeneous population dynamics.The algorithm combines an exact method to simulate molecular-level fluctuations in single cells and a cons...We present an algorithm for the stochastic simulation of gene expression and heterogeneous population dynamics.The algorithm combines an exact method to simulate molecular-level fluctuations in single cells and a constant-number Monte Carlo method to simulate time-dependent statistical characteristics of growing cell populations.To benchmark performance,we compare simulation results with steadystate and time-dependent analytical solutions for several scenarios,including steadystate and time-dependent gene expression,and the effects on population heterogeneity of cell growth,division,and DNA replication.This comparison demonstrates that the algorithm provides an efficient and accurate approach to simulate how complex biological features influence gene expression.We also use the algorithm to model gene expression dynamics within"bet-hedging"cell populations during their adaption to environmental stress.These simulations indicate that the algorithm provides a framework suitable for simulating and analyzing realistic models of heterogeneous population dynamics combining molecular-level stochastic reaction kinetics,relevant physiological details and phenotypic variability.展开更多
The purpose of stock assessment is to support managers to provide intelligent decisions regarding removal from fish populations.Errors in assessment models may have devastating impacts on the population fitness and ne...The purpose of stock assessment is to support managers to provide intelligent decisions regarding removal from fish populations.Errors in assessment models may have devastating impacts on the population fitness and negative impacts on the economy of the resource users.Thus,accuracte estimations of population size,growth rates are critical for success.Evaluating and testing the behavior and performance of stock assessment models and assessing the consequences of model mis-specification and the impact of management strategies requires an operating model that accurately describe the dynamics of the target species,and can resolve spatial and seasonal changes.In addition,the most thorough evaluations of assessment models use an operating model that takes a different form than the assessment model.This paper presents an individual-based probabilistic model used to simulate the complex dynamics of populations and their associated fisheries.Various components of population dynamics are expressed as random Bernoulli trials in the model and detailed life and fishery histories of each individual are tracked over their life span.The simulation model is designed to be flexible so it can be used for different species and fisheries.It can simulate mixing among multiple stocks and link stock-recruit relationships to environmental factors.Furthermore,the model allows for flexibility in sub-models(e.g.,growth and recruitment)and model assumptions(e.g.,age-or size-dependent selectivity).This model enables the user to conduct various simulation studies,including testing the performance of assessment models under different assumptions,assessing the impacts of model mis-specification and evaluating management strategies.展开更多
We present an accelerated method for stochastically simulating the dynamics of heterogeneous cell populations.The algorithm combines a Monte Carlo approach for simulating the biochemical kinetics in single cells with ...We present an accelerated method for stochastically simulating the dynamics of heterogeneous cell populations.The algorithm combines a Monte Carlo approach for simulating the biochemical kinetics in single cells with a constant-number Monte Carlo method for simulating the reproductive fitness and the statistical characteristics of growing cell populations.To benchmark accuracy and performance,we compare simulation results with those generated from a previously validated population dynamics algorithm.The comparison demonstrates that the accelerated method accurately simulates population dynamics with significant reductions in runtime under commonly invoked steady-state and symmetric cell division assumptions.Considering the increasing complexity of cell population models,the method is an important addition to the arsenal of existing algorithms for simulating cellular and population dynamics that enables efficient,coarse-grained exploration of parameter space.展开更多
The impacts of transgenic Bt rice on target pests and their predators need to be clarified prior to the commercialization of Bt rice.In this study,the percentages of folded leaves of three transgenic Bt rice lines and...The impacts of transgenic Bt rice on target pests and their predators need to be clarified prior to the commercialization of Bt rice.In this study,the percentages of folded leaves of three transgenic Bt rice lines and non-transgenic parental rice line caused by Cnaphalocrocis medinalis were studied over two successive growing seasons.In addition,the population densities,relative abundance and population dynamics of C.medinalis and four species of its natural arthropod predators were investigated at three sites in China.The results showed that rice line significantly affected the percentages of folded leaves and population densities of C.medinalis larvae.Significantly higher percentages of folded leaves were observed on the non-transgenic rice compared with the three transgenic Bt rice on most sampling dates.Significantly higher densities of C.medinalis larvae and higher relative abundance of C.medinalis within phytophages were found on non-transgenic rice compared with three transgenic Bt rice at different sites across the study period.The population dynamics of C.medinalis larvae were significantly affected by rice line,rice line×sampling date,rice line×year,rice line×sampling date×year.However,there was little,if any,significant difference in the relative abundance,population density and population dynamics of the four arthropod predators between the three Bt rice lines and non-transgenic rice.The results of this study indicate that the Bt toxin in transgenic Bt rice can effectively suppress the occurrence of C.medinalis,but has no significant effects on the occurrence of the four predatory arthropod species.展开更多
Dynamic modeling and numerical simulation of hydrate slurry flow behavior are of great importance to offshore hydrate management.For this purpose, a dynamic model of hydrate agglomeration was proposed in this paper.Ba...Dynamic modeling and numerical simulation of hydrate slurry flow behavior are of great importance to offshore hydrate management.For this purpose, a dynamic model of hydrate agglomeration was proposed in this paper.Based on population balance equation, the frame of the dynamic model was established first, which took both hydrate agglomeration and hydrate breakage into consideration.Then, the calculating methods of four key parameters involved in the dynamic model were given according to hydrate agglomeration dynamics.The four key parameters are collision frequency, agglomeration efficiency, breakage frequency and the size distribution of sub particles resulting from particle breakage.After the whole dynamic model was built, it was combined with several traditional solid–liquid flow models and then together solved by the CFD software FLUENT 14.5.Finally, using this method, the influences of flow rate and hydrate volume fraction on hydrate particle size distribution, hydrate volume concentration distribution and pipeline pressure drop were simulated and analyzed.展开更多
基金supported by the National Natural Science Foundation of China(69673044).
文摘The article established the HDRICE model by modifying the structure of the ORYZA1 model and revising its parameters by field experiments. The HDRICE model consists of the modules of morphological development of rice, daily dry matter accumulation and partitioning, daily CO2 assimilation of the canopy, leaf area, and tiller development. The model preferably simulated the dynamic rice development because of the thorough integration of the effects of temperature and light on the rates of rice development, photosynthesis, respiration, and. other ecophysiological processes. In addition, this model has attainable grain yield in the test experiment that showed the potential yield of cultivar Xieyou 46 ranged from 11 to 13 tons ha-~. Besides, the model was used to optimize the combinations of the transplanting date, seedling age and density for cultivar Xieyou 46 at Jinhua area, and the population quantitative indices to attain the potential yield such as maximum stems, effective panicles, filled grain number/leaf area, and so on. The result showed that the combination of transplanting date on July 25, seedling age of 35 days and base seedling density of 1.33 x 106ha-1 is the optimum combination for the second hybrid rice production in Jinhua County, China. And the maximum stems, the effective panicles, the filled grain per panicle, the peak of optimum LAI, LAI in later filling stage, and the filled grain number/leaf were 6.03×10^6ha, 3.99×10^6ha, 119.2, 8.59, 5-6, and 0.64, respectively.
基金provided by the Special Research Projects for Developing Transgenic Plants, China (2013ZX08011-001)China National Science Fund for Innovative Research Group of Biological Control (31021003)the National Basic Research Progarm of China (973 Program, 2007CB109202)
文摘Numerous Bt rice lines expressing Cry protein derived from Bacillus thuringiensis Berliner (Bt) have been developed since 1989. However, the potential risks posed by Bt rice on non-target organisms still remain debate. The white-backed planthopper (WBPH), Sogatella furcifera (Horváth), is one of the most economically important insect pests of rice in Asian countries and also one of the main non-target herbivores of transgenic rice. In the current study, impacts of transgenic cry1Ab/vip3H+epsps rice (G6H1) with both insect and herbicide resistance on WBPH were evaluated to ascertain whether this transgenic rice line had potential risks for this sap-sucking pest under laboratory and ifeld conditions. The laboratory results showed that no signiifcant difference in egg developmental duration, nymphal survival rate and female fecundity was found for WBPH between G6H1 and its non-transgenic isoline (XS110). However, the development duration of nymphs was signiifcantly shorter and female longevity signiifcantly longer when WBPH fed on G6H1 by comparison with those on its control. To verify the results found in laboratory, a 3-yr ifeld trial was conducted to monitor WBPH population using both the vacuum-suction machine and beat plate methods. Although the seasonal density of WBPH nymphs and total density of nymphs and adults were not signiifcantly affected by transgenic rice regardless of the sampling methods, the seasonal density of WBPH adults in transgenic rice plots was slightly lower than that in the control when using the vacuum-suction machine. Based on these results both from laboratory and ifeld, it is clear that our tested transgenic rice line will not lead higher population of WBPH. However, long-term ifeld experiments to monitor the population dynamics of WPBH at large scale need to be conducted to conifrm the present conclusions in future.
基金the National High-Tech R&D Program of China(2013AA100404,2012AA101306-2)the Priority Academic Program Development of Jiangsu Higher Education Institutions of China(PAPD)
文摘This paper was to develop a model for simulating the leaf color changes in rice (Oryza sativa L.) based on RGB (red, green, and blue) values. Based on rice experiment data with different cultivars and nitrogen (N) rates, the time-course RGB values of each leaf on main stem were collected during the growth period in rice, and a model for simulating the dynamics of leaf color in rice was then developed using quantitative modeling technology. The results showed that the RGB values of leaf color gradually decreased from the initial values (light green) to the steady values (green) during the first stage, remained the steady values (green) during the second stage, then gradually increased to the final values (from green to yellow) during the third stage. The decreasing linear functions, constant functions and increasing linear functions were used to simulate the changes in RGB values of leaf color at the first, second and third stages with growing degree days (GDD), respectively; two cultivar parameters, MatRGB (leaf color matrix) and AR (a vector composed of the ratio of the cumulative GDD of each stage during color change process of leaf n to that during leaf n drawn under adequate N status), were introduced to quantify the genetic characters in RGB values of leaf color and in durations of different stages during leaf color change, respectively; FN (N impact factor) was used to quantify the effects of N levels on RGB values of leaf color and on durations of different stages during leaf color change; linear functions were applied to simulate the changes in leaf color along the leaf midvein direction during leaf development process. Validation of the models with the independent experiment dataset exhibited that the root mean square errors (RMSE) between the observed and simulated RGB values were among 8 to 13, the relative RMSE (RRMSE) were among 8 to 10%, the mean absolute differences (da) were among 3.85 to 6.90, and the ratio of da to the mean observation values (Clap) were among 3.04 to 4.90%. In addition, the leaf color model was used to render the leaf color change over growth progress using the technology of visualization, with a good performance on predicting dynamic changes in rice leaf color. These results would provide a technical support for further developing virtual plant during rice growth and development.
文摘In this paper, a three level characteristic difference scheme is proposed for the model of age structured population with history dependent mortality and natality. It is proved that the scheme is second order convergent in the discrete l ∞ norm.
基金supported by the National Genetically Modified Organisms Breeding Major Project:Technology of Environmental Risk Assessment on Transgenic Rice (2008ZX08011-001)Technology of Environment Risk Assessment of Transgenic Rice on Rice Planthopper Population (2009ZX08011-009B)
文摘Transgenic Bt rice has been shown to be an effective means of controlling Lepidoptera pests of rice. However, the potential roles of transgenic rice on planthoppers and their predators need to be investigated before its commercialization. Population density, species dominance and population dynamics are important parameters of arthropods populations in field. So the impacts of three transgenic Bt rice strains expressing crylAb/crylAc, crylC and cry2A on population density, species dominance and population dynamics of three species of planthoppers (Nilaparvata lugens, Sogatella furcifera and Laodelphax striatellus) and their three main predators ( Cyrtorhinus lividipennis, Pirata subpiraticus and Theridium octomaculatum) were evaluated at three sites in Hubei Province, China, in the current study. The results showed that among three species of planthoppers, both in transgenic and non-transgenic rice field, the predominant species ofplanthoppers within phytophagous guild was S. furcifera at any site either growing season (46-50%). Significantly higher population density ofN. lugens was observed in T2A-1 field relative to Minghui 63 field at Wuxue in 2010. The species dominance of predator, P. subpiraticus, in TT51 field was significantly higher than that in T 1 C-19 and T2A-1 fields in 2009 at Xiaogan site. Sampling date significantly influenced six arthropods except for P. subpiraticus in 2010. The interaction between rice strain^sampling date had no significant adverse effects on the population dynamics of three species of planthoppers and their predators, except for several individual species in 2009. The interaction among rice strain^sampling date^sampling site also had no significant effect on six arthropods except for S. furcifera in 2009. The results indicated that transgenic Bt rice expressing crylAb/crylAc, cry2A and crylC had no significant adverse effects on the population dynamics of three planthoppers and their predators in most investigated data and sampling site.
文摘Sheath blight of rice, caused by Rhizoctonia solani AG 1. 1a, has become the most important disease and caused serious yield losses in some major rice-growing regions in China in recent years. In the present study, field plot experiment was conducted to examine the relationships between disease intensity and inoculum density (ID), the seasonal disease epidemic dynamics, and yield reductions due to disease damages. Results from the experiment demonstrated that the areas under progress curves of disease severity and those of percent rice tillers diseased were positively and closely related to the relative initial ID of the pathogen. The inoculum density-disease (IDD) relationships were simulated and the impractical linear models were obtained. Both logistic and Gompertz functions could be used to simulate the disease progress dynamics in time, but the progress curves of the disease severity were modeled better by the Gompertz than by logistic function. However, the Richards function was found to be the best in simulating the disease progress curves when a most appropriate value was chosen for the shape parameter m by using the computer software Epitimulator. Sheath blight infection decreased rice yield very significantly and a yield reduction of 40% was recorded in rice crop with the highest inoculum density. Rice yield was linearly and negatively correlated with the disease severity and the percent tillers affected. The simulated models for all these relationships were computed through executing Epitimulator software and were presented in this paper.
基金Supported by Scientific and Technological Project of Guizhou Province(QKHNY[2010]No.3064)Natural Science Research Project of Guizhou Provincial Department of Education(QJ 2010011)Preliminary Study Project of 973 Program(2009CB125908)
文摘In order to clarify occurrence regularity of major damage generations of Nilaparvata lugens( Stl) in Sandu Shui Autonomous County( Sandu County for short),Guizhou Province,a karst single cropping medium rice region,the population dynamics of N. lugens were systematically studied using the methods of light trap and systematic field survey from 2009 to 2011. The results showed that the number of immigration generations caught by light trap and the actual population of N. lugens in fields were different among three years. The daily maximum trapping numbers of N. lugens amounted to 6 688 in 2009,which were 15. 3 and 2. 5 times of that in 2010 and 2011,respectively. The peak numbers in prediction nursery were 10 777,4 630 and 1 615 heads per hundred hills in 2009,2010 and 2011,respectively. The forth and fifth generations of N. lugens were the major damage generations in single cropping medium rice fields,and the initial immigration day was significantly related with primary-peak day. The occurrence degree of adults and nymphs of N. lugens varied with years and transplanting periods,and the peak days of N. lugens nymphs were from late July to early August in 2010 and 2011. The occurrence peaks of adults and nymphs in late transplanting paddy field were later than that in the early one. Meanwhile,the coexisted various growth periods of rice,due to time differences of transplanting,were conducive to inhabitation and reproduction of N. lugens. The population dynamics of spiders and Cyrtohinus lividipennis well synchronied with that of N. lugens,but predatory capacity of spiders and C. lividipennis was not enough to control N. lugens.
基金the National Science and Engineering Research Council of Canada(NSERC)the Canadian Institutes of Health Research(CIHR)+1 种基金the Academy of Finland(Application Number 129657,Finnish Programme for Centres of Excellence in Research 2006-2011,and 124615)the Tampere Graduate School in Information Science and Engineering(TISE).
文摘We present an algorithm for the stochastic simulation of gene expression and heterogeneous population dynamics.The algorithm combines an exact method to simulate molecular-level fluctuations in single cells and a constant-number Monte Carlo method to simulate time-dependent statistical characteristics of growing cell populations.To benchmark performance,we compare simulation results with steadystate and time-dependent analytical solutions for several scenarios,including steadystate and time-dependent gene expression,and the effects on population heterogeneity of cell growth,division,and DNA replication.This comparison demonstrates that the algorithm provides an efficient and accurate approach to simulate how complex biological features influence gene expression.We also use the algorithm to model gene expression dynamics within"bet-hedging"cell populations during their adaption to environmental stress.These simulations indicate that the algorithm provides a framework suitable for simulating and analyzing realistic models of heterogeneous population dynamics combining molecular-level stochastic reaction kinetics,relevant physiological details and phenotypic variability.
基金Financial support for this project was provided by Shanghai Ocean University International Center for Marine Sciences.
文摘The purpose of stock assessment is to support managers to provide intelligent decisions regarding removal from fish populations.Errors in assessment models may have devastating impacts on the population fitness and negative impacts on the economy of the resource users.Thus,accuracte estimations of population size,growth rates are critical for success.Evaluating and testing the behavior and performance of stock assessment models and assessing the consequences of model mis-specification and the impact of management strategies requires an operating model that accurately describe the dynamics of the target species,and can resolve spatial and seasonal changes.In addition,the most thorough evaluations of assessment models use an operating model that takes a different form than the assessment model.This paper presents an individual-based probabilistic model used to simulate the complex dynamics of populations and their associated fisheries.Various components of population dynamics are expressed as random Bernoulli trials in the model and detailed life and fishery histories of each individual are tracked over their life span.The simulation model is designed to be flexible so it can be used for different species and fisheries.It can simulate mixing among multiple stocks and link stock-recruit relationships to environmental factors.Furthermore,the model allows for flexibility in sub-models(e.g.,growth and recruitment)and model assumptions(e.g.,age-or size-dependent selectivity).This model enables the user to conduct various simulation studies,including testing the performance of assessment models under different assumptions,assessing the impacts of model mis-specification and evaluating management strategies.
基金supported financially by the National Science and Engineering Research Council of Canada(NSERC).
文摘We present an accelerated method for stochastically simulating the dynamics of heterogeneous cell populations.The algorithm combines a Monte Carlo approach for simulating the biochemical kinetics in single cells with a constant-number Monte Carlo method for simulating the reproductive fitness and the statistical characteristics of growing cell populations.To benchmark accuracy and performance,we compare simulation results with those generated from a previously validated population dynamics algorithm.The comparison demonstrates that the accelerated method accurately simulates population dynamics with significant reductions in runtime under commonly invoked steady-state and symmetric cell division assumptions.Considering the increasing complexity of cell population models,the method is an important addition to the arsenal of existing algorithms for simulating cellular and population dynamics that enables efficient,coarse-grained exploration of parameter space.
基金supported by National Genetically Modified Organisms Breeding Major Project:Technology of Environmental Risk Assessment on Transgenic Rice (Grant No. 2008ZX08011-001)
文摘The impacts of transgenic Bt rice on target pests and their predators need to be clarified prior to the commercialization of Bt rice.In this study,the percentages of folded leaves of three transgenic Bt rice lines and non-transgenic parental rice line caused by Cnaphalocrocis medinalis were studied over two successive growing seasons.In addition,the population densities,relative abundance and population dynamics of C.medinalis and four species of its natural arthropod predators were investigated at three sites in China.The results showed that rice line significantly affected the percentages of folded leaves and population densities of C.medinalis larvae.Significantly higher percentages of folded leaves were observed on the non-transgenic rice compared with the three transgenic Bt rice on most sampling dates.Significantly higher densities of C.medinalis larvae and higher relative abundance of C.medinalis within phytophages were found on non-transgenic rice compared with three transgenic Bt rice at different sites across the study period.The population dynamics of C.medinalis larvae were significantly affected by rice line,rice line×sampling date,rice line×year,rice line×sampling date×year.However,there was little,if any,significant difference in the relative abundance,population density and population dynamics of the four arthropod predators between the three Bt rice lines and non-transgenic rice.The results of this study indicate that the Bt toxin in transgenic Bt rice can effectively suppress the occurrence of C.medinalis,but has no significant effects on the occurrence of the four predatory arthropod species.
基金Supported by Shandong Provincial Natural Science Foundation,China(ZR2017MEE057)the Fundamental Research Funds for the Central Universities(14CX02207A,17CX05006,17CX06017)the Graduate Innovation Project of China University of Petroleum(East China)(YCX2017062)
文摘Dynamic modeling and numerical simulation of hydrate slurry flow behavior are of great importance to offshore hydrate management.For this purpose, a dynamic model of hydrate agglomeration was proposed in this paper.Based on population balance equation, the frame of the dynamic model was established first, which took both hydrate agglomeration and hydrate breakage into consideration.Then, the calculating methods of four key parameters involved in the dynamic model were given according to hydrate agglomeration dynamics.The four key parameters are collision frequency, agglomeration efficiency, breakage frequency and the size distribution of sub particles resulting from particle breakage.After the whole dynamic model was built, it was combined with several traditional solid–liquid flow models and then together solved by the CFD software FLUENT 14.5.Finally, using this method, the influences of flow rate and hydrate volume fraction on hydrate particle size distribution, hydrate volume concentration distribution and pipeline pressure drop were simulated and analyzed.