Root-associated microbes play an essentialrole in mediating plant growth,health,and habitat adaptability.However,it is unknown which microbial taxa help develop host fitness and how habitats shape root-associated micr...Root-associated microbes play an essentialrole in mediating plant growth,health,and habitat adaptability.However,it is unknown which microbial taxa help develop host fitness and how habitats shape root-associated microbial assembly patterns.As an endemic species of subalpine forests in western Sichuan,China,Minjiang fir(Abies fargesii var.faxoniana)is dominant on cold-shaded northwestern slopes while absent on warm sunlit southwestern slopes.In this study,fungal and bacterial communities were investigated in three spatial compartments(endosphere,rhizosphere,and bulk soil)associated with Minjiang fir saplings on a cold-shaded northwestern slope and a warm sunlit southwestern slope.Habitats differentiated the microbial communities regardless of the spatial compartment and microbial taxa.Slope aspect variations caused shifts in root-associated(rhizosphere and endosphere)microbial compositions.Compared with the southwestern slope,the cold-shaded northwestern slope harbored a higher abundance of the growth-promoting bacteria Burkholderia and ectomycorrhizal fungi Cortinarius and Piloderma.The slope aspect had stronger effects on fungal diversity than bacterial diversity,with higher fungal endemism and lower bacterial endemism.Slope aspect variations were the dominant drivers of root-associated microbial communities,with lower contribution by soil properties and higher contribution by plant traits on the northwestern slope.Findings from this study could improve the understanding of plant habitat adaptability from the perspective of microbial community assembly.It is suggested that forest management should consider root-associated microbiomes for enhancing species fitness and habitat adaptability.展开更多
To study the bioactive metabolites produced by sponge-derived uncultured symbionts, a metagenomic DNA library of the symbionts of sponge Gelliodes gracilis was constructed. The average size of DNA inserts in the libra...To study the bioactive metabolites produced by sponge-derived uncultured symbionts, a metagenomic DNA library of the symbionts of sponge Gelliodes gracilis was constructed. The average size of DNA inserts in the library was 20 kb. This library was screened for antibiotic activity using paper disc assaying. Two clones displayed the antibacterial activity against Micrococcus tetragenus. The metabolites of these two clones were analyzed through HPLC. The result showed that their metabolites were quite different from those of the host E. coli DNA and the host containing vector pHZ132. This study may present a new approach to exploring bioactive metabolites of sponge symbionts.展开更多
Marine biofouling has been regarded as a serious problem in the marine environment. The application of TBT and other heavy metal-based antifoulants has created another environmental problem. The present study explored...Marine biofouling has been regarded as a serious problem in the marine environment. The application of TBT and other heavy metal-based antifoulants has created another environmental problem. The present study explored the possible role of baterial symbionts of seagrasses Thalassia hemprichii, and Enhalus acoroides, which were successfully screened for antifouling activity against marine biofilm-forming bacteria isolated from the surrounding colonies of seagrasses. Bacterial symbionts were isolated and tested against biofilm-forming bacteria resulted in 4 bacterial symbionts capable of inhibiting the growth biofilm-forming isolates. Molecular identification based on 16S rRNA gene sequences revealed that the active bacterial symbionts belonged to the members of the genera Bacillus and Virgibacillus. Further tests of the crude extracts of the active bacterial symbionts supported the potential of these symbionts as the alternative source of environmentally friendly marine antifoulants.展开更多
The objective of this research was to improve the growth and biomass of Pterocarpus santalinus L.f.(an endangered leguminous tree)using native microbial symbionts such as arbuscular mycorrhizal fungi and Rhizobium ass...The objective of this research was to improve the growth and biomass of Pterocarpus santalinus L.f.(an endangered leguminous tree)using native microbial symbionts such as arbuscular mycorrhizal fungi and Rhizobium associated with native populations of P.santalinus.The native arbuscular mycorrhizal fungi isolated from P.santalinus soils were identifi ed as(1)Glomus fasciculatum;(2)Glomus geosporum;and Glomus aggregatum.A nitrogenfi xing microbial symbiont was isolated from the root nodules of P.santalinus and identifi ed as Rhizobium aegyptiacum by 16s rRNA gene sequencing.These microbial symbionts were inoculated individually and in combination into P.santalinus seedling roots.After 90 days,growth and biomass had improved compared with uninoculated controls.Shoot and root lengths,number of leaves,stem circumference,number of root nodules,biomass,nutrient uptake and seedling quality index were signifi cantly increased by a combined inoculation of arbuscular mycorrhizal fungi+Rhizobium aegyptiacum.It was concluded that native microbial symbionts positively infl uenced P.santalinus seedling growth which will be helpful for successful fi eld establishment.展开更多
The microbes associated with sponges play important roles in the nitrogen cycle of the coral reefs ecosystem,e.g.,nitrification,denitrification,and nitrogen fixation.However,the whole nitrogen-cycling network has rema...The microbes associated with sponges play important roles in the nitrogen cycle of the coral reefs ecosystem,e.g.,nitrification,denitrification,and nitrogen fixation.However,the whole nitrogen-cycling network has remained incomplete in any individual sponge holobiont.In this study,454 pyrosequencing of the 16S rRNA genes revealed that the sponge Spheciospongia vesparium from the South China Sea has a unique bacterial community(including 12 bacterial phyla),dominated particularly by the genus Shewanella(order Alteromonadales).A total of 10 functional genes,nifH,amoA,narG,napA,nirK,norB,nosZ,ureC,nrfA,and gltB,were detected in the microbiome of the sponge S.vesparium by gene-targeted analysis,revealing an almost complete nitrogen-cycling network in this sponge.Particularly,bacterial urea utilization and the whole denitrification pathway were highlighted.MEGAN analysis suggests that Proteobacteria(e.g.,Shewanella)and Bacteroidetes(e.g.,Bizionia)are probably involved in the nitrogen cycle in the sponge S.vesparium.展开更多
基金jointly funded by the National Key Research and Development Program of China (No.2021YFD2200405)the National Natural Science Foundation of China (No.31930078)。
文摘Root-associated microbes play an essentialrole in mediating plant growth,health,and habitat adaptability.However,it is unknown which microbial taxa help develop host fitness and how habitats shape root-associated microbial assembly patterns.As an endemic species of subalpine forests in western Sichuan,China,Minjiang fir(Abies fargesii var.faxoniana)is dominant on cold-shaded northwestern slopes while absent on warm sunlit southwestern slopes.In this study,fungal and bacterial communities were investigated in three spatial compartments(endosphere,rhizosphere,and bulk soil)associated with Minjiang fir saplings on a cold-shaded northwestern slope and a warm sunlit southwestern slope.Habitats differentiated the microbial communities regardless of the spatial compartment and microbial taxa.Slope aspect variations caused shifts in root-associated(rhizosphere and endosphere)microbial compositions.Compared with the southwestern slope,the cold-shaded northwestern slope harbored a higher abundance of the growth-promoting bacteria Burkholderia and ectomycorrhizal fungi Cortinarius and Piloderma.The slope aspect had stronger effects on fungal diversity than bacterial diversity,with higher fungal endemism and lower bacterial endemism.Slope aspect variations were the dominant drivers of root-associated microbial communities,with lower contribution by soil properties and higher contribution by plant traits on the northwestern slope.Findings from this study could improve the understanding of plant habitat adaptability from the perspective of microbial community assembly.It is suggested that forest management should consider root-associated microbiomes for enhancing species fitness and habitat adaptability.
基金This work was supported by High Tech R&D Program of China(Grant Nos.2002AA628130 and 2003AA624020)the National Natural Science Foundation of China(30171102)+2 种基金the Fund for Cheung Kong Scholar from the Cheung Kong Scholar Program of Ministry of Education of Chinathe Fund from the Natural Science Foundation of Shandong Province(No.Z2001C01)the High Tech R&D Program of Shandong Province(No.0121100107).The authors would like to thank Professor Li Jinhe of Institute of 0ceanology,Chinese Academy of Sciences,for the identification of the sponge.
文摘To study the bioactive metabolites produced by sponge-derived uncultured symbionts, a metagenomic DNA library of the symbionts of sponge Gelliodes gracilis was constructed. The average size of DNA inserts in the library was 20 kb. This library was screened for antibiotic activity using paper disc assaying. Two clones displayed the antibacterial activity against Micrococcus tetragenus. The metabolites of these two clones were analyzed through HPLC. The result showed that their metabolites were quite different from those of the host E. coli DNA and the host containing vector pHZ132. This study may present a new approach to exploring bioactive metabolites of sponge symbionts.
文摘Marine biofouling has been regarded as a serious problem in the marine environment. The application of TBT and other heavy metal-based antifoulants has created another environmental problem. The present study explored the possible role of baterial symbionts of seagrasses Thalassia hemprichii, and Enhalus acoroides, which were successfully screened for antifouling activity against marine biofilm-forming bacteria isolated from the surrounding colonies of seagrasses. Bacterial symbionts were isolated and tested against biofilm-forming bacteria resulted in 4 bacterial symbionts capable of inhibiting the growth biofilm-forming isolates. Molecular identification based on 16S rRNA gene sequences revealed that the active bacterial symbionts belonged to the members of the genera Bacillus and Virgibacillus. Further tests of the crude extracts of the active bacterial symbionts supported the potential of these symbionts as the alternative source of environmentally friendly marine antifoulants.
基金a research project(No.IFGTB/NFRP 168)of the Indian Council of Forestry Research and Education,Dehra Dun.
文摘The objective of this research was to improve the growth and biomass of Pterocarpus santalinus L.f.(an endangered leguminous tree)using native microbial symbionts such as arbuscular mycorrhizal fungi and Rhizobium associated with native populations of P.santalinus.The native arbuscular mycorrhizal fungi isolated from P.santalinus soils were identifi ed as(1)Glomus fasciculatum;(2)Glomus geosporum;and Glomus aggregatum.A nitrogenfi xing microbial symbiont was isolated from the root nodules of P.santalinus and identifi ed as Rhizobium aegyptiacum by 16s rRNA gene sequencing.These microbial symbionts were inoculated individually and in combination into P.santalinus seedling roots.After 90 days,growth and biomass had improved compared with uninoculated controls.Shoot and root lengths,number of leaves,stem circumference,number of root nodules,biomass,nutrient uptake and seedling quality index were signifi cantly increased by a combined inoculation of arbuscular mycorrhizal fungi+Rhizobium aegyptiacum.It was concluded that native microbial symbionts positively infl uenced P.santalinus seedling growth which will be helpful for successful fi eld establishment.
基金Financial support from the National Natural Science Foundation of China(NSFC)(Nos.31861143020,41776138)was used to conduct this research and is greatly appreciated.
文摘The microbes associated with sponges play important roles in the nitrogen cycle of the coral reefs ecosystem,e.g.,nitrification,denitrification,and nitrogen fixation.However,the whole nitrogen-cycling network has remained incomplete in any individual sponge holobiont.In this study,454 pyrosequencing of the 16S rRNA genes revealed that the sponge Spheciospongia vesparium from the South China Sea has a unique bacterial community(including 12 bacterial phyla),dominated particularly by the genus Shewanella(order Alteromonadales).A total of 10 functional genes,nifH,amoA,narG,napA,nirK,norB,nosZ,ureC,nrfA,and gltB,were detected in the microbiome of the sponge S.vesparium by gene-targeted analysis,revealing an almost complete nitrogen-cycling network in this sponge.Particularly,bacterial urea utilization and the whole denitrification pathway were highlighted.MEGAN analysis suggests that Proteobacteria(e.g.,Shewanella)and Bacteroidetes(e.g.,Bizionia)are probably involved in the nitrogen cycle in the sponge S.vesparium.
