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重庆南川区道地药材玄参遗传多样性ISSR分析 被引量:3
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作者 马腾蛟 陈杰 +2 位作者 丁显平 陈泓翰 包善飞 《四川大学学报(自然科学版)》 CAS CSCD 北大核心 2016年第5期1119-1124,共6页
本研究利用ISSR—PCR分子标记技术分析研究了重庆市南川区五个地方人工种植玄参的遗传多样性,利用7条UBC引物共扩增出了61条DNA片段,其中多态性片段为48条.片段长度约为250~2000bp,每条引物扩增出的DNA片段数为4~14条.同时采用NT... 本研究利用ISSR—PCR分子标记技术分析研究了重庆市南川区五个地方人工种植玄参的遗传多样性,利用7条UBC引物共扩增出了61条DNA片段,其中多态性片段为48条.片段长度约为250~2000bp,每条引物扩增出的DNA片段数为4~14条.同时采用NTSYS_pc2.1软件计算出五个区域之间和区域内部子区域的玄参的Nei’S遗传距离,并用UPGMA法分别构建了系统树.结果表明五个地方人工种植玄参存在一定的遗传多态性,但其地方之间差异并不明显,其遗传多样性主要在同一地方内的子区域间被观察到. 展开更多
关键词 玄参 种植中药材 ISSR 遗传多样性
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基于转录组测序的温带臭虫SSR和SNP位点分析 被引量:10
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作者 李敏 王青 +2 位作者 陈晨 付艺杰 石太瑞 《山西农业大学学报(自然科学版)》 CAS 北大核心 2019年第4期52-57,共6页
[目的]温带臭虫( Cimex lectularius )是世界性分布的吸血性寄生虫,主要靠吸食人血为生。探究温带臭虫转录组SSR和SNP分布规律,可为后期温带臭虫的SSR和SNP分子标记开发、遗传多样性分析以及遗传图谱构建等研究奠定基础。[方法]以转录... [目的]温带臭虫( Cimex lectularius )是世界性分布的吸血性寄生虫,主要靠吸食人血为生。探究温带臭虫转录组SSR和SNP分布规律,可为后期温带臭虫的SSR和SNP分子标记开发、遗传多样性分析以及遗传图谱构建等研究奠定基础。[方法]以转录组数据为基础,利用软件msatcommander v0.8.2和SOAPsnp v1.03系统分析了SSR 和SNP 位点多态性和分布特征。[结果]温带臭虫转录组数据的25 468条unigene中含有4 758个SSR位点,分布在4 171 unigene序列中。其中单核苷酸重复的次数最多,共有2 795个,占总数的58.74%,其次是三核苷酸重复和二核苷酸重复分别是984个(20.68%)和764个(16.06%),四核苷酸重复有195个(4.10%),而五、六核苷酸重复最少,仅出现20次(0.42%)。在温带臭虫的SSR位点中,共出现30个重复基元,其中优势的重复基元类型是A/T,共有 2 757 个,其次是AT/AT,有474个,ATT/AAT有342个。在25 468个unigene中共发现76 562个simple SNPs,其中转换类型46 634个,占60.91%,颠换类型29 928个,占39.09%。碱基转换类型比例高于颠换类型。6种单碱基变异类型中,C-T发生频率最高,比例为30.69%,其次为A-G,比例为30.22%。[结论]温带臭虫转录组中SSR和SNP位点数量多,出现频率高,且类型丰富。 展开更多
关键词 温带臭虫 转录组 微卫星 单核苷酸多态性
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Quantitative Trait Loci Mapping of Leaf Morphological Traits and Chlorophyll Content in Cultivated Tetraploid Cotton 被引量:13
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作者 Xian-Liang SONG Wang-Zhen GUO +1 位作者 Zhi-Guo HAN Tian-Zhen ZHANG 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2005年第11期1382-1390,共9页
Genetic mapping provides a powerful tool for quantitative trait loci (QTL) analysis at the molecular level. A simple sequence repeat (SSR) genetic map containing 590 markers and a BCI population from two cultivate... Genetic mapping provides a powerful tool for quantitative trait loci (QTL) analysis at the molecular level. A simple sequence repeat (SSR) genetic map containing 590 markers and a BCI population from two cultivated tetraploid cotton (Gossypium hirsutum L.) cultivars, namely TM-1 and Hai 7124 (G. barbadense L.), were used to map and analyze QTL using the composite interval mapping (CIM) method. Thirty one QTLs, 10 for lobe length, 13 for lobe width, six for lobe angle, and two for leaf chlorophyll content, were detected on 15 chromosomes or linkage groups at logarithm of odds (LOD)≥2.0, of which 15 were found for leaf morphology at LOD≥3.0. The genetic effects of the QTL were estimated. These results are fundamental for marker-assisted selection (MAS) of these traits in tetraploid cotton breeding. 展开更多
关键词 CHLOROPHYLL COTTON leaf morphology quantitative trait locus mapping simple sequencerepeat.
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Development, identification and utilization of introgression lines using Chinese endemic and synthetic wheat as donors 被引量:2
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作者 Liqing Gu Bo Wei +3 位作者 Renchun Fan Xu Jia Xianping Wang Xiangqi Zhang 《Journal of Integrative Plant Biology》 SCIE CAS CSCD 2015年第8期688-697,共10页
Chromosome segmental introgression lines(ILs)are an effective way to utilize germplasm resources in crops.To improve agronomic traits of wheat cultivar(Triticum aestivum) Shi 4185, four sets of ILs were developed.... Chromosome segmental introgression lines(ILs)are an effective way to utilize germplasm resources in crops.To improve agronomic traits of wheat cultivar(Triticum aestivum) Shi 4185, four sets of ILs were developed. The donors were Chinese endemic subspecies accessions Yunnan wheat(T. aestivum ssp. yunnanense) YN3, Tibetan semiwild wheat(T. aestivum ssp. tibetanum) XZ-ZM19450, and Xinjiang wheat(T. aestivum ssp. petropavlovskyi) XJ5, and synthetic wheat HC-XM1620 derived from a cross between T. durum acc. D67.2/P66.270 with Aegilops tauschii acc. 218.Totals of 356, 366, 445 and 457 simple sequence repeat(SSR)markers were polymorphic between Shi 4185 and YN3, XZZM19450, XJ5 and HC-XM1620, respectively. In total, 991 ILs were identified, including 300 derived from YN3, covering 95%of the genome of Shi 4185, 218 from XZ-ZM19450(79%), 279 from XJ5(97%), and 194 from HC-ZX1620(84%). The sizes and locations of each introgression were determined from a consensus SSR linkage map. Using the ILs, 11 putative Resear quantitative trait loci(QTLs) were identified for plant height(PH), spike length(SL) and grain number per spike(GNS).Comparative analyses of 24 elite ILs with the parents revealed that the four donor parents could be important resources to improve wheat SL and GNS. Our work offers a case for utilizing endemic landraces for QTL mapping and improvement of wheat cultivars using introgression lines. 展开更多
关键词 Chromosome segmental introgression lines commonwheat molecular breeding quantitative trait locus simple sequencerepeat marker
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