Adaptive genetic diversity of dominant species contributes to species co-existence and community assembly

The synthesis of evolutionary biology and community ecology aims to understand how genetic variation within one species can shape community properties and how the ecological properties of a community can drive the evolution of a species.A rarely explored aspect is whether the interaction of genetic variation and community properties depends on the species'ecological role.Here we investigated the interactions among environmental factors,species diversity,and the within-species genetic diversity of species with different ecological roles.Using high-throughput DNA sequencing,we genotyped a canopydominant tree species,Parashorea chinensis,and an understory-abundant species,Pittosporopsis kerrii,from fifteen plots in Xishuangbanna tropical seasonal rainforest and estimated their adaptive,neutral and total genetic diversity;we also surveyed species diversity and assayed key soil nutrients.Structural equation modelling revealed that soil nitrogen availability created an opposing effect in species diversity and adaptive genetic diversity of the canopy-dominant Pa.chinensis.The increased adaptive genetic diversity of Pa.chinensis led to greater species diversity by promoting co-existence.Increased species diversity reduced the adaptive genetic diversity of the dominant understory species,Pi.kerrii,which was promoted by the adaptive genetic diversity of the canopy-dominant Pa.chinensis.However,such relationships were absent when neutral genetic diversity or total genetic diversity were used in the model.Our results demonstrated the important ecological interaction between adaptive genetic diversity and species diversity,but the pattern of the interaction depends on the identity of the species.Our results highlight the significant ecological role of dominant species in competitive interactions and regulation of community structure.

The Predatory Function of Three Spiders to Two Insect Pests in Rice Within a Multi-species Co-existence System

The prey-seeking behavior of three spiders (X1-Pirata subpiraticus, X2-Clubiona japonicola and X3-Tetragnatha japonica) for brown plant hopper (X4-Nilaparvata lugens) and rice spittle bug (X5-Cal-litettix versicolor) was investigated, as well as how interference between and within species occurred, by using a quadratic regression rotational composite design. Six predation models derived from the analysis of interactions among and within predators and preys were developed. The total predatory capacity of spiders on rice insect pests after coexistence for one day can be expressed as follows: Y3 = 32.795 + 2.25X1 + 1.083X2 + 0.5X3 + 10.167X4 + 3.167X5 - 1.67X12 - 2.42X22 - 3.295X32 - 0.045X42 + 0.455X52 - 3.125X1X2 + 0.375X1X3 -0.625X1X4 - 0.375X1X5 + 0.375X2X3 - 0.875X2X4 + 0.125X2X5 + 0.375X3X4 - 0.375X3X5 + 0.125X4X5. The principal efficiency analysis using this model indicated that increases in insect pest density significantly increased predation by predators; this was much greater than the effect of any single predator. X4 had a greater effect than X5; however, X4 and X5 demonstrated little interspecific interference and even promoted each other and increased predation rates as the densities of the two pests increased. Among the three predators, an increase in the density of X, had the greatest effect on the increase in predation, X3 had the second, X2 the third greatest effect. As predator density increased inter- and intra-species interference occurred, which were largely related to the size, activity, niche breadth, niche overlap and searching efficiency of the predators. X2 produced the greatest interference between different individuals and between any other predator species. X3 had the second greatest, which reduced predation levels at high predator densities. Because of these factors, the highest predation rate was obtained at a prey density of 120 per 4 rice-hills. The optimal proportion of the three predators in the multi-predator prey system was X1: X2: X3 = 5.6:1.3:4.1.

Community structure and species diversity dynamics of a subtropical evergreen broad-leaved forest in China:2005 to 2020

Here,we characterize the temporal and spatial dynamics of forest community structure and species diversity in a subtropical evergreen broad-leaved forest in China.We found that community structure in this forest changed over a 15-year period.Specifically,renewal and death of common species was large,with the renewal of individuals mainly concentrated within a few populations,especially those of Aidia canthioides and Cryptocarya concinna.The numbers of individual deaths for common species were concentrated in the small and mid-diameter level.The spatial distribution of community species diversity fluctuated in each monitoring period,showing a more dispersed diversity after the 15-year study period,and the coefficient of variation on quadrats increased.In 2010,the death and renewal of the community and the spatial variation of species diversity were different compared to other survey years.Extreme weather may have affected species regeneration and community stability in our subtropical monsoon evergreen broad-leaved forests.Our findings suggest that strengthening the monitoring and management of the forest community will help better understand the long-and short-term causes of dynamic fluctuations of community structure and species diversity,and reveal the factors that drive changes in community structure.

Seedling potential of trees species along the elevational gradient in temperate hill forest of central Nepal

Regeneration status of tree species along elevation gradient in temperate hill forest was not understood greatly.Present research examined the tree diversity and its regeneration patterns along an elevation gradient in temperate hill forest,central Nepal.Data were collected from 300 sample plots within vertical elevation bands of 10,ranging from 1365 to 2450 m asl.A random sampling method was used for data collection in three seasons,winter,pre-monsoon and post monsoon seasons.Diameter at breast height(DBH)was used to broadly categorize the plant individual into trees,saplings and seedlings.The tree species richness ranged from 12 to 25 with density of 350 to 1200 individuals per hectare.Species richness of tree and sapling showed statistically significant unimodal pattern,which peaked at mid-elevation.Elevation showed a strong and positive linear correlation with the seedling density(Deviance=0.99,p<0.001)and a significant hump-shaped relationship with sapling density(Deviance=0.95,p<0.001).Similarly,elevations showed a statistically significant negative hump-shaped relationship with all trees,saplings and seedling stages(Deviances=0.89,0.87 and 0.57).The highest values of the Shannon-Wiener index and the lowest value of the Simpson index were found at mid-elevation for all growth forms.Nearly 92%of tree species were found at regenerating stage;49%in a good renewal regeneration status,32%in fair renewal regeneration,and 11%at a poor regenerating condition.Nevertheless,4%of tree species were reported as non-regenerating stages and 4%were newly introduced species.Hence,the regeneration status of the study area was considered fairly well since sapling(78.5%)>seedling(10.6%)≤mature(10.9%).Among tested environmental variables,elevation and annual mean rainfall were the most influential factors in the regeneration of tree species.

Climate-change habitat shifts for the vulnerable endemic oak species(Quercus arkansana Sarg.)

Quercus arkansana(Arkansas oak)is at risk of becoming endangered,as the total known population size is represented by a few isolated populations.The potential impact of climate change on this species in the near future is high,yet knowledge of its predicted effects is limited.Our study utilized the biomod2 R package to develop habi-tat suitability ensemble models based on bioclimatic and topographic environmental variables and the known loca-tions of current distribution of Q.arkansana.We predicted suitable habitats across three climate change scenarios(SSP1-2.6,SSP2-4.5,and SSP5-8.5)for 2050,2070,and 2090.Our findings reveal that the current suitable habitat for Q.arkansana is approximately 127,881 km^(2) across seven states(Texas,Arkansas,Alabama,Louisiana,Mississippi,Georgia,and Florida);approximately 9.5%is encompassed within state and federally managed protected areas.Our models predict that all current suitable habitats will disap-pear by 2050 due to climate change,resulting in a northward shift into new regions such as Tennessee and Kentucky.The large extent of suitable habitat outside protected areas sug-gests that a species-specific action plan incorporating pro-tected areas and other areas may be crucial for its conserva-tion.Moreover,protection of Q.arkansana habitat against climate change may require locally and regionally focused conservation policies,adaptive management strategies,and educational outreach among local people.

An unprotected vulnerable relict subtropical conifer-Keteleeria evelyniana: Its forests, populations, growth and endangerment by invasive alien plant species in China

Relict subtropical coniferous forests in China face severe fragmentation,resulting in declining populations,and some are under significant threat from invasive alien species.Despite the crucial importance of understanding forest dynamics,knowledge gaps persist,particularly regarding the impact of invasive plants on vulnerable natives like Keteleeria evelyniana.In this study,we investigated the impact of invasive plants on the regeneration of forests dominated by K.evelyniana,a subtropical relict species in southwestern China.For this purpose,we characterized forest dynamics of 160 forest plots featuring K.evelyniana as the primary dominant species and determined whether the presence of invasive plants was correlated with regeneration of K.evelyniana.We identified four distinct forest types in which K.evelyniana was dominant.We found that radial growth of K.evelyniana trees is faster in younger ageclasses today than it was for older trees at the same age.The population structure of K.evelyniana in each forest type exhibited a multimodal age-class distribution.However,three forest types lacked established saplings younger than 10 years old,a situation attributed to the dense coverage of the invasive alien Ageratina adenophora.This invasive species resulted in a reduction of understory species diversity.Additionally,our analysis uncovered a significant negative correlation in phylogenetic relatedness(net relatedness index)between native and invasive alien plant species in eastern Yunnan.This suggests closely related invasive species face heightened competition,hindering successful invasion.Taken together,our findings indicate that successful establishment and habitat restoration of K.evelyniana seedling/saplings require effective measures to control invasive plants.

Detecting the distribution of and public attitudes to charismatic alien species based on media coverage

Charismatic species are often reported by the media,providing information for detecting population status and public perception.To identify the number and distribution of free-living Black Swan(Cygnus atratus),a charismatic alien species in Chinese mainland and to detect the public and the media attitudes to the species,we analyzed the reports and emotional tendency from media coverage in 2000-2022 using manual reading,crawler extraction and latent Dirichlet allocation.A total of 6654 Black Swans were reported at 711 sites,including 147 individuals at 30 nature reserves.Successful breeding was reported at one-fourth of the total sites,including five nature reserves.The proportion of positive emotional tendency to Black Swans was overwhelming in the reports and was higher than that to alien species in general,suggesting that the public and the media are unaware of the risk of biological invasion.Effective management of invasive species requires the media clarifies the invasion risk of charismatic alien species.Promoting the unity between the harmfulness of abstract concept of alien species and the charisma of a specific alien species among the public help effective management.

Species’ geographical range, environmental range and traits lead to specimen collection preference of dominant plant species of grasslands in Northern China

Many different factors,such as species traits,socio-economic factors,geographical and environmental factors,can lead to specimen collection preference.This study aims to determine whether grassland specimen collection in China is preferred by species traits(i.e.,plant height,flowering and fruiting period),environmental range(i.e.,the temperature and precipitation range)and geographical range(i.e.,distribution range and altitudinal range).Ordinary least squares models and phylogenetic generalized linear mixed models were used to analyze the relationships between specimen number and the explanatory variables.Random Forest models were then used to find the most parsimonious multivariate model.The results showed that interannual variation in specimen number between 1900 and 2020 was considerable.Specimen number of these species in southeast China was notably lower than that in northwest China.Environmental range and geographical range of species had significant positive correlations with specimen number.In addition,there were relatively weak but significant associations between specimen number and species trait(i.e.,plant height and flowering and fruiting period).Random Forest models indicated that distribution range was the most important variable,followed by flowering and fruiting period,and altitudinal range.These findings suggest that future floristic surveys should pay more attention to species with small geographical range,narrow environmental range,short plant height,and short flowering and fruiting period.The correction of specimen collection preference will also make the results of species distribution model,species evolution and other works based on specimen data more accurate.

N-fixing tree species promote the chemical stability of soil organic carbon in subtropical plantations through increasing the relative contribution of plant-derived lipids

Biodiversity experiments have shown that soil organic carbon(SOC)is not only a function of plant diversity,but is also closely related to the nitrogen(N)-fixing plants.However,the effect of N-fixing trees on SOC chemical stability is still little known,especially with the compounding effects of tree species diversity.An experimental field manipulation was established in subtropical plantations of southern China to explore the impacts of tree species richness(i.e.,one,two,four and six tree species)and with/without N-fixing trees on SOC chemical stability,as indicated by the ratio of easily oxidized organic carbon to SOC(EOC/SOC).Plant-derived C components in terms of hydrolysable plant lipids and lignin phenols were isolated from soils for evaluating their relative contributions to SOC chemical stability.The results showed that N-fixing tree species rather than tree species richness had a significant effect on EOC/SOC.Hydrolysable plant lipids and lignin phenols were negatively correlated with EOC/SOC,while hydrolysable plant lipids contributed more to EOC/SOC than lignin phenols,especially in the occurrence of N-fixing trees.The presence of N-fixing tree species led to an increase in soil N availability and a decrease in fungal abundance,promoting the selective retention of certain key components of hydrolysable plant lipids,thus enhancing SOC chemical stability.These findings underpin the crucial role of N-fixing trees in shaping SOC chemical stability,and therefore,preferential selection of N-fixing tree species in mixed plantations is an appropriate silvicultural strategy to improve SOC chemical stability in subtropical plantations.

Biology of Flowering of Some Species of the Genus Phlomoides Moench

The article presents the biology of flowering and the daily dynamics of flowering of two species from the Lamiaceae family: ph. anisochila va ph. sogdiana of the distribution out in the Nuratau Mountains range.

Caulerpa J. V. Lamouroux (1809) (Chlorophyta: Bryopsidales) Species and Sites in Eastern Samar, Central Philippines

A descriptive survey was conducted in Eastern Samar to identify the Caulerpa species, sites where these species exhibit massive populations, and the most preferred edible species. Results revealed that only four of the eleven species, C. racemosa, C. lentillifera, C. chemnitzia var. peltata, and C. cylindracea, have massive populations;The four Caulerpa sites are the municipalities of Arteche, Guiuan, Salcedo (Matarinao Bay) and Quinapondan, and species C. racemosa, C. lentillifera, and C. chemnitzia var. peltata are most preferred edible species which are considered in the local diet. The study concludes that the distribution of Caulerpa in Eastern Samar is area-specific and should therefore be considered in resource planning and management, particularly in relation to aquaculture.

Shells in the cabinet:four new species of Tellinidae(Mollusca:Bivalvia:Tellinoidea)identified from existing South China Sea collections

Four species new to science were identified in the Tellinidae museum collections in the Marine Biological Museum of Chinese Academy of Sciences.Pinguitellina triquetra sp.nov.,collected in 1981,has not previously been described or reported.It differs from other Pinguitellina species by its trigonal shape,rose-colored valve interior,and deep and wide pallial sinus,which is confluent with the pallial line.Pinguitellina protuberangla sp.nov.has a broad and deep dorsal corner,short and straight posterodorsal margin,comparatively large adductor scars,depressed and fragile shells,and deep socket at the anterior edge of the right valve.Pinguitellina minuta sp.nov.was previously misidentified as Arcopella casta in China.It is a new species based on its unique characteristics,which include small,fragile,inflated,translucent,and triangularly ovate-shaped shells with acuminated and convex umboes.As the first species described in China within the genus Abranda Iredale,1924,Abranda xui sp.nov.has internal ligaments and thin,fragile,and translucent elliptical shells with fine radials on the surface.In this study,we reorganized the species currently contained in the two genera Pinguitellina and Abranda and created keys to the known species.We believe that numerous collected bivalve specimens have been overlooked in the South China Sea,and to date,mollusk has not been adequately sampled.Thus,further exploration and analysis are required to understand species diversity in this area.

Polypore funga and species diversity in tropical forest ecosystems of Africa,America and Asia,and a comparison with temperate and boreal regions of the Northern Hemisphere

Polypores play a cru cial role in energy recycling and forest regeneration in forest ecosystems.The majority of them are wood degraders;some are forest pathogens and others are ectomycorrhizal symbionts.The basidiocarps provide food and shelter for many organisms,mostly invertebrates,but also some vertebrates,as well as food and medicine for humans.Despite extensive research on the species diversity and phylogenetic relationships of polypores in recent years,there remains a lack of comprehensive understanding of their distribution patterns and species composition at the large scale.Checklists of polypores from the tropical zone,including tropical Africa,tropical America,and tropical Asia,were analyzed for species diversity,distribution patterns,major taxa,and nutritional modes.A total of 1,902 polypore species was found in the three regions,representing 8 orders,46families,and 250 genera of Agaricomycetes.The orders Polyporales(especially the family Polyporaceae)and Hymenochaetales(especially the family Hymenochaetaceae)had the most prolific taxa,with their species accounting for 93.4%of the total polypores listed.Each of 1,565(or 82.3%)of the total 1,902 species were found in only one of the three regions studied,and we treat them temporarily as"regional endemic species".Only 141species were shared among all three regions,accounting for a mere 7.4%.Tropical Africa and tropical America had the greatest number of shared species and the highest S?rensen similarity index(SC)value.Tropical forests had a higher species richness compared with temperate to boreal forests of the Northern Hemisphere,and in addition,also a higher proportion of white rot polypores compared to brown rot and ectomycorrhizal species.This study outlines the distribution patterns and species diversity of polypores in the world,shedding light on their ecological significance in diverse ecosystems.

Influence of ion species on extraction characteristicsof mixed ion beams

The spatial distributions of different kinds of ions are usually not completely the same in the process of extracting.In order to study the reason for the different characteristics of ion extraction, a simplified simulation model of Cu+ andCr+ ions extraction process was established by 2D3V (two-dimensional in space and three- dimensional in velocity space)particle-in-cell (PIC) method. The effects of different extraction voltages from 0 V to 500 V on the density distribution ofCu+ and Cr+ ions and the change of plasma emission surface were analyzed. On the basis of this model, the ion densitydistribution characteristics of Cu+ ions mixed with Li+, Mg+, K+, Fe+, Y+, Ag+, Xe+, Au+, and Pb+ ions respectivelyunder 200-V extraction voltage are further simulated, and it is revealed that the atomic mass of the ions is the key reason fordifferent ion density distributions when different kinds of ions are mixed and extracted, which provides support for furtherunderstanding of ion extraction characteristics.

Morphological and Molecular Data Revealed One New Species of the Short-legged Toads Brachytarsophrys Tian and Hu,1983(Anura,Megophryidae)from Yunnan,China

A new species of the genus Brachytarsophrys,named Brachytarsophrys wenshanensis sp.nov.,has been identified in southeastern Yunnan,China.This new species can be readily distinguished from other known congeners by both morphological criterion and molecular analysis of three mitochondrial gene segments:16S,COI,and Cytb.This classification is based on the following morphological characters:(1)medium body size(SVL 83.8–85.1 mm in two adult males);(2)enormous head,with head width nearly 1.2 times the length;(3)tongue pyriform,feebly notched;(4)non-meeting heels;(5)male lacking nuptial pad;(6)tibiotarsal articulation reaching angle of mouth when hindlimbs are extended forward alongside the body;(7)absence of outer metatarsal tubercle,inner metatarsal tubercle elliptic and approximately equal to first toe;(8)rudimentary toe webbing,webbing formula:Ⅰ(2–)–(2^(++))Ⅱ(2^(–))–(3^(++))Ⅲ(2^(½))–(4)Ⅳ(4^(+))–(2^(⅔))V;(9)lateral fringes narrow;(10)dermal ridge or glandular fold on dorsum absent;(11)pectoral glands distinct and irregular,femoral gland small.Our work increases the number of species within the genus Brachytarsophrys to 9.

A new species of Discostella guiyangensis sp.nov.(Bacillariophyta,Stephanodiscales)from Guiyang,China:morphology and phylogeny

We describe a new species of Discostella from Guiyang based on light and scanning electron microscopic observations,as well as molecular analysis.This species is morphologically distinguished from other species by a relatively smooth and slightly recessed central area with marginal striae of unequal lengths forked near the margin.Marginal fultoportulae and a single rimoportula are situated between every two costae or on the costae.Both morphological characters and the concatenated data of rbc L and SSU rDNA indicate that Discostella guiyangensis is a unique and new species.According to divergence time estimation analysis,Discostella guiyangensis is the oldest species among the Discostella species sequenced currently.In addition,we complement molecular data of Discostella asterocostata and Discostella stelligera.

Distribution and dynamics of niche and interspecific association of dominant phytoplankton species in the Feiyun River basin,Zhejiang,China

To investigate the dominant species and interspecific association in the phytoplankton community of the Feiyun River basin in Zhejiang Province,East China,the main stream and the Shanxi Zhaoshandu Reservoir in the downstream were chosen as the study area,for which 22 sampling sites were designated.Sampling was conducted in September 2021,January,May,and July 2022.Phytoplankton species were identified from both quantitative samples and in-vivo observations.Phytoplankton was quantified by direct counting.Results show that there were 98 species belonging to 6 phyla and 78 genera.In addition,to clarify the niches of the dominant phytoplankton species and their interspecific association,the dominance index was calculated,and a comprehensive analysis was conducted including niche width,niche overlap value,ecological response rate,overall association,chi-square test,and the stability.The phytoplankton community exhibited characteristics of a Cyanobacteria-Chlorophyta-Diatom type community,showing higher diversity in spring and lower diversity in summer.Among 11 dominants phytoplankton species from 3 phyla,both frequency and dominance degree varied seasonally,of which Microcystis sp.was the dominant species in Spring,Autumn,and Winter.The niche widths of the dominant species ranged from 0.234 to 0.933,and were categorized into three groups.The niche overlap values of the 11 dominant species ranged from 0.359 to 0.959,exhibiting significant seasonal differences-highest in winter followed by autumn,spring,and summer in turn.The overall correlation among dominant species in all four seasons revealed a non-significant negative association,resulting in an unstable community structure.A significant portion(84.2%)of species pairs displayed positive associations,suggesting a successional pattern where Diatoms dominated while other dominant species shared resources and space.Despite this pattern,stability measurements indicated that the dominant species community remained unstable.Therefore,careful monitoring is recommended for potential water environment issues arising from abnormal proliferation of dominant species in the watershed during winter.This research built a theoretical foundation with a data support to the early warning of eutrophication and provided a reference for water resources management in similar watersheds along the eastern coast of China.

Optimal Control for Age Distribution and Weighted Size Competitive Species in a Polluted Environment

In the paper,we study an optimal control for a system representing a competitive species model with fertility and mortality depending on a weighted size in a polluted environment.A fixed point theorem is applied to obtain the existence and uniqueness exhibited by a non-negative solution of above mentioned model.A maximum principle helps to carefully verify the existence of the optimal control policy,and tangent-normal cone techniques help to obtain the optimal condition specific to control issue.

The role of reactive oxygen species in gastric cancer

Gastric cancer(GC)ranks fifth in cancer incidence and fourth in cancer-related mortality worldwide.Reactive oxygen species(ROS)are highly oxidative oxygen-derived products that have crucial roles in cell signaling regulation and maintaining internal balance.ROS are closely associated with the occurrence,development,and treatment of GC.This review summarizes recent findings on the sources of ROS and the bidirectional regulatory effects on GC and discusses various treatment modalities for GC that are related to ROS induction.In addition,the regulation of ROS by natural small molecule compounds with the highest potential for development and applications in anti-GC research is summarized.The aim of the review is to accelerate the clinical application of modulating ROS levels as a therapeutic strategy for GC.

Reactive oxygen species and oxidative stress in acute pancreatitis:Pathogenesis and new therapeutic interventions

Acute pancreatitis(AP)is a common acute gastrointestinal disorder affecting approximately 20%of patients with systemic inflammatory responses that may cause pancreatic and peripancreatic fat necrosis.This condition often progresses to multiple organ failure,significantly increasing morbidity and mortality.Oxidative stress,characterized by an imbalance between the body’s reactive oxygen species(ROS)and antioxidants,activates the inflammatory signaling pathways.Although the pathogenesis of AP is not fully understood,ROS are increasingly recognized as critical in the disease's progression and development.Modulating the oxidative stress pathway has shown efficacy in mitigating the progression of AP.Despite numerous basic studies examining this pathway,comprehensive reviews of recent research remain sparse.This systematic review offers an in-depth examination of the critical role of oxidative stress in the pathogenesis and progression of AP and evaluates the therapeutic potential of antioxidant interventions in its management.