Characteristics of soil microbial community functional and structure diversity with coverage of Solidago Canadensis L

The relationship between Solidago canadensis L. invasion and soil microbial community diversity including functional and structure diversities was studied across the invasive gradients varying from 0 to 40%, 80%, and 100% coverage of Solidago canadensis L. using sole carbon source utilization profiles analyses, principle component analysis （PCA） and phospholipid fatty acids （PLFA） profiles analyses. The results show the characteristics of soil microbial community functional and structure diversity in invaded soils strongly changed by Solidago canadensis L. invasion. Solidago canadensis L. invasion tended to result in higher substrate richness, and functional diversity. As compared to the native and ecotones, average utilization of specific substrate guilds of soil microbe was the highest in Solidago canadensis L. monoculture. Soil microbial functional diversity in Solidago canadensis L. monoculture was distinctly separated from the native area and the ecotones. Aerobic bacteria, fungi and actinomycetes population significantly increased but anaerobic bacteria decreased in the soil with Solidago canadensis L. monoculture. The ratio of cyl9：0 to 18：1 co7 gradually declined but mono/sat and fung/bact PLFAs increased when Solidago canadensis L. became more dominant. The microbial community composition clearly separated the native soil from the invaded soils by PCA analysis, especially 18： lco7c, 16： lco7t, 16： lco5c and 18：2co6, 9 were present in higher concentrations for exotic soil. In conclusion, Solidago canadensis L. invasion could create better soil conditions by improving soil microbial community structure and functional diversity, which in turn was more conducive to the growth ofSolidago canadensis L.

Wheat, maize and sunflower cropping systems selectively influence bacteria community structure and diversity in their and succeeding crop's rhizosphere

supported by the Special Fund for Agro-scientific Research in the Public Interest in China （201103001）

Tree species diversity and stand structure along major community types in lowland primary and secondary moist deciduous forests in Tripura,Northeast India

Tree species diversity and population structure at different community types were described and analyzed for primary and secondary lowland moist deciduous forests in Tripura. Overall 10,957 individual trees belonging to 46 family, 103 genera and 144 species were counted at ≥30 cm DBH （diameter at breast height） using 28 permanent belt transects with a size of 1 ha （10 m × 1000 m）. Four different tree communities were identified. The primary forests was dominated by Shorea robusta （mean density 464.77 trees.ha^-1, 105 species） and Schima wallichii （336.25 trees.ha^-1, 82 species）, while the secondary forests was dominated by Tectona grandis （333.88 trees.ha^-1, 105 species） and Hevea brasiliensis （299.67 trees.ha^-1, 82 species）. Overall mean basal area in this study was 18.01m2.ha^-1; the maximum value was recorded in primary Shorea forest （26.21 m2.ha^-1）. Mean density and diversity indices were differed significantly within four different communities. No significant differences were observed in number of species, genera, family and tree basal cover area. Significant relationships were found between the species richness and different tree population groups across the communities. Results revealed that species diversity and density were increased in those forests due to past disturbances which resulted in slow accumu- lation of native oligarchic small tree species. Seventeen species were recorded with 〈2 individuals of which Saraca asoka （Roxb.） de Wilde and Entada phaseoloides （L.） Men＇. etc. extensively used in local ethnomedicinal formulations. The present S. robusta Gaertn dominated forest was recorded richer （105 species） than other reported studies. Moraceae was found more speciose family instead of Papilionaceae and Euphorbiaceae than other Indian moist deciduous forests. Seasonal phenological gap in such moist deciduous forests influenced the population of Trachypithecus pileatus and capped langur. The analysis of FIV suggested a slow trend of shifting the population of Lamiaceae group by Moraceae species in secondary T. grandis L. dominated community.

Genetic Diversity and Population Structure in Landraces and Improved Rice Varieties from India

A set of 50 rice genotypes comprising landraces, local selections, and improved varieties were characterized using simple sequence repeat（SSR） and inter simple sequence repeat（ISSR） markers to study genetic diversity and population structure. Following unweighted pair group method with arithmetic mean based clustering using binary data of polymorphic markers, the genotypes were grouped into 5 clusters and 11 sub-clusters, whereas population structure analysis separated 50 rice genotypes into 5 sub-populations. Grouping of rice genotypes showed better resemblance with the pedigree information of the genotypes. Both genetic diversity and population structure analysis separated majority of the improved varieties from landraces and local selections. Some of the SSR markers amplified unique alleles which were specific to a particular genotype and could distinguish them from the rest. The results indicate that these rice genotypes exhibit a higher genetic diversity and can be very useful in rice improvement program.

Structure of Allozymatic Diversity of Ten Temperate and Adapted Exotic Breeding Populations of Maize (Zea mays L.)

Ten temperate and adapted exotic breeding populations of maize were studied with electrophoretic techniques. Three isozyme systems coded by nine allozyme loci were used for evaluating the genetic variability within and among populations. The results revealed that 78.57% of allozyme loci were polymorphic. Low allelic variation with a mean number of 1.84 alleles per locus per population was detected. But, these populations still maintained higher level of heterozygosity; moreover, the exotic populations had greater gene diversity than the temperate populations. All the populations were non-panmictic with negative Wright＇s fixation indexes （-0.091— -0.424）. The tropical BS 16 was typified by maximum allelic richness, percent of polymorphic loci and heterozygosity. More than 93% of the gene diversity maintained within populations, and the genetic differentiation among populations was low （0.002—0.191）. Multivariate analysis demonstrated that the tropical BS29 diverged from other populations in the reverse direction. The temperate BS9 and tropical BS16 were divergent each other, and highly differentiated from other temperate and tropical populations, consequently, these two populations would be analogically postulated as potential germplasms to establish new heterotic groups for temperate maize breeding programs.

Quantifying forest structural diversity based on large-scale inventory data:a new approach to support biodiversity monitoring

Background: The importance of structurally diverse forests for the conservation of biodiversity and provision of a wide range of ecosystem services has been widely recognised. However, tools to quantify structural diversity of forests in an objective and quantitative way across many forest types and sites are still needed, for example to support biodiversity monitoring. The existing approaches to quantify forest structural diversity are based on small geographical regions or single forest types, typically using only small data sets.Results: Here we developed an index of structural diversity based on National Forest Inventory(NFI) data of BadenWurttemberg, Germany, a state with 1.3 million ha of diverse forest types in different ownerships. Based on a literature review, 11 aspects of structural diversity were identified a priori as crucially important to describe structural diversity. An initial comprehensive list of 52 variables derived from National Forest Inventory(NFI) data related to structural diversity was reduced by applying five selection criteria to arrive at one variable for each aspect of structural diversity. These variables comprise 1) quadratic mean diameter at breast height(DBH), 2) standard deviation of DBH, 3) standard deviation of stand height, 4) number of decay classes, 5) bark-diversity index, 6) trees with DBH ≥ 40 cm, 7) diversity of flowering and fructification, 8) average mean diameter of downed deadwood, 9) mean DBH of standing deadwood, 10) tree species richness and 11) tree species richness in the regeneration layer. These variables were combined into a simple,additive index to quantify the level of structural diversity, which assumes values between 0 and 1. We applied this index in an exemplary way to broad forest categories and ownerships to assess its feasibility to analyse structural diversity in large-scale forest inventories.Conclusions: The forest structure index presented here can be derived in a similar way from standard inventory variables for most other large-scale forest inventories to provide important information about biodiversity relevant forest conditions and thus provide an evidence-base for forest management and planning as well as reporting.

Information Entropy Measures for Stand Structural Diversity:Joint Entropy

Structural diversity is the key attribute of a stand. A set of biodiversity measures in ecology was introduced in forest management for describing stand structure, of which Shannon information entropy (Shannon index) has been the most widely used measure of species diversity. It is generally thought that tree size diversity could serve as a good proxy for height diversity. However, tree size diversity and height diversity for stand structure is not completely consistent. Stand diameter cannot reflect height information completely. Either tree size diversity or height diversity is one-dimensional information entropy measure. This paper discussed the method of multiple-dimensional information entropy measure with the concept of joint entropy. It is suggested that joint entropy is a good measure for describing overall stand structural diversity.

Comparison of satellite images with different spatial resolutions to estimate stand structural diversity in urban forests

The structural diversity in urban forests is highly important to protect biodiversity. In particular, fruit trees and bush species, cavity-bearing trees and coarse, woody debris provide habitats for animals to feed, nest and hide. Improper silvicultural practices, intensive recreational use and illegal harvesting lead to a decline in the structural diversity in forests within larger metropolitan cities. It is important to monitor the structural diversity at definite time intervals using effective technologies with a view to instituting the necessary conservation measures. The use of satellite images seems to be appropriate to this end. Here we aimed to identify the associations between the textural features derived from the satellite images with different spatial resolutions and the structural diversity indices in urban forest stands (Shannon-Wiener index, complexity index, dominance index and density of wildlife trees). RapidEye images with a spatial resolution of 5 m × 5 m, ASTER images with a spatial resolution of 15 m × 15 m and Landsat-8 ETM satellite images with a spatial resolution of 30 m × 30 m were used in this study. The first-order (standard deviation of gray levels) and second order (GLCM entropy, GLCM contrast and GLCM correlation) textural features were calculated from the satellite images. When associations between textural features in the images and the structural diversity indices were assessed using the Pearson correlation coefficient, very high associations were found between the image textural features and the diversity indices. The highest association was found between the standard deviation of gray levels (SDGLRAP) derived from RVIRAP of RapidEye image and the Shannon-Wiener index (H h) calculated on the basis of tree height (R 2 = 0.64). The findings revealed that RapidEye satellite images with a spatial resolution of 5 m × 5 m are most suitable for estimating the structural diversity in urban forests.

Genetic diversity of pepper(Capsicum spp.) germplasm resources in China reflects selection for cultivar types and spatial distribution

Pepper（Capsicum spp.） is an important vegetable crop in the world. Now the pepper in China contributes one-third of the world＇s peppers production. Genetic diversity of the pepper germplasm of China is expected interesting to know. To explore the structure of genetic diversity in Chinese pepper germplasm resources and possible relationship with cultivar types or geographic origin, we sampled and compared 372 Gen Bank pepper accessions（local cultivars and landraces） from 31 provinces, autonomous regions and municipalities of China and 31 additional accessions from other countries. These accessions were genotyped using 28 simple sequence repeat（SSR） markers spanning the entire pepper genome. We then investigated the genetic structure of the sampled collection using model-based analysis in STRUCTURE v2.3.4 and examined genetic relationships by the unweighted pair-group method of mathematical averages（UPGMA） in MEGA. In addition to geographic origin, we evaluated eight plant and fruit traits. In total, 363 alleles were amplified using the 28 SSR primers. Gene diversity, polymorphism information content and heterozygosity of the 28 SSR loci were estimated as 0.09–0.92, 0.08–0.92 and 0.01–0.34, respectively. The UPGMA cluster analysis clearly distinguished Capsicum annuum L. from other cultivated pepper species. Population structure analysis of the 368 C. annuum accessions uncovered three genetic groups which also corresponded to distinct cultivar types with respect to the plant and fruit descriptors. The genetic structure was also related to the geographic origin of the landraces. Overall results indicate that genetic diversity of Chinese pepper landraces were structured by migration of genotypes followed by human selection for cultivar types in agreement with consumption modes and adaptation to the highly diversified agro-climatic conditions.

Structural Diversity and Luminescent Properties of Metal-organic Frameworks Based on a Rare Sulfonate and Imidazole Co-Ligand System

Four types of luminescent properties of metal-organic frameworks（MOFs） with formulas [Cd（1,2-BIYB）2（H2O）2]n·n（AQ-1,5-DAD）（1）, [Cd（AQ-1,5-DAD）（1,3-BIYB）2]n（2）, [Cd（1,3-BIYB）]n·n（AQ-1,5-DAD）·n H2O（3）, and [Zn（1,4-BIYB）2]n·n（AQ-1,5-DAD）2·6H2O（4）,（Na2AQ-1,5-DAD = anthraquinone-1,5-disulfonic acid disodium, 1,2-BIYB = 1,2-bis（imidazol-1-ylmethyl）benzene, 1,3-BIYB = 1,3-bis（imidazol-1-ylmethyl）benzene, 1,4-BIYB = 1,4-bis（imidazol-1-ylmethyl）benzene） have been synthesized based on a rare sulfonate and imidazole Co-ligand system under different conditions. The structural features of four types of MOFs 1-4 are as follows： MOFs 1 show a 3D supramolecular compound in which the double one-dimensional chains are further cross-linked by hydrogen bonds. 2 exhibits a 2D network constructed by two different 1D chains. 3 features a 2D supramolecular network, in which the 1D chains and AQ-1,5-DAD are arranged alternately through hydrogen bonds. 4 posseses a 3D supramolecular structure constructed by a 2D network and one-dimensional hydrogen bonding chains. All compounds 1-4 are characterized by elemental analysis, infrared spectroscopy, and thermogravimetric analysis. The luminescence properties of 1-4 have been investigated.

Structural Diversity and Photoluminescent Properties of Two Mn(Ⅱ) Sulfoterephthalate Complexes from Multi-pyridine N-containing Ligands

Solvothermal reaction of manganese（II） salt with monosodium 2-sulfoterephthalate（2-NaH2stp） and two multi-pyridine N-containing auxiliary ligands results in the formation of two new complexes formulated with [Mn2（Hstp）2（bpp）2（H2O）4]（1） and [Mn3（stp）2（tpy）3（H2O）]（H2O）5（2）（bpp = benz-2,3-pyrimidine-[2,3-f]-1,10-phenanthroline, tpy = 2,2＇：6＇,2＇＇-terpyridine）. X-ray diffraction structural analyses of two complexes reveal their structural diversity（0D and 1D） due to the difference of auxiliary ligands. 1 is a discrete structure, in which the Mn（Ⅱ） ion is hexa-coordinated with one stp, one bpp ligand and two water molecules. Complex 2 is a one-dimensional（1D） chain-like structure with three crystallographically independent Mn（Ⅱ） ions. The photoluminescent properties could be assigned to the π-π＊ transition of 2-sulfoterephthalate ligands.

Comparison of structural diversity of tree-crop associations in Peripheral and Buffer zones of Gachabari Sal forest area,Bangladesh

The structural diversity of different tree-crop associations were studied at Gachabari Sal forest area of Madhupur Garh on Buffer and Peripheral Zone during 2006. The total density, basal area of trees in the Buffer and Peripheral Zone were 155.5 trees·hm^(-2), 795.4 trees·hm^(-2) and 3.9 m2·hm-2, 5.8 m^2·hm^(-2), respectively. No regeneration and natural trees were found in Peripheral Zone and the Zone is totally occupied by exotic species where the Buffer Zone comprised of both natural and exotic trees. The Peripheral Zone belonged to younger and smaller trees whereas the Buffer Zone belonged to mixture of smaller, taller, younger and mature trees simultaneously. For the practicing of different agroforestry systems both Zones have lost their original characters of Sal forest.

Comparison of structural diversity of tree-crop associations in Periph- eral and Buffer zones of Gachabari Sal forest area, Bangladesh

The original version of this article unfortunately contained three mistakes. （1） The spelling of the [A. Nishad＇] name was incorrect. The corrected spelling is given below.

Diverse atomic structure configurations of metal-doped transition metal dichalcogenides for enhancing hydrogen evolution

Doping foreign metal atoms into the substrate of transition metal dichalcogenides(TMDs)enables the formation of diverse atomic structure configurations,including isolated atoms,chains,and clusters.Therefore,it is very important to reasonably control the atomic structure and determine the structure-activity relationship between the atomic configurations and the hydrogen evolution reaction(HER)performance.Although numerous studies have indicated that doping can yield diverse atomic structure configurations,there remains an incomplete understanding of the relationship between atomic configurations within the lattice of TMDs and their performance.Here,diverse atomic structure configurations of adsorptive doping,substitutional doping,and TMDs alloys are summarized.The structure-activity relationship between different atomic configurations and HER performance can be determined by micro-nanostructure devices and density functional theory(DFT)calculations.These diverse atomic structure configurations are of great significance for activating the inert basal plane of TMDs and improving the catalytic activity of HER.Finally,we have summarized the current challenges and future opportunities,offering new perspectives for the design of highly active and stable metal-doped TMDs catalysts.

Generalized chaos synchronization of a weighted complex network with different nodes

This paper proposes a method of realizing generalized chaos synchronization of a weighted complex network with different nodes. Chaotic systems with diverse structures are taken as the nodes of the complex dynamical network, the nonlinear terms of the systems are taken as coupling functions, and the relations among the nodes are built through weighted connections. The structure of the coupling functions between the connected nodes is obtained based on Lyapunov stability theory. A complex network with nodes of Lorenz system, Coullet system, RSssler system and the New system is taken as an example for simulation study and the results show that generalized chaos synchronization exists in the whole weighted complex network with different nodes when the coupling strength among the nodes is given with any weight value. The method can be used in realizing generalized chaos synchronization of a weighted complex network with different nodes. Furthermore, both the weight value of the coupling strength among the nodes and the number of the nodes have no effect on the stability of synchronization in the whole complex network.

National Forest Inventories capture the multifunctionality of managed forests in Germany

Background:Forests perform various important ecosystem functions that contribute to ecosystem services.In many parts of the world,forest management has shifted from a focus on timber production to multi-purpose forestry,combining timber production with the supply of other forest ecosystem services.However,it is unclear which forest types provide which ecosystem services and to what extent forests primarily managed for timber already supply multiple ecosystem services.Based on a comprehensive dataset collected across 150 forest plots in three regions differing in management intensity and species composition,we develop models to predict the potential supply of 13 ecosystem services.We use those models to assess the level of multifunctionality of managed forests at the national level using national forest inventory data.Results:Looking at the potential supply of ecosystem services,we found trade-offs(e.g.between both bark beetle control or dung decomposition and both productivity or soil carbon stocks)as well as synergies(e.g.for temperature regulation,carbon storage and culturally interesting plants)across the 53 most dominant forest types in Germany.No single forest type provided all ecosystem services equally.Some ecosystem services showed comparable levels across forest types(e.g.decomposition or richness of saprotrophs),while others varied strongly,depending on forest structural attributes(e.g.phosphorous availability or cover of edible plants)or tree species composition(e.g.potential nitrification activity).Variability in potential supply of ecosystem services was only to a lesser extent driven by environmental conditions.However,the geographic variation in ecosystem function supply across Germany was closely linked with the distribution of main tree species.Conclusions:Our results show that forest multifunctionality is limited to subsets of ecosystem services.The importance of tree species composition highlights that a lack of multifunctionality at the stand level can be compensated by managing forests at the landscape level,when stands of complementary forest types are combined.These results imply that multi-purpose forestry should be based on a variety of forest types requiring coordinated planning across larger spatial scales.

Effects of human disturbance on liana community diversity and structure in a tropical rainforest, Malaysia: implication for conservation

Aim Due to the important role of lianas in the functioning of forest ecosystem,knowledge of the factors that affect them are important in the management of forests.Currently,there are conflicting reports on the response of liana communities to disturbance,calling for more research in the area.The present study was carried out to investigate the response of liana diversity and structure to human disturbance within two major forests in the Penang National Park,Malaysia.The study also looked at the implication of the findings for conservation.Methods A total of 15 40×40-m^(2)(or 40-m×40-m)plots each were randomly located across a range of habitats in a primary forest and disturbed secondary forest.Trees with diameter at breast height≥10 cm were examined for lianas with diameter≥2 cm.Both lianas and trees were enumerated and compared between the two forests.Diversity and structural variables of lianas were compared between the two forests using the t-test analysis.Tree abundance was also compared between the two forests with t-test,while linear regression analysis was run to determine the effects of tree abundance on liana abundance.Important Findings A total of 46 liana species belonging to 27 genera and 15 families were identified in the study.Human disturbance significantly reduced liana species richness and species diversity in the secondary forest.Liana abundance remained the same in both forests whereas liana basal area was;7 times higher in the primary forest.Twiners and hook climbers were significantly more abundant in the primary and secondary forest,respectively.Large diameter lianas were more abundant in the primary forest compared with the secondary forest.The diameter distribution of most families in the primary forest followed the inverted J-shaped curve whereas only a few of the families in the secondary forest did so.Tree abundance was significantly higher in the primary forest.The abundance of lianas significantly depended on tree abundance in all the forests.The study has provided evidence of negative effects of human disturbance on liana diversity and structure that does not auger well for biodiversity in the forest.In view of the critical role of lianas in maintaining biodiversity in the forest ecosystem,lianas in the national park should be protected from further exploitation.

Development and applications of functional gene microarrays in the analysis of the functional diversity,composition,and structure of microbial communities

Functional gene arrays(FGAs)are a special type of microarrays containing probes for key genes involved in microbial functional processes,such as biogeochemical cycling of carbon,nitrogen,sulfur,phosphorus,and metals,biodegradation of environmental contaminants,energy processing,and stress responses.GeoChips are considered as the most comprehensive FGAs.Experimentally established probe design criteria and a computational pipeline integrating sequence retrieval,probe design and verification,array construction,data analysis,and automatic update are used to develop the GeoChip technology.GeoChip has been systematically evaluated and demonstrated to be a powerful tool for rapid,specific,sensitive,and quantitative analysis of microbial communities in a high-throughput manner.Several generations of GeoChip have been developed and applied to investigate the functional diversity,composition,structure,function,and dynamics of a variety of microbial communities from different habitats,such as water,soil,marine,bioreactor,human microbiome,and extreme ecosystems.GeoChip is able to address fundamental questions related to global change,bioenergy,bioremediation,agricultural operation,land use,human health,environmental restoration,and ecological theories and to link the microbial community structure to environmental factors and ecosystem functioning.

Low diversity,little genetic structure but no inbreeding in a high-density island endemic pit-viper Gloydius shedaoensis

Island species and their ecosystems play an important role in global biodiversity preservation,and many vulnerable island species are conservation priorities.Although insular habitat likely facilitates the species diversification process,it may also aggravate the fragility of these species with high risk of inbreeding.The Shedao pit-viper Gloydius shedaoensis is an island endemic species with an extremely high population density,which has been categorized as vulnerable in the IUCN(International Union for the Conservation of Nature and Natural Resources)Red List.We collected 13,148 SNP(Single Nucleotide Polymorphism)from across its genome and examined its genetic diversity and demographic history.The Shedao pit-viper has a low genetic diversity but shows no sign of inbreeding.Furthermore,population genetic structure analysis,including the neighbor-joining tree,principal coordinate analysis,clustering,and spatial autocorrelation,revealed a general lack of spatial structure.Only the isolation by distance residues suggested a weak patchiness.Overall,the population is nearly panmictic and gene flow is evenly distributed across the island.A large number of individuals,small size of the island,and the lack of population structure likely all contribute to the lack of inbreeding in this species.We also detected signs of male-biased dispersal,which likely is another inbreeding avoidance strategy.Historical demographic analysis suggested that the historical population size and distribution of the species are much larger than their current ones.The multiple transgressive–regressive events since the Late Pleistocene are likely the main cause of the population size changes.Taken together,our results provide a basic scientific foundation for the conservation of this interesting and important species.

Informative ISSR Markers Help Identify Genetically Distinct Accessions of Oryza rufipogon in Yield Improvement

Inter simple sequence repeat（ISSR） polymorphism was used to determine genetic diversity and phylogenetic relationships in 90 genotypes of wild and cultivated species of Oryza from different geographical regions of the world. In all the 17 primers used in ISSR-PCR, a total of 11 464 bands were amplified at 253 band positions/loci. The primer UBC-809 amplified the maximum bands（1 059） at 21 band positions. UBC-810 and UBC-835 amplified the minimum of 391 bands each at 7 and 14 band positions, respectively. The mean polymorphism information content ranged from 0.44 to 0.84 and resolving power ranged from 8.69 to 23.53. Un-weighted pair group method with arithmetic mean dendrogram and population structure based on the 17 primers separated all genotypes into 4 major clusters with a genetic similarity of 53%–100%. The first two clusters consisted of 30 O. rufipogon accessions each. In the third cluster, O. nivara and O. longistaminata grouped as one sub-cluster and all other O. nivara accessions and cultivars grouped as another sub-cluster. The fourth cluster had only five O. rufipogon accessions which can be a source of new genes. Four sub-populations were identified within O. rufipogon and two sub-populations within O. nivara at K = 7. A subset of six primers with high resolving power values were the most informative and grouped all genotypes almost similarly as the 17 primers did. Use of these six highly informative primers in ISSR-PCR is a cost effective and robust method for assessing genetic diversity in large germplasm collections of wild rice species.