BACKGROUND Colorectal cancer has a low 5-year survival rate and high mortality.Humanβ-defensin-1(hBD-1)may play an integral function in the innate immune system,contributing to the recognition and destruction of canc...BACKGROUND Colorectal cancer has a low 5-year survival rate and high mortality.Humanβ-defensin-1(hBD-1)may play an integral function in the innate immune system,contributing to the recognition and destruction of cancer cells.Long non-coding RNAs(lncRNAs)are involved in the process of cell differentiation and growth.AIM To investigate the effect of hBD-1 on the mammalian target of rapamycin(mTOR)pathway and autophagy in human colon cancer SW620 cells.METHODS CCK8 assay was utilized for the detection of cell proliferation and determination of the optimal drug concentration.Colony formation assay was employed to assess the effect of hBD-1 on SW620 cell proliferation.Bioinformatics was used to screen potentially biologically significant lncRNAs related to the mTOR pathway.Additionally,p-mTOR(Ser2448),Beclin1,and LC3II/I expression levels in SW620 cells were assessed through Western blot analysis.RESULTS hBD-1 inhibited the proliferative ability of SW620 cells,as evidenced by the reduction in the colony formation capacity of SW620 cells upon exposure to hBD-1.hBD-1 decreased the expression of p-mTOR(Ser2448)protein and increased the expression of Beclin1 and LC3II/I protein.Furthermore,bioinformatics analysis identified seven lncRNAs(2 upregulated and 5 downregulated)related to the mTOR pathway.The lncRNA TCONS_00014506 was ultimately selected.Following the inhibition of the lncRNA TCONS_00014506,exposure to hBD-1 inhibited p-mTOR(Ser2448)and promoted Beclin1 and LC3II/I protein expression.CONCLUSION hBD-1 inhibits the mTOR pathway and promotes autophagy by upregulating the expression of the lncRNA TCONS_00014506 in SW620 cells.展开更多
Background:JUNO and IZUMO1 are the first receptor-ligand protein pairs discovered to be essential for spermoocyte fusion;their interaction is indispensable for fertilization.Methods:PCR was used to clone the full-leng...Background:JUNO and IZUMO1 are the first receptor-ligand protein pairs discovered to be essential for spermoocyte fusion;their interaction is indispensable for fertilization.Methods:PCR was used to clone the full-length DNA sequence of the Juno gene in sheep.The single nucleotide polymorphism(SNP)loci of Juno were genotyped by Sequenom MassARRAY®.PCR combined with rapid amplification of cDNA Ends were used to clone the full-length cDNA sequence of Juno and Izumo1.Reverse transcriptase-PCR(RT-PCR)and real time-quantitative-PCR(RT-qPCR)were used to analyze the genes’expression in tissues of sheep,and single cell RNA-seq was used to analyze the genes’expression in oocytes,granulosa cells and follicular theca of polytocous and monotocous Small Tail Han ewes.Bioinformatics was used to analyze advanced structure and phylogeny of JUNO and IZUMO1 proteins.Results:The full-length DNA sequence of the Juno gene in sheep was cloned and nine SNPs were screened.We found a significant association between the g.848253 C>A locus of Juno and litter size of Small Tail Han sheep(P<0.05).The full-length cDNA sequence of Juno and Izumo1 genes from Small Tail Han sheep were obtained.We found a new segment of the Izumo1 CDS consisting of 35 bp,and we confirmed the Izumo1 gene has 9 exons,not 8.RT-qPCR showed that Juno and Izumo1 genes were highly expressed in ovarian and testicular tissues,respectively(P<0.01).Single cell RNA-seq showed Juno was specifically expressed in oocytes,but not in granulosa cells or follicular theca,while Izumo1 displayed little to no expression in all three cell types.There was no difference in expression of the Juno gene in oocyte and ovarian tissue in sheep with different litter sizes,indicating expression of Juno is not related to litter size traits.Bioinformatic analysis revealed the g.848253 C>A locus of Juno results in a nonconservative missense point mutation leading to a change from Phe to Leu at position 219 in the amino acid sequence.Conclusions:For the first time,this study systematically analyzed the expression,structure and function of Juno and Izumo1 genes and their encoded proteins in Small Tail Han sheep,providing the basis for future studies of the regulatory mechanisms of Juno and Izumo1 genes.展开更多
A single nucleotide polymorphism (SNP) of 805 bp region in the intron 6 of transfor- ming growth factor β1 (TGF-fll) gene was identified by polymerase chain reaction-single-strand composi- tion polymorphism (PCR...A single nucleotide polymorphism (SNP) of 805 bp region in the intron 6 of transfor- ming growth factor β1 (TGF-fll) gene was identified by polymerase chain reaction-single-strand composi- tion polymorphism (PCR-SSCP) in 196 sheep among Small-tailed Han sheep, Tong sheep, Tan sheep and Oula sheep. Comparative sequence analysis of cloned products revealed an AGAC deletion at 294 bases up-stream of exon 7 of the TGF-βI gene ( site 14201 in gi76871756). Statistical results of the genotype and allele frequencies in different breeds showed that gen- otype AB was dominant in the Small-tailed Han sheep. Genotype BB, however, was in majority in low- fecundity sheep. The results of a Chi-square test indi- cated that all the populations were in Hardy-Weinberg equilibrium.展开更多
The present study was designed to determine the relationship between changes of plasma endothelin 1 concentrations and development of colonic obstruction in sleep.Colons were bound in three sheep with sterilized plas...The present study was designed to determine the relationship between changes of plasma endothelin 1 concentrations and development of colonic obstruction in sleep.Colons were bound in three sheep with sterilized plastic tubes to make pathological model of colonic obstruction.Samples were collected before and after modeling operation on both controls and models.Endothelin 1 concentrations were measured by radioimmunoassay.Plasma ET llevels decreased continually after the modeling operation in the models,it dropped from a basal value of 60 93±18 66 to 34 11±8 22 and 33 54±11 12 pg/mL(P<0 05) on the 3rd and 5 th day,respectively,which were also lower than controls 64 16±12 93 pg/mL(P<0 05).It suggests that colonic obstruction may induce a decrease in plasma endothelin 1 concentrations in sleep.展开更多
In this study, using Liangshan semi-fine wool sheep as an experimental material, full-length CDS sequence of IGFBP-1 gene was cloned with RT-PCR method and analyzed with bioinformatics methods. The results showed that...In this study, using Liangshan semi-fine wool sheep as an experimental material, full-length CDS sequence of IGFBP-1 gene was cloned with RT-PCR method and analyzed with bioinformatics methods. The results showed that the full-length CDS sequence of IGFBP-1 gene in Liangshan semi-fine wool sheep was 792 bp in length, encoding 263 amino acids. The CDS sequence shared 97%, 76% and 74% homology with bovine, human and rat, respectively; the amino acid sequence shared 97% , 69% and 71%, respectively. The GenBank accession number was FJ589639.1. The amino acid molecular weight of IGFBP-1 was 27.8 kD, and the theoretical isoelectric point (pl) was 5.99. The result of phylogenetic analysis showed that IGFBP-1 gene in Liangshan semi-fine wool sheep exhibited close phylogenetic relationships with bovine, goat and other mammals, and distant phylogenetic relationships with chicken and fish. IGFBP-1 gene had obvious hy- drophobic and hydrophilic regions, harboring one signal peptide, one transmembrane region, 16 phosphorylation sites, six N-glycesylation sites and eight O-glycosy- lation sites. The result of secondary structure analysis showed that the random coil, a-helix and 13-sheet regions accounted for 61.98%, 24.33% and 13.69%, re- spectively. The result of tertiary structure analysis showed that IGFBP-1 harbors an IGFBP_N domain and a thyrnglobulin type-1 domain. This study laid a solid foundation for further investigating the function of IGFBP-1 gene in sheep.展开更多
Spermatogonial stem cells(SSCs) are unique stem cells in adult body that can transmit genetic information to the next generation. They have self-renewal potential and can continuously support spermatogenesis through...Spermatogonial stem cells(SSCs) are unique stem cells in adult body that can transmit genetic information to the next generation. They have self-renewal potential and can continuously support spermatogenesis throughout life of a male animal. However, the SSC population is extremely small, isolation and purification of the SSCs is challenging, especially for livestock animals. It has been confirmed that CDH1(cadherin-1, also known as E-cadherin) can be expressed in undifferentiated SSCs of mouse and rats, but it has not been verified in sheep. Here, CDH1 was found as a novel surface marker for sheep SSCs. In this paper, sheep antiCDH1 polyclonal antibodies were prepared and its activity was checked. Using the obtained antibodies and immunohistochemistry analysis, we confirmed that CDH1 can be expressed by SSCs in sheep testis.展开更多
It reveals that the MHC (major histocompatibility complex) gene product always involved in the control of immune response and disease resistance. Nowadays many studies have indicated the OLA (ovine lymphocyte anti...It reveals that the MHC (major histocompatibility complex) gene product always involved in the control of immune response and disease resistance. Nowadays many studies have indicated the OLA (ovine lymphocyte antigen) DRB1 gene is associated with some sheep diseases. Tibetan sheep is one of the three major shag sheep breeds in China, and also have the largest number of China's sheep breeds. But till now no report has been seen on studying DRB1 gene in Tibetan sheep of China. To understand the evolution and provide the basis for sheep disease resistance, polymorphism in the exon2 ofDRB1 gene in Tibetan sheep was analyzed. The PCR-SSCP, cloning and sequencing were used to analyse DRB1 gene variation in 600 Tibetan sheep of China. And the genetic relationship and evolutionary significance of the alleles had also been analyzed. Total of 31 alleles were identified, in which 15 alleles had not been reported before. And there were 70 SNPs (single nucleotide polymorphisms) sites in 31 sheep DRB1 gene haplotypes, the proportion was 29.5% to the whole exort2 sequence. All of this indicated that DRB1 exon2 is highly polymorphic in Tibetan sheep. The variation identified here might have an impact on both the function and level of expression of the OLA-DRB1.展开更多
本研究旨在探讨不同蛋白质水平日粮对绵羊胰岛素样生长因子-1(IGF-1)和生长激素(GH)分泌及基因mRNA表达量的影响,为科学配置肉羊饲料及研究肉羊生长发育提供基础。选择6月龄体重相近的多胎萨福克公羔18只,随机分为3组,分别饲喂不同蛋白...本研究旨在探讨不同蛋白质水平日粮对绵羊胰岛素样生长因子-1(IGF-1)和生长激素(GH)分泌及基因mRNA表达量的影响,为科学配置肉羊饲料及研究肉羊生长发育提供基础。选择6月龄体重相近的多胎萨福克公羔18只,随机分为3组,分别饲喂不同蛋白质水平的日粮(低蛋白日粮、中蛋白日粮和高蛋白日粮)。采用ELISA方法和SYBR Green Real-time PCR方法检测日粮不同蛋白质水平对不同生长发育阶段(30、60、90和120d)羔羊外周血中IGF-1、GH浓度和皮肤组织中基因表达的影响。结果显示,日粮蛋白质水平显著影响绵羊平均日增重、外周血中IGF-1和GH的浓度以及皮肤组织IGF-1基因的表达丰度,而未显著影响GH基因的表达丰度。结果提示,随着日粮蛋白质水平的升高,绵羊生长发育快,外周血中IGF-1浓度增加,GH浓度降低,IGF-1基因表达量增加。展开更多
【目的】检测两个绵羊群体中解偶联蛋白1(uncoupling protein 1,UCP1)基因的单核苷酸多态性(single nucleotide polymorphism,SNP),预测和分析碱基改变对蛋白结构和功能的影响。【方法】利用PCR-SSCP结合测序的方法检测UCP1基因编码区的...【目的】检测两个绵羊群体中解偶联蛋白1(uncoupling protein 1,UCP1)基因的单核苷酸多态性(single nucleotide polymorphism,SNP),预测和分析碱基改变对蛋白结构和功能的影响。【方法】利用PCR-SSCP结合测序的方法检测UCP1基因编码区的SNPs,用生物信息学方法分析UCP1蛋白的理化性质和结构。【结果】UCP1基因编码区存在4个SNPs,其中c.214G>A(Val72Met)和c.273C>T位于外显子2,c.624C>T和c.757G>A(Ala253Thr)位于外显子5。进一步分析导致氨基酸改变的c.214G>A和c.757 G>A突变发现,此两个突变只对UCP1蛋白的理化性质和转录因子结合位点有细微改变,未引起UCP1蛋白空间构象的变化,对蛋白表达的影响不大。【结论】基于对人类中两个与肥胖相关的外显子突变型蛋白结构的比较说明,UCP1蛋白结构的改变可能影响其功能。展开更多
本研究以湖羊肝脏为材料对肝受体类似物-1(Liver receptor homolog-1,Lrh-1;NR5A2)基因序列进行RT-PCR和RACE测定,并用DNAman、Tmpred、Signal P 3.0、Expasy等生物信息学分析软件和在线工具,对Lrh-1cDNA序列及其蛋白的理化特性、跨膜...本研究以湖羊肝脏为材料对肝受体类似物-1(Liver receptor homolog-1,Lrh-1;NR5A2)基因序列进行RT-PCR和RACE测定,并用DNAman、Tmpred、Signal P 3.0、Expasy等生物信息学分析软件和在线工具,对Lrh-1cDNA序列及其蛋白的理化特性、跨膜结构、信号肽和二级结构进行生物信息学分析,同时采用实时荧光定量PCR方法检测湖羊Lrh-1基因的组织表达谱。结果表明,湖羊Lrh-1基因cDNA序列全长1 488bp,与牛的核酸序列相似度最高,为98%,编码区共编码495个氨基酸,氨基酸序列与牛、人、马、猴、犬、小鼠、褐鼠的氨基酸同源性分别为98%、97%、96%、97%、97%、86%和86%;Lrh-1mRNA在湖羊脑、消化及生殖系统组织中均有表达且具有组织特异性,其中在下丘脑组织中的表达量相对最高。展开更多
基金Supported by National Natural Science Foundation of China,No.82360329Inner Mongolia Medical University General Project,No.YKD2023MS047Inner Mongolia Health Commission Science and Technology Plan Project,No.202201275.
文摘BACKGROUND Colorectal cancer has a low 5-year survival rate and high mortality.Humanβ-defensin-1(hBD-1)may play an integral function in the innate immune system,contributing to the recognition and destruction of cancer cells.Long non-coding RNAs(lncRNAs)are involved in the process of cell differentiation and growth.AIM To investigate the effect of hBD-1 on the mammalian target of rapamycin(mTOR)pathway and autophagy in human colon cancer SW620 cells.METHODS CCK8 assay was utilized for the detection of cell proliferation and determination of the optimal drug concentration.Colony formation assay was employed to assess the effect of hBD-1 on SW620 cell proliferation.Bioinformatics was used to screen potentially biologically significant lncRNAs related to the mTOR pathway.Additionally,p-mTOR(Ser2448),Beclin1,and LC3II/I expression levels in SW620 cells were assessed through Western blot analysis.RESULTS hBD-1 inhibited the proliferative ability of SW620 cells,as evidenced by the reduction in the colony formation capacity of SW620 cells upon exposure to hBD-1.hBD-1 decreased the expression of p-mTOR(Ser2448)protein and increased the expression of Beclin1 and LC3II/I protein.Furthermore,bioinformatics analysis identified seven lncRNAs(2 upregulated and 5 downregulated)related to the mTOR pathway.The lncRNA TCONS_00014506 was ultimately selected.Following the inhibition of the lncRNA TCONS_00014506,exposure to hBD-1 inhibited p-mTOR(Ser2448)and promoted Beclin1 and LC3II/I protein expression.CONCLUSION hBD-1 inhibits the mTOR pathway and promotes autophagy by upregulating the expression of the lncRNA TCONS_00014506 in SW620 cells.
基金This research was funded by National Natural Science Foundation of China,grant number 31501941Central Public-interest Scientific Institution Basal Research Fund,grant number 2018-YWF-YB-1,and 2015ywf-zd-2+1 种基金the Earmarked Fund for China Agriculture Research System,grant number CARS-38the Agricultural Science and Technology Innovation Program of China,grant number ASTIP-IAS13.
文摘Background:JUNO and IZUMO1 are the first receptor-ligand protein pairs discovered to be essential for spermoocyte fusion;their interaction is indispensable for fertilization.Methods:PCR was used to clone the full-length DNA sequence of the Juno gene in sheep.The single nucleotide polymorphism(SNP)loci of Juno were genotyped by Sequenom MassARRAY®.PCR combined with rapid amplification of cDNA Ends were used to clone the full-length cDNA sequence of Juno and Izumo1.Reverse transcriptase-PCR(RT-PCR)and real time-quantitative-PCR(RT-qPCR)were used to analyze the genes’expression in tissues of sheep,and single cell RNA-seq was used to analyze the genes’expression in oocytes,granulosa cells and follicular theca of polytocous and monotocous Small Tail Han ewes.Bioinformatics was used to analyze advanced structure and phylogeny of JUNO and IZUMO1 proteins.Results:The full-length DNA sequence of the Juno gene in sheep was cloned and nine SNPs were screened.We found a significant association between the g.848253 C>A locus of Juno and litter size of Small Tail Han sheep(P<0.05).The full-length cDNA sequence of Juno and Izumo1 genes from Small Tail Han sheep were obtained.We found a new segment of the Izumo1 CDS consisting of 35 bp,and we confirmed the Izumo1 gene has 9 exons,not 8.RT-qPCR showed that Juno and Izumo1 genes were highly expressed in ovarian and testicular tissues,respectively(P<0.01).Single cell RNA-seq showed Juno was specifically expressed in oocytes,but not in granulosa cells or follicular theca,while Izumo1 displayed little to no expression in all three cell types.There was no difference in expression of the Juno gene in oocyte and ovarian tissue in sheep with different litter sizes,indicating expression of Juno is not related to litter size traits.Bioinformatic analysis revealed the g.848253 C>A locus of Juno results in a nonconservative missense point mutation leading to a change from Phe to Leu at position 219 in the amino acid sequence.Conclusions:For the first time,this study systematically analyzed the expression,structure and function of Juno and Izumo1 genes and their encoded proteins in Small Tail Han sheep,providing the basis for future studies of the regulatory mechanisms of Juno and Izumo1 genes.
基金supported by the National Natural Science Foundation of China(No.30270949)"863"Plan(No.2006AA10Z199)
文摘A single nucleotide polymorphism (SNP) of 805 bp region in the intron 6 of transfor- ming growth factor β1 (TGF-fll) gene was identified by polymerase chain reaction-single-strand composi- tion polymorphism (PCR-SSCP) in 196 sheep among Small-tailed Han sheep, Tong sheep, Tan sheep and Oula sheep. Comparative sequence analysis of cloned products revealed an AGAC deletion at 294 bases up-stream of exon 7 of the TGF-βI gene ( site 14201 in gi76871756). Statistical results of the genotype and allele frequencies in different breeds showed that gen- otype AB was dominant in the Small-tailed Han sheep. Genotype BB, however, was in majority in low- fecundity sheep. The results of a Chi-square test indi- cated that all the populations were in Hardy-Weinberg equilibrium.
文摘The present study was designed to determine the relationship between changes of plasma endothelin 1 concentrations and development of colonic obstruction in sleep.Colons were bound in three sheep with sterilized plastic tubes to make pathological model of colonic obstruction.Samples were collected before and after modeling operation on both controls and models.Endothelin 1 concentrations were measured by radioimmunoassay.Plasma ET llevels decreased continually after the modeling operation in the models,it dropped from a basal value of 60 93±18 66 to 34 11±8 22 and 33 54±11 12 pg/mL(P<0 05) on the 3rd and 5 th day,respectively,which were also lower than controls 64 16±12 93 pg/mL(P<0 05).It suggests that colonic obstruction may induce a decrease in plasma endothelin 1 concentrations in sleep.
基金Supported by Special Fund for Agro-scientific Research in the Public Interest from the Ministry of Agriculture(201003061)Key Project of Livestock and Poultry Breeding of Sichuan Province(01NG029-18)
文摘In this study, using Liangshan semi-fine wool sheep as an experimental material, full-length CDS sequence of IGFBP-1 gene was cloned with RT-PCR method and analyzed with bioinformatics methods. The results showed that the full-length CDS sequence of IGFBP-1 gene in Liangshan semi-fine wool sheep was 792 bp in length, encoding 263 amino acids. The CDS sequence shared 97%, 76% and 74% homology with bovine, human and rat, respectively; the amino acid sequence shared 97% , 69% and 71%, respectively. The GenBank accession number was FJ589639.1. The amino acid molecular weight of IGFBP-1 was 27.8 kD, and the theoretical isoelectric point (pl) was 5.99. The result of phylogenetic analysis showed that IGFBP-1 gene in Liangshan semi-fine wool sheep exhibited close phylogenetic relationships with bovine, goat and other mammals, and distant phylogenetic relationships with chicken and fish. IGFBP-1 gene had obvious hy- drophobic and hydrophilic regions, harboring one signal peptide, one transmembrane region, 16 phosphorylation sites, six N-glycesylation sites and eight O-glycosy- lation sites. The result of secondary structure analysis showed that the random coil, a-helix and 13-sheet regions accounted for 61.98%, 24.33% and 13.69%, re- spectively. The result of tertiary structure analysis showed that IGFBP-1 harbors an IGFBP_N domain and a thyrnglobulin type-1 domain. This study laid a solid foundation for further investigating the function of IGFBP-1 gene in sheep.
基金supported by the Program for Innovative Research of Ministry of Education, China (IRT0833)the Natural Science Foundation of Inner Mongolia, China (2009ZD05)
文摘Spermatogonial stem cells(SSCs) are unique stem cells in adult body that can transmit genetic information to the next generation. They have self-renewal potential and can continuously support spermatogenesis throughout life of a male animal. However, the SSC population is extremely small, isolation and purification of the SSCs is challenging, especially for livestock animals. It has been confirmed that CDH1(cadherin-1, also known as E-cadherin) can be expressed in undifferentiated SSCs of mouse and rats, but it has not been verified in sheep. Here, CDH1 was found as a novel surface marker for sheep SSCs. In this paper, sheep antiCDH1 polyclonal antibodies were prepared and its activity was checked. Using the obtained antibodies and immunohistochemistry analysis, we confirmed that CDH1 can be expressed by SSCs in sheep testis.
文摘It reveals that the MHC (major histocompatibility complex) gene product always involved in the control of immune response and disease resistance. Nowadays many studies have indicated the OLA (ovine lymphocyte antigen) DRB1 gene is associated with some sheep diseases. Tibetan sheep is one of the three major shag sheep breeds in China, and also have the largest number of China's sheep breeds. But till now no report has been seen on studying DRB1 gene in Tibetan sheep of China. To understand the evolution and provide the basis for sheep disease resistance, polymorphism in the exon2 ofDRB1 gene in Tibetan sheep was analyzed. The PCR-SSCP, cloning and sequencing were used to analyse DRB1 gene variation in 600 Tibetan sheep of China. And the genetic relationship and evolutionary significance of the alleles had also been analyzed. Total of 31 alleles were identified, in which 15 alleles had not been reported before. And there were 70 SNPs (single nucleotide polymorphisms) sites in 31 sheep DRB1 gene haplotypes, the proportion was 29.5% to the whole exort2 sequence. All of this indicated that DRB1 exon2 is highly polymorphic in Tibetan sheep. The variation identified here might have an impact on both the function and level of expression of the OLA-DRB1.
文摘本研究旨在探讨不同蛋白质水平日粮对绵羊胰岛素样生长因子-1(IGF-1)和生长激素(GH)分泌及基因mRNA表达量的影响,为科学配置肉羊饲料及研究肉羊生长发育提供基础。选择6月龄体重相近的多胎萨福克公羔18只,随机分为3组,分别饲喂不同蛋白质水平的日粮(低蛋白日粮、中蛋白日粮和高蛋白日粮)。采用ELISA方法和SYBR Green Real-time PCR方法检测日粮不同蛋白质水平对不同生长发育阶段(30、60、90和120d)羔羊外周血中IGF-1、GH浓度和皮肤组织中基因表达的影响。结果显示,日粮蛋白质水平显著影响绵羊平均日增重、外周血中IGF-1和GH的浓度以及皮肤组织IGF-1基因的表达丰度,而未显著影响GH基因的表达丰度。结果提示,随着日粮蛋白质水平的升高,绵羊生长发育快,外周血中IGF-1浓度增加,GH浓度降低,IGF-1基因表达量增加。