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Association of single nucleotide polymorphisms of brain-derived neurotrophic factor gene and multidrug resistance 1 gene to refractory epilepsy in Chinese Han children 被引量:2
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作者 Guangxin Wang Zuocheng Yang +1 位作者 Ruifeng Jin Ruopeng Sun 《Neural Regeneration Research》 SCIE CAS CSCD 2009年第11期901-906,共6页
BACKGROUND: There are two hypotheses for the underlying cause of refractory epilepsy: "target" and "transport". Studies have shown that brain-derived neurotrophic factor (BDNF) is over-expressed in refractory ... BACKGROUND: There are two hypotheses for the underlying cause of refractory epilepsy: "target" and "transport". Studies have shown that brain-derived neurotrophic factor (BDNF) is over-expressed in refractory epilepsy. Multidrug resistance 1 (MDR1) gene encodes for P-glycoprotein, the primary ATP-binding cassette transporter in the human body. Some single nucleotide polymorphisms of the MDR1 gene have been associated with refractory epilepsy. OBJECTIVE: To investigate the association between BDNF gene C270T polymorphism and MDR1 T-129C polymorphism with refractory epilepsy in Chinese Han children through the use of polymerase chain reaction (PCR)-restriction fragment length polymorphism analysis. DESIGN, TIME AND SETTING: A case-control, genetic association study was performed at the Central Laboratory, Third Xiangya Hospital of Central South University from June 2005 to November 2007. PARTICIPANTS: A total of 84 cases of unrelated children with epilepsy, including 41 cases of refractory epilepsy and 43 cases of drug-responsive epilepsy, were enrolled. An additional 30 healthy, Chinese Han children, whose ages and gender matched the refractory epilepsy patients, were selected as normal controls. METHODS: Venous blood was collected and genomic DNA was extracted from the blood specimens. C270T polymorphism in BDNF gene and T-129C polymorphism in MDR1 gene were genotyped using PCR-restriction fragment length polymorphism analysis. Association analysis using the Ftest and Chi-square test was statistically performed between C270T polymorphism in BDNF gene and T-129C polymorphism in MDR1 gene and refractory epilepsy. MAIN OUTCOME MEASURES: The distribution of genotypes and allele frequencies of C270T polymorphism in BDNF gene and T-129C polymorphism in MDR1 gene. RESULTS: The distribution of CC, CT, and TT genotypes, as well as C and T allele frequencies, in the BDNF gene was not significantly different between the refractory epilepsy group, drug-responsive epilepsy group, or the normal control group (P 〉 0.05). The distribution of TT genotype and T allele frequencies of the MDR1 gene was significantly different in the refractory epilepsy group compared with the drug-responsive epilepsy and normal control groups (P 〈 0.05). Comparison of haplotype combinations demonstrated that there were no significant differences in combinations of TT+CC, -FI-+CT, TC+CC, and TC+CT among the three groups (P 〉 0.05). CONCLUSION: C270T polymorphism of the BDNF gene was not associated with refractory epilepsy in Chinese Han children, but T-129C polymorphism in the MDR1 gene was associated with refractory epilepsy in Chinese Han children. The TT genotype and T allele frequencies could serve as susceptibility loci for refractory epilepsy. Interactions between C270T in BDNF gene and T-129C in MDR1 gene were not observed in refractory epilepsy in Chinese Han children. 展开更多
关键词 brain-derived neurotrophic factor gene multidrug resistance 1 gene single nucleotide polymorphisms CHILDREN refractory epilepsy
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Relation of cytochrome P450 2C19 gene 681G>A single nucleotide polynmrphism to clopidogrel resistance after PCI in Chinese
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作者 LIANG Zhen-yang,HAN Ya-ling,ZHANG Xiao-lin,YAN Cheng-hui (Department of Cardiology,Cardiovascular Institute of PLA, Shenyang Northern Hospital.Shenyang 110031,China) 《岭南心血管病杂志》 2011年第S1期155-155,共1页
Objectives Clopidogrel is a prodrug that has to be converted to an active metabolite by hepatic cytochrome P450(CYP) isoenzymes to inhibit platelet aggregation.Individualvariability of platelet inhibition by clopidogr... Objectives Clopidogrel is a prodrug that has to be converted to an active metabolite by hepatic cytochrome P450(CYP) isoenzymes to inhibit platelet aggregation.Individualvariability of platelet inhibition by clopidogrel suggests a possibility for genetic factors having a significant influence on clopidogrel responsiveness.In this study,we sought to determine the association between the single nucleotide polymorphism of CYP 2C19 681G】A and the occurrence of clopidogrel resistance(CR) in Chinese.Methods The study enrolled 614 hospitalized patients who underwentsuccessful percutaneouscoronary intervention with drug-eluting stents were received the treatmentwith dual antiplatelet regimen(aspirin plus clopidogrel).All patients received loading doses of 600 mg clopidogrel and 300 mg aspirin.20μmol/L ADP-induced platelet aggregation ratio(PAR ) was assessed 24 h after clopi- dogrel administration.The maximum residual PAR≥70%was defined as CR.Genomic DNA was extracted from whole blood samples according to standard protocols,the single nucleotide polymorphism of the CYP2C19 681G】A was genotyped by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) in all the patients.Results CR was found in 126 patients(20.5%).There was CYP2C19 681G】A polymorphism in the study population.The frequencies of the three kinds of genotypes(GG,GA,A A) in CR group and non-CR (NCR)group were 32.5%,47.6%,19.8%and 48.0%, 45.0%,7.0%,respectively.The frequency of AA genotype was significantly higher in NCR group than that in CR group (OR =3.03,95%CI:1.889~5.784,P=0.003).The A allele carriers were more likely to develop clopidogrel resistance compared with that of G allele carriers(OR=1.85,95%CI: 1.392~2.459,P=0.002).Conclusions CYP2C19 681G/A polymorphism is associated with the risk of CR,and the A allele carriers may be a possible genetic susceptibility factor for patients with CR. 展开更多
关键词 PCI Relation of cytochrome P450 2C19 gene 681G>A single nucleotide polynmrphism to clopidogrel resistance after PCI in Chinese GENE
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Temperature Dependent Resistivity of Chiral Single-Walled Carbon Nanotubes in the Presence of Coherent Light Source
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作者 Anthony Twum Raymond Edziah +6 位作者 Samuel Yeboah Mensah Kwadwo Dompreh Patrick Mensah-Amoah Augustine Arthur Natalia G. Mensah Kofi Adu George Nkrumah-Buandoh 《World Journal of Condensed Matter Physics》 CAS 2021年第4期77-86,共10页
We have studied the axial resistivity of chiral single-walled carbon nanotubes (SWCNTs) in the presence of a combined direct current and high frequency alternating fields. We employed semiclassical Boltzmann equations... We have studied the axial resistivity of chiral single-walled carbon nanotubes (SWCNTs) in the presence of a combined direct current and high frequency alternating fields. We employed semiclassical Boltzmann equations approach and compared our results with a similar study that examined the circumferential resistivity of these unique materials. Our work shows that these materials display similar resistivity for both axial and circumferential directions and this largely depends on temperature, intensities of the applied fields and material parameters such as chiral angle. Based on these low-temperature bidirectional conductivity responses, we propose chiral SWCNTs for design of efficient optoelectronic devices. 展开更多
关键词 Chiral single-Wall Carbon Nanotubes Boltzmann Transport Equation Axial resistivity Chiral Angle
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Practical Structural Design Approach of Multiconfiguration Planar Single‑Loop Metamorphic Mechanism with a Single Actuator 被引量:7
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作者 Qiang Yang Guangbo Hao +2 位作者 Shujun Li Hongguang Wang Haiyang Li 《Chinese Journal of Mechanical Engineering》 SCIE EI CAS CSCD 2020年第5期19-33,共15页
As a type of multiconfiguration mechanism that can operate in an under-actuated state,metamorphic mechanisms were proposed more than two decades ago and attracted significant interest.Studies on structural synthesis o... As a type of multiconfiguration mechanism that can operate in an under-actuated state,metamorphic mechanisms were proposed more than two decades ago and attracted significant interest.Studies on structural synthesis of metamorphic mechanisms tend to focus more on metamorphic techniques and the structural synthesis of source mechanisms for metamorphic mechanisms.By designing different constraint architectures of metamorphic joints,multistructures can be obtained from the same source metamorphic mechanism.To determine the constraint architectures of metamorphic joints and their different assembly combinations,a kinematic status matrix and a corresponding constraint status matrix are constructed based on the metamorphic cyclogram of a source mechanism.According to the equivalent resistance gradient model and the constraint status matrix,an equivalent resistance matrix for the metamorphic joints is proposed.A structural synthesis matrix of the metamorphic mechanism is then obtained from the equivalent resistance matrix by deducing the constraint form vectors of the metamorphic joints.Furthermore,a kinematic diagram synthesis of the source metamorphic mechanism of a planar single-loop metamorphic mechanism is proposed,which is based on only the 14 one-or zero-degrees-of-freedom linkage groups.The entire structural design method of a metamorphic mechanism is based on the structural synthesis matrix and is presented as a systematic process.Finally,the proposed structural design approach is illustrated by two examples to verify its feasibility and practicality.This study provides an effective method for designing a practical multi-mobility and multiconfiguration planar single-loop metamorphic mechanism with a single actuator. 展开更多
关键词 Metamorphic mechanism Structural design Form of metamorphic joints Multiconfiguration Equivalent resistance single actuator
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DENDRITE REFINING AND EUTECTIC TRANSFORMATION BEHAVIOR OF NICKEL-BASE SINGLE CRYSTAL (NBSC) SUPERALLOY 被引量:2
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作者 杜炜 李金山 +2 位作者 李建国 傅恒志 魏朋义 《Chinese Journal of Aeronautics》 SCIE EI CSCD 1998年第1期62-66,共5页
DENDRITEREFININGANDEUTECTICTRANSFORMATIONBEHAVIOROFNICKEL┐BASESINGLECRYSTAL(NBSC)SUPERALLOYDuWei(杜炜),LiJinsh... DENDRITEREFININGANDEUTECTICTRANSFORMATIONBEHAVIOROFNICKEL┐BASESINGLECRYSTAL(NBSC)SUPERALLOYDuWei(杜炜),LiJinshan(李金山),LiJianguo... 展开更多
关键词 nickel alloys single crystals heat resistant alloys dendrite arm spacing EUTECTICS
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Indentation size effect of germanium single crystal with different crystal orientations 被引量:6
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作者 Ning LIU Xiao-jing YANG +1 位作者 Zheng YU Lei ZHAO 《Transactions of Nonferrous Metals Society of China》 SCIE EI CAS CSCD 2020年第1期181-190,共10页
In order to study the indentation size effect(ISE)of germanium single crystals,nano-indentation experiments were carried out on the(100),(110)and(111)plane-orientated germanium single crystals.The true hardness of eac... In order to study the indentation size effect(ISE)of germanium single crystals,nano-indentation experiments were carried out on the(100),(110)and(111)plane-orientated germanium single crystals.The true hardness of each crystal plane of germanium single crystals was calculated based on the Meyer equation,proportional sample resistance(PSR)model and Nix-Gao model,and the indentation size effect(ISE)factor of each crystal plane was calculated.Results show that,the germanium single crystals experience elastic deformation,plastic deformation and brittle fracture during the loading process,and the three crystal planes all show obvious ISE phenomenon.All three models can effectively describe the ISE of germanium single crystals,and the calculated value of Nix-Gao model is the most accurate.Compared with the other two crystal planes,Ge(110)has the highest size effect factor m and the highest hardness,which indicates that Ge(110)has the worst plasticity. 展开更多
关键词 germanium single crystal indentation size effect Meyer equation proportional sample resistance(PSR)model Nix-Gao model
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Experimental investigation on seismic behavior of single piles in sandy soil 被引量:1
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作者 Werasak Raongjant 《Earthquake Engineering and Engineering Vibration》 SCIE EI CSCD 2011年第3期417-422,共6页
This paper describes a quasi-static test program featuring lateral cyclic loading on single piles in sandy soil. The tests were conducted on 18 aluminum model piles with different cross sections and lateral load eccen... This paper describes a quasi-static test program featuring lateral cyclic loading on single piles in sandy soil. The tests were conducted on 18 aluminum model piles with different cross sections and lateral load eccentricity ratios, e/d, (e is the lateral load eccentricity and d is the diameter of pile) of 0, 4 and 8, embedded in sand with a relative density of 30% and 70%. The experimental results include lateral load-displacement hysteresis loops, skeleton curves and energy dissipation curves. Lateral capacity, ductility and energy dissipation capacity of single piles under seismic load were evaluated in detail. The lateral capacities and the energy dissipation capacity of piles in dense sand were much higher than in loose sand. When embedded in loose sand, the maximum lateral load and the maximum lateral displacement of piles increased as e/d increased. On the contrary, when embedded in dense sand, the maximum lateral load of piles decreased as e/d increased. Piles with a higher load eccentricity ratio experienced higher energy dissipation capacity than piles with e/d of 0 in both dense and loose sand. At a given level of displacement, piles with circular cross sections provided the best energy dissipation capacity in both loose and dense sand. 展开更多
关键词 seismic behavior single pile sandy soil load eccentricity ratio lateral resistance
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Preparation of a single-phase Mg-6Zn alloy via ECAP-stimulated solution treatment 被引量:3
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作者 Kai Yan Huan Liu +4 位作者 Na Feng Jing Bai Honghui Cheng Jingjing Liu Fuyu Huang 《Journal of Magnesium and Alloys》 SCIE EI CAS 2019年第2期305-314,共10页
The solution of the intermetallic phase and the homogenization of composition are important for Mg alloy biomaterials.A single-phase Mg-6Zn alloy with the average grain size of about 20μm was prepared by ECAP process... The solution of the intermetallic phase and the homogenization of composition are important for Mg alloy biomaterials.A single-phase Mg-6Zn alloy with the average grain size of about 20μm was prepared by ECAP processed for six passes at 320°C.It indicated that the ECAP could significantly promote the process of solid solution in Mg-Zn alloy.The results showed that complete dissolution of the intermetallic phase improved the corrosion resistance of Mg-6Zn alloy in 0.9%NaCl solution by turning the corrosion behavior into uniform corrosion and increased the hardness in combination with its smaller grain size. 展开更多
关键词 Mg-6Zn alloy Equal-channel angular pressing(ECAP) Solution treatment single phase Corrosion resistance
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Scanning probe lithography on calixarene towards single-digit nanometer fabrication 被引量:3
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作者 Marcus Kaestner Ivo W Rangelow 《International Journal of Extreme Manufacturing》 2020年第3期104-124,共21页
Cost effective patterning based on scanning probe nanolithography(SPL)has the potential for electronic and optical nano-device manufacturing and other nanotechnological applications.One of the fundamental advantages o... Cost effective patterning based on scanning probe nanolithography(SPL)has the potential for electronic and optical nano-device manufacturing and other nanotechnological applications.One of the fundamental advantages of SPL is its capability for patterning and imaging employing the same probe.This is achieved with self-sensing and self-actuating cantilevers,also known as‘active'cantilevers.Here we used active cantilevers to demonstrate a novel path towards single digit nanoscale patterning by employing a low energy(<100 eV)electron exposure to thin films of molecular resist.By tuning the electron energies to the lithographically relevant chemical resist transformations,the interaction volumes can be highly localized.This method allows for greater control over spatially confined lithography and enhances sensitivity.We found that at low electron energies,the exposure in ambient conditions required approximately 10 electrons per single calixarene molecule to induce a crosslinking event.The sensitivity was 80-times greater than a classical electron beam exposure at 30 keV.By operating the electro-exposure process in ambient conditions a novel lithographic reaction scheme based on a direct ablation of resist material(positive tone)is presented. 展开更多
关键词 nanofabrication field-emission scanning probe lithography single nanometer lithography molecular resist
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The Changes in Anti-oxidant Activity of Roots in Wintering Period under Single Sowing of Alfalfa and Mixed Sowing of Alfalfa and Bromus inermis Leyss
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作者 Xiaohui SHEN 《Asian Agricultural Research》 2017年第2期29-32,共4页
This paper aimed to study the change in MDA content and antioxidant enzyme activity of roots in wintering period under single sowing of alfalfa and mixed sowing of alfalfa and Bromus inermis Leyss.By the single sowing... This paper aimed to study the change in MDA content and antioxidant enzyme activity of roots in wintering period under single sowing of alfalfa and mixed sowing of alfalfa and Bromus inermis Leyss.By the single sowing of 4 alfalfa varieties with different cold resistance and mixed sowing of alfalfa varieties and Bromus inermis Leyss,the changes in MDA content,SOD,POD and CAT activity of alfalfa roots throughout the wintering period were measured.Results indicated that after single sowing of alfalfa and mixed sowing of alfalfa and Bromus inermis Leyss,the MDA content of roots showed an up-down-up trend with temperature; the CAT activity increased with the decreasing temperature but decreased when the temperature rose in the spring of the following year; the SOD and POD activity showed an increasing trend with sharp decline in temperature,and decreased when the temperature continued to decline,but increased with alfalfa reviving in the following year.The enzymic activity of the same variety under mixed sowing was higher than under single sowing.The membership function was used for comprehensive evaluation of cold resistance,and the cold resistance under different treatments was in the order of Wega7F + Bromus inermis Leyss >Wega7F > Xunlu + Bromus inermis Leyss > Xunlu > Aohan + Bromus inermis Leyss > Aohan > WL319HQ + Bromus inermis Leyss > WL319HQ.This was of great significance to the study on cold resistant alfalfa breeding and cultivation in cold areas of northern China. 展开更多
关键词 ALFALFA Bromus inermis Leyss single sowing Mixed sowing Cold resistance
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Anisotropic superconducting properties of FeSe_(0.5)Te_(0.5) single crystals
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作者 Jia-Ming Zhao Zhi-He Wang 《Chinese Physics B》 SCIE EI CAS CSCD 2022年第9期519-526,共8页
We investigated the anisotropic electrical transport and magnetic properties of FeSe_(0.5)Te_(0.5) single crystals grown by the self-flux method.The in-plane resistivity shows a metallic-like temperature dependence,wh... We investigated the anisotropic electrical transport and magnetic properties of FeSe_(0.5)Te_(0.5) single crystals grown by the self-flux method.The in-plane resistivity shows a metallic-like temperature dependence,while the out-of-plane resistivity shows a broad hump with a maximum at around 64 K.The magnetization loops for H//c-axis and H//ab-plane are also different,for example,there is a typical second peak for H//c-axis.The in-plane critical current density is larger than the out-of-plane one.The coherence length and penetration depth were estimated by the Ginzburg-Landau theory.The anisotropic parameterγdepends on the applied magnetic field and the temperature.The coupling of superconducting FeSe(Te)layers and the flux pinning mechanism relevant to anisotropy are also discussed. 展开更多
关键词 FeSe_(1-x)Te_(r)single crystal anisotropy resistIVITY MAGNETIZATION
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Exploring the hepatitis C virus genome using single molecule realtime sequencing 被引量:2
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作者 Haruhiko Takeda Taiki Yamashita +1 位作者 Yoshihide Ueda Akihiro Sekine 《World Journal of Gastroenterology》 SCIE CAS 2019年第32期4661-4672,共12页
Single molecular real-time(SMRT)sequencing,also called third-generation sequencing,is a novel sequencing technique capable of generating extremely long contiguous sequence reads.While conventional short-read sequencin... Single molecular real-time(SMRT)sequencing,also called third-generation sequencing,is a novel sequencing technique capable of generating extremely long contiguous sequence reads.While conventional short-read sequencing cannot evaluate the linkage of nucleotide substitutions distant from one another,SMRT sequencing can directly demonstrate linkage of nucleotide changes over a span of more than 20 kbp,and thus can be applied to directly examine the haplotypes of viruses or bacteria whose genome structures are changing in real time.In addition,an error correction method(circular consensus sequencing)has been established and repeated sequencing of a single-molecule DNA template can result in extremely high accuracy.The advantages of long read sequencing enable accurate determination of the haplotypes of individual viral clones.SMRT sequencing has been applied in various studies of viral genomes including determination of the full-length contiguous genome sequence of hepatitis C virus(HCV),targeted deep sequencing of the HCV NS5A gene,and assessment of heterogeneity among viral populations.Recently,the emergence of multi-drug resistant HCV viruses has become a significant clinical issue and has been also demonstrated using SMRT sequencing.In this review,we introduce the novel third-generation PacBio RSII/Sequel systems,compare them with conventional next-generation sequencers,and summarize previous studies in which SMRT sequencing technology has been applied for HCV genome analysis.We also refer to another long-read sequencing platform,nanopore sequencing technology,and discuss the advantages,limitations and future perspectives in using these thirdgeneration sequencers for HCV genome analysis. 展开更多
关键词 Third generation SEQUENCING PacBio RSII single molecule real-time SEQUENCING HEPATITIS C virus resistance-associated SUBSTITUTION NANOPORE sequencer
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Performance Characteristics of Geothermal Single Well for Building Heating
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作者 Jingying Li Tiejun Zhu +3 位作者 Fengming Li Dong Wang Xianbiao Bu Lingbao Wang 《Energy Engineering》 EI 2021年第3期517-534,共18页
The single well geothermal heating(SWGH)technology has attracted extensive attention.To enhance heat extraction from SWGH,a mathematical model describing heat transfer is set up,and the key influence factor and heat t... The single well geothermal heating(SWGH)technology has attracted extensive attention.To enhance heat extraction from SWGH,a mathematical model describing heat transfer is set up,and the key influence factor and heat transfer enhancement method are discussed by thermal resistance analysis.The numerical results show that the thermal resistance of rock is far greater than that of well wall and fluid.So,reducing rock thermal resistance is the most effective method for enhancing the heat extraction power.For geothermal well planning to drill:rock thermal resistance can be reduced by increasing well diameter and rock thermal conductivity;the temperature difference between liquid and rock can be raised by increasing well depth.For already existing geothermal well:an insulator with thermal conductivity of 0.2 W/(mK)is sufficient to preserve fluid enthalpy;a decrease in injection water temperature causes the increase of heat extraction power from geothermal well and heat output from heat pump simultaneously;increasing injection velocity causes the increase of pump power consumption and heat extraction power from geothermal well as well as net heat output between them.The entrepreneurs may refer to the above data in actual project.Furthermore,filling composite materials with high thermal conductivity into leakage formation is proposed in order to reduce the thermal resistance of rocks. 展开更多
关键词 Geothermal heating heat transfer enhancement single well experiment validation deep borehole heat exchanger thermal resistance
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Adiponectin Gene Variation -4522C/T Is Associated with Type 2 Diabetic Obesity and Insulin Resistance in Chinese 被引量:2
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作者 刘合焜 陈素云 +4 位作者 张思仲 肖翠英 任艳 田浩明 李雪飞 《Journal of Genetics and Genomics》 SCIE CAS CSCD 北大核心 2007年第10期877-884,共8页
The authors investigated the possible association of -4522C/T variation of adiponectin gene with coronary heart disease (CHD) and type 2 diabetes mellitus (T2DM). Genotyping of SNP --4522C/T in 304 patients with C... The authors investigated the possible association of -4522C/T variation of adiponectin gene with coronary heart disease (CHD) and type 2 diabetes mellitus (T2DM). Genotyping of SNP --4522C/T in 304 patients with CHD, 389 patients with T2DM, and 405 age and sex-matched healthy control subjects was carried out by means of PCR-RFLP approach. No significant difference in the genotype or allele frequencies was found, either between patients with CHD and control subjects, or between patients with T2DM and control subjects. However, in the subgroup analysis, an association of the TAr genotype and T allele with type 2 diabetes combined with obesity (BMI ≥ 25 kg/m2) was found (P = 0.014 and P = 0.034, respectively). Also the homeostasis model assessment of insulin resistance (HOMA-IR) in T2DM patients with T/T genotype was significantly higher than that in T2DM patients carrying C allele (P = 0.0069). The authors' findings for the first time demonstrated that SNP --4522 in the adiponectin gene was associated with T2DM that combined with obesity and higher insulin resistance index in patients with T2DM. This indicated that the variation might associate with an increased susceptibility to type 2 diabetic obesity and insulin resistance. But -4522C/T polymorphism did not contribute to the susceptibility of CHD. 展开更多
关键词 ADIPONECTIN single nucleotide polymorphism coronary heart disease type 2 diabetes insulin resistance
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Meta-analysis of QTL for Fusarium head blight resistance in Chinese wheat landraces 被引量:2
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作者 Jin Cai Shan Wang +3 位作者 Zhenqi Su Tao Li Xianghui Zhang Guihua Bai 《The Crop Journal》 SCIE CAS CSCD 2019年第6期784-798,共15页
Epidemics of Fusarium head blight(FHB), incited by Fusarium graminearum Schwabe, in wheat cause significant reductions in grain yield and quality. Numerous quantitative trait loci(QTL) for FHB resistance have been rep... Epidemics of Fusarium head blight(FHB), incited by Fusarium graminearum Schwabe, in wheat cause significant reductions in grain yield and quality. Numerous quantitative trait loci(QTL) for FHB resistance have been reported from Chinese sources. However, the relationships among QTL from different landraces have not been characterized. We earlier mapped QTL for FHB resistance using low-density maps developed from five recombinant inbred line(RIL) populations involving Chinese landraces ‘Haiyanzhong’(HYZ),‘Wangshuibai’(WSB), ‘Baishanyuehuang’(BSYH), ‘Huangfangzhu’(HFZ), and‘Huangcandou’(HCD) as FHB resistant parents. In this study, we used maps of single nucleotide polymorphisms(SNP) developed from the five populations and identified 31 QTL on 16 chromosomes;10 QTL were new. We constructed a consensus map and identified six meta-QTL(MQTL) and SNP within the MQTL regions using meta-analysis. Two of the MQTL were on chromosome 3 BS(3 BSd and 3 BSc), and one on each of chromosomes 3A, 2D, 3D,and 4D. Twenty-two SNP closely linked to MQTL were converted into breeder friendly Kompetitive Allele Specific Polymerase Chain Reaction(KASP) assays, which should be useful for marker-assisted selection in breeding programs. 展开更多
关键词 Genotyping-by-sequencing FHB resistANCE KASP META-ANALYSIS of QTL single nucleotide polymorphism TRITICUM AESTIVUM
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Development of a 50K SNP Array for Japanese Flounder and Its Application in Genomic Selection for Disease Resistance 被引量:7
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作者 Qian Zhou Ya-dong Chen +7 位作者 Sheng Lu Yang Liu Wen-teng Xu Yang-zhen Li Lei Wang Na Wang Ying-ming Yang Song-lin Chen 《Engineering》 SCIE EI 2021年第3期406-411,共6页
Single nucleotide polymorphism(SNP)armays are a powerful genotyping tool used in genetic research and genomic breeding programs.Japanese flounder(Paralichthys olivaceus)is an economically-important aquaculture flatfis... Single nucleotide polymorphism(SNP)armays are a powerful genotyping tool used in genetic research and genomic breeding programs.Japanese flounder(Paralichthys olivaceus)is an economically-important aquaculture flatfish in many countries.However,the lack of high-efficient genotyping tools has impeded the genomic breeding programs for Japanese flounder.We developed a 50K Japanese flounder SNP array,"Yuxin No.1,"and report its utility in genomic selection(GS)for disease resistance to bacterial pathogens.We screened more than 42,.2 million SNPs from the whole-genome resequencing data of 1099 individuals and selected 48697 SNPs that were evenly distributed across the genome to anchor the array with Affymetrix Axiom genotyping technology.Evaluation of the array performance with 168 fishs howed that 74.7%of the loci were successfully genotyped with high call rates(>98%)and that the poly-morphic SNPs had good cluster separations.More than 85%of the SNPs were concordant with SNPs obtained from the whole-genome resequencing data.To validate"Yuxin No.1"for GS,the arrayed geno-typing data of 27 individuals from a candidate population and 931 individuals from a reference popula-tion were used to calculate the genomic estimated breeding values(GEBVs)for disease resistance toEdwardsiella tarda.There was a 21.2%relative increase in the accuracy of GEBV using the weighted geno-mic best linear unpiased prediction(wGBLUJP),compared to traditional pedigree-based best linear unbi-ased prediction(ABLUP),suggesting good performance of the'Yuxin No.1"SNP array for GS.In summary,we developed the"Yuxin No.1"50K SNP array,which provides a useful platform for high-quality geno-typing that may be beneficial to the genomic selective breeding of Japanese flounder. 展开更多
关键词 Paralichthys olivaceus single nucleotide polymorphism SNP array Disease resistance Genomic selection
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Association Analysis and Identification of SNP Markers for Stemphylium Leaf Spot (Stemphylium botryosum f. sp. spinacia) Resistance in Spinach (Spinacia oleracea) 被引量:2
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作者 Ainong Shi Beiquan Mou +5 位作者 Jim Correll Steven T. Koike Dennis Motes Jun Qin Yuejin Weng Wei Yang 《American Journal of Plant Sciences》 2016年第12期1600-1611,共12页
Stemphylium leaf spot, caused by Stemphylium botryosum f. sp. spinacia, is an important fungal disease of spinach (Spinacia oleracea L.). The aim of this study was to conduct association analysis to identify single nu... Stemphylium leaf spot, caused by Stemphylium botryosum f. sp. spinacia, is an important fungal disease of spinach (Spinacia oleracea L.). The aim of this study was to conduct association analysis to identify single nucleotide polymorphism (SNP) markers associated with Stemphylium leaf spot resistance in spinach. A total of 273 spinach genotypes, including 265 accessions from the USDA spinach germplasm collection and eight commercial cultivars, were used in this study. Phenotyping for Stemphylium leaf spot resistance was evaluated in greenhouse;genotyping was conducted using genotyping by sequencing (GBS) with 787 SNPs;and single marker regression, general linear model, and mixed linear model were used for association analysis of Stemphylium leaf spot. Spinach genotypes showed a skewed distribution for Stemphylium leaf spot resistance, with a range from 0.2% to 23.5% disease severity, suggesting that Stemphylium leaf spot resistance in spinach is a complex, quantitative trait. Association analysis indicated that eight SNP markers, AYZV02052595_115, AYZV02052595_122, AYZV02057770_10404, AYZV02129827_205, AYZV0-2152692_182, AYZV02180153_337, AYZV02225889_197, and AYZV02258563_213 were strongly associated with Stemphylium leaf spot resistance, with a Log of the Odds (LOD) of 2.5 or above. The SNP markers may provide a tool to select for Stemphylium leaf spot resistance in spinach breeding programs through marker-assisted selection (MAS). 展开更多
关键词 Genotyping by Sequencing (GBS) Disease resistance single Nucleotide Polymorphism (SNP) Spinacia oleracea Stemphylium botryosum Stemphylium Leaf Spot
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A new ALF from Litopenaeus vannamei and its SNPs related to WSSV resistance 被引量:1
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作者 刘敬文 于洋 +2 位作者 李富花 张晓军 相建海 《Chinese Journal of Oceanology and Limnology》 SCIE CAS CSCD 2014年第6期1232-1247,共16页
Anti-lipopolysaccharide factors (ALFs) are basic components of the crustacean immune system that defend against a range of pathogens. The cDNA sequence of a new ALF, designated nLvALF2, with an open reading flame en... Anti-lipopolysaccharide factors (ALFs) are basic components of the crustacean immune system that defend against a range of pathogens. The cDNA sequence of a new ALF, designated nLvALF2, with an open reading flame encoding 132 amino acids was cloned. Its deduced amino acid sequence contained the conserved functional domain of ALFs, the LPS binding domain (LBD). its genotnic sequence consisted of three exons and four introns, nLvALF2 was mainly expressed in the Oka organ and gills of shrimps. The transcriptional level of nLw4LF2 increased significantly after white spot syndrome virus (WSSV) infection, suggesting its important roles in protecting shrimps from WSSV. Single nucleotide polymorphisms (SNPs) were found in the genomic sequence of nLvALF2, of which 38 were analyzed for associations with the susceptibility/resistance of shrimps to WSSV. The loci g.2422 A〉G, g.2466 T〉C, and g.2529 G〉A were significantly associated with the resistance to WSSV (P〈0.05). These SNP loci could be developed as markers for selection of WSSV-resistant varieties ofLitopenaeus vannamei. 展开更多
关键词 anti-lipopolysaccharide factors (ALFs) single nucleotide polymorphisms (SNPs) white spotsyndrome virus (WSSV) resistance Litopenaeus vannamei
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Identification of QTLs for Blast, Bacterial Blight, and Planthopper Resistance Using SNP-Based Linkage Maps from Two Recombinant Inbred Rice Lines
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作者 Jirapong Jairin Phanchita Vejchasarn +9 位作者 Thanapa Somjai Kanuengnij Srivilai Kulchana Darwell Phikul Leelagud Rungnapa Kawichai Jate Kotcharerk Arissara Suthanthangjai Nattaya Popa Suphalaksana Lachanthuek Varapong Chamarerk 《American Journal of Plant Sciences》 2019年第5期760-779,共20页
Rice is the most significant global food security. Several biotic factors limit rice production, breeding biotic-resistant rice has, therefore, become an increasingly important goal. Two elite rice lines, IR71033-121-... Rice is the most significant global food security. Several biotic factors limit rice production, breeding biotic-resistant rice has, therefore, become an increasingly important goal. Two elite rice lines, IR71033-121-15 (IR71033) and IR57514-PMI-5-B-1-2 (IR57514), provide potential genes for biotic stress resistance traits. In this study, genotyping by sequencing (GBS) for single nucleotide polymorphism (SNP)-based linkage map construction was used to detect quantitative trait loci (QTLs) for blast (BL), bacterial blight (BB), whitebacked planthopper (WBPH), and brown planthopper (BPH) resistance. IR71033 was derived from Oryza minuta and carried BL, BB, WBPH, and BPH resistance QTLs. IR57514 is a well-adapted rainfed lowland line that carries BL and BB resistance QTLs. Two sets of recombinant inbred line (RIL) populations derived from crosses of KDML105 × IR71033 and KDML105 × IR57514 were used to dissect the genetic basis of disease and insect pest resistance. The RIL populations were evaluated for BL, BB, WBPH, and BPH resistance from 2016 to 2018 at four rice research centers in Thailand. From these, we identified a large number of SNPs through GBS and constructed high-resolution linkage maps. By combining phenotypic evaluation with the GBS data, a total of 24 QTLs on four chromosomes were detected that confered pest resistance and explained 7.3% - 61.4% of the phenotypic variance. These findings should facilitate identifying novel resistance genes and applying marker-assisted selection for resistance to the four major rice pests investigated here. These strategies will improve the resilience and reliability of rice varieties adapted to the low-yielding environment of rainfed lowland areas worldwide. 展开更多
关键词 Recombinant INBRED Line Genotyping by Sequencing resistANCE Gene RAINFED Lowland RICE single Nucleotide Polymorphism Quantitative Trait Locus
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Association analysis of BclI with benign lymphoepithelial lesions of the lacrimal gland and glucocorticoids resistance
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作者 Xu-Juan Zhang Peng-Xiang Zhao +6 位作者 Ming-Shen Ma Hao Wu Rui Liu Hui Wang Meng-Yu Liu Fei Xie Xue-Mei Ma 《International Journal of Ophthalmology(English edition)》 SCIE CAS 2023年第11期1734-1745,共12页
AIM:To evaluate the relationship between gene polymorphism(BclI,ER22/23EK,N363S)and the occurrence,progression and sensitivity to glucocorticoid of lacrimal gland benign lymphoepithelial lesion(LGBLEL).METHODS:Clinica... AIM:To evaluate the relationship between gene polymorphism(BclI,ER22/23EK,N363S)and the occurrence,progression and sensitivity to glucocorticoid of lacrimal gland benign lymphoepithelial lesion(LGBLEL).METHODS:Clinical peripheral blood samples of 52 LGBLEL patients and 10 normal volunteers were collected for DNA extraction and polymerase chain reaction sequencing to analyze single nucleotide polymorphism(SNP)genotypes.The lacrimal tissues of LGBLEL were surgically removed and made into paraffin sections for subsequent hematoxylin-eosin(HE)and Masson staining analysis.The duration of disease and hormone use of LGBLEL patients from diagnosis to surgery were also analyzed.The Meta-analysis follows PRISMA guidelines to conducted a systematic review of human studies investigating the relationship between the NR3C1 BclI polymorphism and glucocorticoids(GCs)sensitivity.RESULTS:There was no association between ER22/23EK or N363S and the occurrence of LGBLEL or GCs sensitivity(P>0.05);BclI GC genotype was closely related to GCs resistance(P=0.03)as is the minor allele C(P=0.0017).The HE staining and Masson staining showed that the GC genotype of BclI remarkably slowed down the disease progression and reduced fibrosis(P<0.05),especially for GCs-dependent patients(P<0.0001).Meta-analysis showed that BclI was not significantly associated with GCs responsiveness.CONCLUSION:The LGBLEL patients who carry the NR3C1 BclI allele C may be more sensitive to GCs and associated with lower fibrosis and slower disease progression.The results may guide the clinical treatment strategy for the LGBLEL patients. 展开更多
关键词 lacrimal gland benign lymphoepithelial lesion Bcll single nucleotide polymorphisms glucocorticoids resistance FIBROSIS
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