Detection of sulfur-oxidizing bacteria has largely been dependent on targeted gene sequencing technology or traditional cell cultivation, which usually takes from days to months to carry out. This clearly does not mee...Detection of sulfur-oxidizing bacteria has largely been dependent on targeted gene sequencing technology or traditional cell cultivation, which usually takes from days to months to carry out. This clearly does not meet the requirements of analysis for time-sensitive samples and/or complicated environmental samples. Since energy-dispersive X-ray spectrometry(EDS) can be used to simultaneously detect multiple elements in a sample, including sulfur, with minimal sample treatment, this technology was applied to detect sulfur-oxidizing bacteria using their high sulfur content within the cell. This article describes the application of scanning electron microscopy imaging coupled with EDS mapping for quick detection of sulfur oxidizers in contaminated environmental water samples, with minimal sample handling. Scanning electron microscopy imaging revealed the existence of dense granules within the bacterial cells, while EDS identified large amounts of sulfur within them. EDS mapping localized the sulfur to these granules. Subsequent 16S rRNA gene sequencing showed that the bacteria detected in our samples belonged to the genus Chromatium, which are sulfur oxidizers. Thus, EDS mapping made it possible to identify sulfur oxidizers in environmental samples based on localized sulfur within their cells, within a short time(within 24 h of sampling). This technique has wide ranging applications for detection of sulfur bacteria in environmental water samples.展开更多
The physiology and ecology of planktonic organisms are influenced by the concentration, chemical speciation and resulting bioavailability of some trace metals. The determination of the elemental structure of phytoplan...The physiology and ecology of planktonic organisms are influenced by the concentration, chemical speciation and resulting bioavailability of some trace metals. The determination of the elemental structure of phytoplankton is important for interpretation of physiological and functional states of coastal ecosystems. The present study is focused on the structure and elemental composition of the phytoplankton assemblages from the different coastal zones by instrumental neutron activation analysis (INAA), scanning electron microscopy (SEM) and energy-dispersive X-ray spectrometry (EDS). For the first time these complementary techniques were simultaneously applied to study the Black Sea phytoplankton. The concentrations of 45 elements in the coastal phytoplankton communities used as bioindicator of inorganic contamination of the Black Sea coastal area near Sevastopol, Ukraine, were determined. Phytoplankton samples were collected by total tows of the plankton net with 35 μm pore size at 3 stations situated in polluted and relatively pristine water areas of the Sevastopol coastal zone during autumn period of the phytoplankton growth. The concentration of Mg, Al, Sc, Ti, V, Mn, As, Rb, Ba, Th and Fe, Cr increases exponentially from relatively pristine station to more polluted station and 10-times and 3-times greater, respectively, in the phytoplankton of the Sevastopol Bay. The rare-earth elements have relatively the same concentration values less than 1 μg/g and tend to accumulate in the phytoplankton from the polluted station in the Sevastopol Bay. The obtained results are in a good agreement with the elemental concentration data in the oceanic plankton, plankton communities from the White Sea and the Black Sea. Using energy-dispersive X-ray spectrometry the mineral particles of unknown origin and impurities of copper (0.42% by weight) in the phytoplankton at the polluted station and zinc (0.57% by weight) at the relatively pristine station were determined.展开更多
Electron microscopy has long been used in research in the fields of life sciences and materials sciences.Transmission and scanning electron microscopy and energy-dispersive X-ray spectroscopy(EDX)analyses have also be...Electron microscopy has long been used in research in the fields of life sciences and materials sciences.Transmission and scanning electron microscopy and energy-dispersive X-ray spectroscopy(EDX)analyses have also been performed in the field of gastroenterology.Electron microscopy and EDX enable(1)Observation of ultrastructural differences in esophageal epithelial cells in patients with gastroesophageal reflux and eosinophilic esophagitis;(2)Detection of lanthanum deposition in the stomach and duodenum;(3)Ultrastructural and elemental analyses of enteroliths and bezoars;(4)Detection and characterization of microorganisms in the gastrointestinal tract;(5)Diagnosis of gastrointestinal tumors with neuroendocrine differentiation;and(6)Analysis of gold nanoparticles potentially used in endoscopic photodynamic therapy.This review aims to foster a better understanding of electron microscopy applications by reviewing relevant clinical studies,basic research findings,and the state of current research carried out in gastroenterology science.展开更多
The study of the mineral and organic content of the Allende meteorite is important for our understanding of the molecular evolution of the universe as well as the ancient Earth. Previous studies have characterized the...The study of the mineral and organic content of the Allende meteorite is important for our understanding of the molecular evolution of the universe as well as the ancient Earth. Previous studies have characterized the magnetic minerals present in ordinary and carbonaceous chondrites, providing information on the evolution of magnetic fields. The interaction of organic compounds with magnetic minerals is a possible source of chemical diversity, which is crucial for molecular evolution. Carbon compounds in meteorites are of great scientific interest for a variety of reasons, such as their relevance to the origins of chirality in living organisms. This study presents the characterization of organic and mineral compounds in the Allende meteorite. The structural and physicochemical characterization of the Allende meteorite was accomplished through light microscopy, powder X-ray diffraction with complementary Rietveld refinement, Raman and infrared spectroscopy, mass spectrometry, scanning electron microscopy, and atomic force microscopy using magnetic signal methods to determine the complex structure and the interaction of organic compounds with magnetic Ni-Fe minerals. The presence of Liesegang-like patterns of chondrules in fragments of the Allende structure may also be relevant to understanding how the meteorite was formed. Other observations include the presence of magnetic materials and nanorod-like solids with relatively similar sizes as well as the heterogeneous distribution of carbon in chondrules. Signals observed in the Raman and infrared spectra resemble organic compounds such as carbon nanotubes and peptide-like molecules that have been previously reported in other meteorites, making the Mexican Allende meteorite a feasible sample for the study of the early Earth and exoplanetary bodies.展开更多
基金Supported by the Basic Scientific Fund for National Public Research Institutes of China(Nos.GY02-2011T10,2015P07)the Qingdao Talent Program(No.13-CX-20)+1 种基金the National Natural Science Foundation of China(Nos.31100567,41176061)the National Natural Science Foundation for Creative Groups(No.41521064)
文摘Detection of sulfur-oxidizing bacteria has largely been dependent on targeted gene sequencing technology or traditional cell cultivation, which usually takes from days to months to carry out. This clearly does not meet the requirements of analysis for time-sensitive samples and/or complicated environmental samples. Since energy-dispersive X-ray spectrometry(EDS) can be used to simultaneously detect multiple elements in a sample, including sulfur, with minimal sample treatment, this technology was applied to detect sulfur-oxidizing bacteria using their high sulfur content within the cell. This article describes the application of scanning electron microscopy imaging coupled with EDS mapping for quick detection of sulfur oxidizers in contaminated environmental water samples, with minimal sample handling. Scanning electron microscopy imaging revealed the existence of dense granules within the bacterial cells, while EDS identified large amounts of sulfur within them. EDS mapping localized the sulfur to these granules. Subsequent 16S rRNA gene sequencing showed that the bacteria detected in our samples belonged to the genus Chromatium, which are sulfur oxidizers. Thus, EDS mapping made it possible to identify sulfur oxidizers in environmental samples based on localized sulfur within their cells, within a short time(within 24 h of sampling). This technique has wide ranging applications for detection of sulfur bacteria in environmental water samples.
文摘The physiology and ecology of planktonic organisms are influenced by the concentration, chemical speciation and resulting bioavailability of some trace metals. The determination of the elemental structure of phytoplankton is important for interpretation of physiological and functional states of coastal ecosystems. The present study is focused on the structure and elemental composition of the phytoplankton assemblages from the different coastal zones by instrumental neutron activation analysis (INAA), scanning electron microscopy (SEM) and energy-dispersive X-ray spectrometry (EDS). For the first time these complementary techniques were simultaneously applied to study the Black Sea phytoplankton. The concentrations of 45 elements in the coastal phytoplankton communities used as bioindicator of inorganic contamination of the Black Sea coastal area near Sevastopol, Ukraine, were determined. Phytoplankton samples were collected by total tows of the plankton net with 35 μm pore size at 3 stations situated in polluted and relatively pristine water areas of the Sevastopol coastal zone during autumn period of the phytoplankton growth. The concentration of Mg, Al, Sc, Ti, V, Mn, As, Rb, Ba, Th and Fe, Cr increases exponentially from relatively pristine station to more polluted station and 10-times and 3-times greater, respectively, in the phytoplankton of the Sevastopol Bay. The rare-earth elements have relatively the same concentration values less than 1 μg/g and tend to accumulate in the phytoplankton from the polluted station in the Sevastopol Bay. The obtained results are in a good agreement with the elemental concentration data in the oceanic plankton, plankton communities from the White Sea and the Black Sea. Using energy-dispersive X-ray spectrometry the mineral particles of unknown origin and impurities of copper (0.42% by weight) in the phytoplankton at the polluted station and zinc (0.57% by weight) at the relatively pristine station were determined.
文摘Electron microscopy has long been used in research in the fields of life sciences and materials sciences.Transmission and scanning electron microscopy and energy-dispersive X-ray spectroscopy(EDX)analyses have also been performed in the field of gastroenterology.Electron microscopy and EDX enable(1)Observation of ultrastructural differences in esophageal epithelial cells in patients with gastroesophageal reflux and eosinophilic esophagitis;(2)Detection of lanthanum deposition in the stomach and duodenum;(3)Ultrastructural and elemental analyses of enteroliths and bezoars;(4)Detection and characterization of microorganisms in the gastrointestinal tract;(5)Diagnosis of gastrointestinal tumors with neuroendocrine differentiation;and(6)Analysis of gold nanoparticles potentially used in endoscopic photodynamic therapy.This review aims to foster a better understanding of electron microscopy applications by reviewing relevant clinical studies,basic research findings,and the state of current research carried out in gastroenterology science.
文摘The study of the mineral and organic content of the Allende meteorite is important for our understanding of the molecular evolution of the universe as well as the ancient Earth. Previous studies have characterized the magnetic minerals present in ordinary and carbonaceous chondrites, providing information on the evolution of magnetic fields. The interaction of organic compounds with magnetic minerals is a possible source of chemical diversity, which is crucial for molecular evolution. Carbon compounds in meteorites are of great scientific interest for a variety of reasons, such as their relevance to the origins of chirality in living organisms. This study presents the characterization of organic and mineral compounds in the Allende meteorite. The structural and physicochemical characterization of the Allende meteorite was accomplished through light microscopy, powder X-ray diffraction with complementary Rietveld refinement, Raman and infrared spectroscopy, mass spectrometry, scanning electron microscopy, and atomic force microscopy using magnetic signal methods to determine the complex structure and the interaction of organic compounds with magnetic Ni-Fe minerals. The presence of Liesegang-like patterns of chondrules in fragments of the Allende structure may also be relevant to understanding how the meteorite was formed. Other observations include the presence of magnetic materials and nanorod-like solids with relatively similar sizes as well as the heterogeneous distribution of carbon in chondrules. Signals observed in the Raman and infrared spectra resemble organic compounds such as carbon nanotubes and peptide-like molecules that have been previously reported in other meteorites, making the Mexican Allende meteorite a feasible sample for the study of the early Earth and exoplanetary bodies.
