Submergence is a serious environmental condition that causes large loss in rice production in rain fed lowland and flood affected area. This study evaluated morphological and physiological responses of rice roots to s...Submergence is a serious environmental condition that causes large loss in rice production in rain fed lowland and flood affected area. This study evaluated morphological and physiological responses of rice roots to submergence using two tolerant rice genotypes FR13A and Swarna-Sub 1 and two sensitive ones Swarna and IR42. The tolerant genotypes had higher survival rate and less shoot elongation but greater root elongation during submergence than the sensitive ones. After submergence,the tolerant genotypes also had higher root dry weight and more active roots than the sensitive ones.Tolerant genotypes exhibited less root injury, with less malondialdehyde production and slower electrolyte leakage after submergence. Tolerant genotypes also maintained higher concentrations of soluble sugar and starch in roots and shoots and higher chlorophyll retention after submergence than the sensitive ones.Our data showed that root traits such as root activity and root growth are associated with survival rate after submergence. This is probably accomplished through higher energy supply, and membrane integrity is necessary to preserve root function and reduce injury during submergence. These root traits are important for submergence tolerance in rice.展开更多
The present investigation embodies with some distinct physiological responses of rice seedlings bearing sub1A allele when cultured under soil moisture deficit condition. In order to estimate the extent of variation of...The present investigation embodies with some distinct physiological responses of rice seedlings bearing sub1A allele when cultured under soil moisture deficit condition. In order to estimate the extent of variation of sub1A allele in cv. Swarna Sub1, few specific responses were recorded. Ongoing days (2, 4 and 8) of water stress, rice seedlings were mostly concerned with regulation of root growth through 1.24%, 4.10% and 8.96% as compared to control. When relative growth rate (RGR) of the biomass was considered, it recorded a significant down regulation maximum by 27.27% over non-stressed plants. The light absorbing capacity of foliages in terms of leaf mass ratio (15.62%) and specific leaf weight (8.45%) was also curtailed under stress contiguously with total dry matter accumulation. For light harnessing mechanism, the contributing pigments were most significantly (p ≤ 0.05) affected with maximum variation for chlorophyll (31.29%), lycopene (79.31%) and carotenoids (55.31%) over control. NAR was strikingly differed by 32.72% under water stress in average. To support the water stress related depletion of moisture tension, plants recorded RWC with a ranges of 6.62% to 21.57% under stress than control. In balance of cellular dehydration rice seedlings were recorded 6.72% loss of proline, but up-regulated the release of free amino acids by 1.35 fold. In expression of generic potential for sub1A allele, the growth inhibition even under water deficit was evident from carbohydrate depletion by 10.93%, 11.42% and 24.35% through days of treatments. This was supported by depletion of apoplastic and cellular invertase activities by 90.90% and 72.91%. The possibility for sub1A in tolerance of deficit water status in rice culture has been discussed in more details.展开更多
Flooding is one of the most hazardous natural disasters and a major stress constraint to rice production throughout the world,which results in huge economic loss.Approximately one-fourth of the global rice crops(appro...Flooding is one of the most hazardous natural disasters and a major stress constraint to rice production throughout the world,which results in huge economic loss.Approximately one-fourth of the global rice crops(approximately 40 million hectares)are grown in rainfed lowland plots that are prone to seasonal flooding.A great progress has been made during last two decades in our understanding of the mechanisms involved in adaptation and tolerance to flooding/submergence in rice.In this review,we summarized the physiological and molecular mechanisms that contribute to tolerance of flooding/submergence in rice.We also covered various features of flooding stress with special reference to rice plants,viz.different types of flooding stress,environmental characterisation of flood water,impact of flooding stress on rice plant and their morphological,physiological and metabolic responses under flooding.A brief discussion on the tolerance mechanism in rice exhibited to different types of flooding will be focused for the future crop improvement programme for development of flooding tolerant rice variety.展开更多
Farmers in South East Asia are adopting rice crop establishment methods from transplanting to direct wet or dry seeding as it requires less labour and time and comparatively less energy than transplanting. In contrast...Farmers in South East Asia are adopting rice crop establishment methods from transplanting to direct wet or dry seeding as it requires less labour and time and comparatively less energy than transplanting. In contrast to irrigated condition, in rainfed lowland, direct seeding is a common practice. Early flooding controls weeds but decreases seedling establishment in direct seeded rice. Anaerobic germination is an important trait to counteract damages caused by early flooding. Management options which can help in crop establishment and improve crop growth under flooding might remove the constraints related to direct seeding. The investigation was carried out with two near isogenic lines Swarna and Swarna- Sub1. Swarna-Subl is tolerant to submergence whereas Swarna is susceptible. Seed priming was done with water and 2% Jamun （Syzygium cumini） leaf extract, and it improved seedling establishment under flooding. Acceleration of growth occurred due to seed pretreatment, which resulted longer seedling and greater accumulation of biomass. Seed priming greatly hastened the activities of total amylase and alcohol dehydrogenase in Swarna-Subl than in Swarna. Swarna-Subl outperformed Swarna when the plants were cultivated under flooding. Weed biomass decreased significantly under flooding compared to non-flooding conditions. Seed priming had positive effects on yield and yield attributing parameters both under non-flooding and early flooding conditions.展开更多
The present study evaluated submergence responses in 88 lowland indigenous rice(Oryza sativa L.) landraces from Koraput, India, to identify submergence-tolerant rice genotypes. In pot experiments, variations in surviv...The present study evaluated submergence responses in 88 lowland indigenous rice(Oryza sativa L.) landraces from Koraput, India, to identify submergence-tolerant rice genotypes. In pot experiments, variations in survival rate, shoot elongation, relative growth index, dry matter, chlorophyll, soluble sugar and starch contents were evaluated in two consecutive years under well-drained and completely submerged conditions. Principal component analysis showed that the first three axes contributed 96.820% of the total variation among the landraces, indicating wide variation between genotypes. Major traits such as survival rate, relative growth index, soluble sugar and starch contents appeared to be important determinants of phenotypic diversity among the landraces. Phenotypic coefficient of variance was higher than genotypic coefficient of variance for all the traits and all showed high heritability(90.38%–99.54%). Five rice landraces(Samudrabali, Basnamundi, Gadaba, Surudaka and Dokarakuji) were the most tolerant to submergence. When submerged for up to 14d, Samudrabali, Basnamundi and Godoba were notable for having greater survival rates than a standard submergence tolerant variety FR13 A, and also notable for elongating more vigorously and accumulating more biomass. These three landraces may therefore be especially useful in lowland rice growing areas that are affected by both moderate stagnant water and flash flooding. Molecular genotyping revealed that the submergence tolerance of Samudrabali, Basnamundi and Godoba is linked to the presence of one or more different Sub1 loci and it may well prove useful for breeding improved submergence tolerant rice varieties, thereby assising to improve yield stability in the rainfed lowland agro-ecosystem.展开更多
In the present study a group of four indigenous and less popular rice genotypes (Meghi, Panibhasha, Jabra and Sholey) reported by growers as submergence tolerant lines from flood prone areas of south Bengal were explo...In the present study a group of four indigenous and less popular rice genotypes (Meghi, Panibhasha, Jabra and Sholey) reported by growers as submergence tolerant lines from flood prone areas of south Bengal were explored through study of nodal anatomy, physio-biochemical screening under submergence and genotyping with submergence tolerance linked rice microsatellite loci (RM loci). To identify the different allelic forms of different Sub1 compnents (Sub1A, Sub1B and Sub1C) among the studied lines, the genomic DNA of individual genotypes was amplified with three ethylene response factor like genes from Sub1 loci, located on rice chromosome 9. From the different physio-biochemical experiments performed in this investigation, it has been shown that Meghi and Jabra are the two probable potent genotypes which share common properties of both submergence tolerant and deep water nature whereas rest two genotypes (Sholey and Panibhasha) behave like typical deep water rice. The submergence tolerance property of Meghi was also confirmed from submergence tolerance linked SSR based genotyping by sharing with FR13A for some common alleles as reflected in fingerprint derived dendrogram. The rest of the genotypes shared a number of alleles and were included in a separate cluster. The common behaviour of Meghi and FR13A under submergence was also confirmed from genetic study of Sub1 loci through sharing of some common alleles for three Sub1 components (Sub1A, Sub1B and Sub1C loci). One SSR loci (RM 285) was identified as a potent molecular marker for submergence tolerance breeding programme involving these two selected rice lines (Meghi and Jabra) as donor plant through marker assisted selection.展开更多
Single nucleotide polymorphisms and restriction digestion-based haplotype variations among 160 flood prone rice varieties were analyzed with enzymes Alu I and Cac8 I to generate polymorphisms at Sub1A and Sub1C loci ...Single nucleotide polymorphisms and restriction digestion-based haplotype variations among 160 flood prone rice varieties were analyzed with enzymes Alu I and Cac8 I to generate polymorphisms at Sub1A and Sub1C loci （conferring submergence tolerance）, respectively. Haplotype associated with phenotype was used to study the haplotype variations at Sub1A and Sub1C loci and to determine their functional influence on submergence tolerance and stem elongation. Three patterns at Sub1A locus, Sub1A0 （null allele）, Sub1A1 （does not cut） and Sub1A2 （one SNP）, and four patterns at Sub1C locus, Sub1C1, Sub1C2, Sub1C3 and Sub1C4, were generated. Both tolerant Sub1A1 and intolerant Sub1A2 had the same length, but the difference was presence of a restriction site in the Sub1A2, but absent at the Sub1A1. Further, two types of polymorphism were detected at the Sub1C, one included major length polymorphisms （165, 170 and 175 bp） and the other was a single restriction site at different position. Eight haplotypes （different combinations of the two loci）, A1C1, A1C2, A1C4, A2C2, A2C4, A0C2, A0C3 and A0C4, were detected among 160 varieties. Haplotype A1C1 was comparatively more related to haplotypes A1C2 and A1C4, having the same Sub1A allele, and these haplotypes were found only in Bangladeshi, Sri Lankan and Indian varieties. Most tolerant varieties in A1C1 haplotype showed slow elongation, having tolerant specific Sub1A1 and Sub1C1 alleles. Further, the varieties Madabaru and Kottamali （A2C2） also showed moderate level of tolerance without Sub1A1 allele. These varieties were different with FR13A and also suspected to carry different novel tolerant genes at other loci. These materials could be used for hybridization with Sub1 varieties for pyramiding additional tolerant specific alleles into a single genotype for improving submergence tolerance in rice.展开更多
Reasonable ＂eco-city＂in the external between urban and rural areas should make a complete ecological cycle of the system, so that the internal energy efficiency and low pollution, resource use environmentally clean,...Reasonable ＂eco-city＂in the external between urban and rural areas should make a complete ecological cycle of the system, so that the internal energy efficiency and low pollution, resource use environmentally clean, quiet comfortable life of the people, as well as other elements of the organic： unity of urban greening. So, ＂Eco-City＂, ＂urban ecology＂ are two heterogeneous areas should be treated differently. However, in rural and urban dualistic situation, China advocated ＂ecological city＂ ignored the rural ecological balance, resulting in ＂eco-city＂development directly into＂ urban ecology＂ construction within the city along with the waste of resources, water pollution, serious problems of air pollution, noise pollution, the deep ＂eco-city＂ into representation＂ urban ecology＂, in the standard does not cover up the sound, making the generation between rural and urban＂ material Rift ,＂after all ,can not be filled.展开更多
Floods have now become most detrimental natural catastrophe worldwide due to radical climatic fluxes. Therefore, there is a dire necessity to develop a high yielding rice lines to deal with this scenario. For this pur...Floods have now become most detrimental natural catastrophe worldwide due to radical climatic fluxes. Therefore, there is a dire necessity to develop a high yielding rice lines to deal with this scenario. For this purpose, a large scale experiment was conducted including one hundred and fifteen (115) rice genotypes having SUB1 gene imported from International Rice Research Institute (IRRI) Philippines, six local cultivars/approved varieties and three high yielding rice varieties i.e. Sabitri, IR6 and NSICRC222 being used as potential varieties in different countries of Asia as susceptible check and IR64-SUB1 as tolerant check. The genotypic screening was performed using two PCR-based DNA markers i.e. ART5 and SC3. Phenotypic screening was conducted in a natural pond to assess the interaction of SUB1 gene in natural stagnant flood water as well as the suitability of introgression of SUB1 gene into approved varieties and elite rice lines. The genotypes were assessed in terms of plant survival percentage, submergence tolerance index, physical condition, stem elongation, number of grains per panicle, thousand grain weight, grain yields and deviations in these traits after submergence stress. The PCR results suggested that both the primers ART5 and SC3 may be used as potential PCR-based markers for molecular screening of rice genotypes for SUB1 QTL. Furthermore, it confirmed the presence of SUB1 gene in all the lines imported from IRRI, while it was absent in all the local cultivars studied. All the genotypes with submergence tolerant gene (SUB1) showed significantly greater tolerance level in submergence stress of 14 days, as compared to other local cultivars/varieties, authenticating the effectiveness of SUB1QTL in conferring submergence tolerance. Significantly different performances of all the SUB1 genotypes in terms of all the studied traits indicate high Genotypic and Genotypic Environment Interaction (GEI) of SUB1QTL. Employment of SUB1 lines such as R105479:149-18, IR64-SUB1 and Rl05469:81-22-3 in breeding programs for developing flood tolerant rice varieties might further upsurge rice yields in flash flood areas. Correlation analysis revealed that plant survival percentage after submergence, reduced stem elongation during submergence and submergence tolerance index are very important traits for developing submergence tolerant lines.展开更多
Metastasis accounts for the major cause of colorectal cancer(CRC)related mortality due to the lack of effective treatments.In this study,we integrated the single-cell RNA-seq(sc RNA-seq)and bulk RNA-seq data and ident...Metastasis accounts for the major cause of colorectal cancer(CRC)related mortality due to the lack of effective treatments.In this study,we integrated the single-cell RNA-seq(sc RNA-seq)and bulk RNA-seq data and identified the transcriptional coactivator SUB1 homolog(SacSaccharomyces cerevisiae)/PC4(positive cofactor 4)associated with CRC metastasis.Elevated SUB1 expression was correlated with advanced tumor stage and poor survival in CRC.In vivo and vitro assays showed that SUB1 depletion could inhibit the invasive and metastatic abilities of CRC cells.SUB1 activated NF-κB signaling and its transcriptional target genes CXCL1 and CXCL3 to drive CRC metastasis.Mechanistically,SUB1 integrated with the E3 ubiquitin-protein ligase UBR5 and increased its protein level in CRC cells.Subsequently,the increased UBR5mainly mediated Lys11-linked polyubiquitination and degradation of NF-κB negative regulator UBXN1,thus to activate the NF-κB signaling.Overall,our study demonstrated that SUB1 promoted CRC progression by modulating UBR5/UBXN1 and activating NF-κB signaling,providing a new therapeutic strategy for treating metastatic CRC through targeting SUB1.展开更多
基金supported by German Federal Ministry from Economic Cooperation and Development (BMZ)
文摘Submergence is a serious environmental condition that causes large loss in rice production in rain fed lowland and flood affected area. This study evaluated morphological and physiological responses of rice roots to submergence using two tolerant rice genotypes FR13A and Swarna-Sub 1 and two sensitive ones Swarna and IR42. The tolerant genotypes had higher survival rate and less shoot elongation but greater root elongation during submergence than the sensitive ones. After submergence,the tolerant genotypes also had higher root dry weight and more active roots than the sensitive ones.Tolerant genotypes exhibited less root injury, with less malondialdehyde production and slower electrolyte leakage after submergence. Tolerant genotypes also maintained higher concentrations of soluble sugar and starch in roots and shoots and higher chlorophyll retention after submergence than the sensitive ones.Our data showed that root traits such as root activity and root growth are associated with survival rate after submergence. This is probably accomplished through higher energy supply, and membrane integrity is necessary to preserve root function and reduce injury during submergence. These root traits are important for submergence tolerance in rice.
文摘The present investigation embodies with some distinct physiological responses of rice seedlings bearing sub1A allele when cultured under soil moisture deficit condition. In order to estimate the extent of variation of sub1A allele in cv. Swarna Sub1, few specific responses were recorded. Ongoing days (2, 4 and 8) of water stress, rice seedlings were mostly concerned with regulation of root growth through 1.24%, 4.10% and 8.96% as compared to control. When relative growth rate (RGR) of the biomass was considered, it recorded a significant down regulation maximum by 27.27% over non-stressed plants. The light absorbing capacity of foliages in terms of leaf mass ratio (15.62%) and specific leaf weight (8.45%) was also curtailed under stress contiguously with total dry matter accumulation. For light harnessing mechanism, the contributing pigments were most significantly (p ≤ 0.05) affected with maximum variation for chlorophyll (31.29%), lycopene (79.31%) and carotenoids (55.31%) over control. NAR was strikingly differed by 32.72% under water stress in average. To support the water stress related depletion of moisture tension, plants recorded RWC with a ranges of 6.62% to 21.57% under stress than control. In balance of cellular dehydration rice seedlings were recorded 6.72% loss of proline, but up-regulated the release of free amino acids by 1.35 fold. In expression of generic potential for sub1A allele, the growth inhibition even under water deficit was evident from carbohydrate depletion by 10.93%, 11.42% and 24.35% through days of treatments. This was supported by depletion of apoplastic and cellular invertase activities by 90.90% and 72.91%. The possibility for sub1A in tolerance of deficit water status in rice culture has been discussed in more details.
文摘Flooding is one of the most hazardous natural disasters and a major stress constraint to rice production throughout the world,which results in huge economic loss.Approximately one-fourth of the global rice crops(approximately 40 million hectares)are grown in rainfed lowland plots that are prone to seasonal flooding.A great progress has been made during last two decades in our understanding of the mechanisms involved in adaptation and tolerance to flooding/submergence in rice.In this review,we summarized the physiological and molecular mechanisms that contribute to tolerance of flooding/submergence in rice.We also covered various features of flooding stress with special reference to rice plants,viz.different types of flooding stress,environmental characterisation of flood water,impact of flooding stress on rice plant and their morphological,physiological and metabolic responses under flooding.A brief discussion on the tolerance mechanism in rice exhibited to different types of flooding will be focused for the future crop improvement programme for development of flooding tolerant rice variety.
文摘Farmers in South East Asia are adopting rice crop establishment methods from transplanting to direct wet or dry seeding as it requires less labour and time and comparatively less energy than transplanting. In contrast to irrigated condition, in rainfed lowland, direct seeding is a common practice. Early flooding controls weeds but decreases seedling establishment in direct seeded rice. Anaerobic germination is an important trait to counteract damages caused by early flooding. Management options which can help in crop establishment and improve crop growth under flooding might remove the constraints related to direct seeding. The investigation was carried out with two near isogenic lines Swarna and Swarna- Sub1. Swarna-Subl is tolerant to submergence whereas Swarna is susceptible. Seed priming was done with water and 2% Jamun （Syzygium cumini） leaf extract, and it improved seedling establishment under flooding. Acceleration of growth occurred due to seed pretreatment, which resulted longer seedling and greater accumulation of biomass. Seed priming greatly hastened the activities of total amylase and alcohol dehydrogenase in Swarna-Subl than in Swarna. Swarna-Subl outperformed Swarna when the plants were cultivated under flooding. Weed biomass decreased significantly under flooding compared to non-flooding conditions. Seed priming had positive effects on yield and yield attributing parameters both under non-flooding and early flooding conditions.
文摘The present study evaluated submergence responses in 88 lowland indigenous rice(Oryza sativa L.) landraces from Koraput, India, to identify submergence-tolerant rice genotypes. In pot experiments, variations in survival rate, shoot elongation, relative growth index, dry matter, chlorophyll, soluble sugar and starch contents were evaluated in two consecutive years under well-drained and completely submerged conditions. Principal component analysis showed that the first three axes contributed 96.820% of the total variation among the landraces, indicating wide variation between genotypes. Major traits such as survival rate, relative growth index, soluble sugar and starch contents appeared to be important determinants of phenotypic diversity among the landraces. Phenotypic coefficient of variance was higher than genotypic coefficient of variance for all the traits and all showed high heritability(90.38%–99.54%). Five rice landraces(Samudrabali, Basnamundi, Gadaba, Surudaka and Dokarakuji) were the most tolerant to submergence. When submerged for up to 14d, Samudrabali, Basnamundi and Godoba were notable for having greater survival rates than a standard submergence tolerant variety FR13 A, and also notable for elongating more vigorously and accumulating more biomass. These three landraces may therefore be especially useful in lowland rice growing areas that are affected by both moderate stagnant water and flash flooding. Molecular genotyping revealed that the submergence tolerance of Samudrabali, Basnamundi and Godoba is linked to the presence of one or more different Sub1 loci and it may well prove useful for breeding improved submergence tolerant rice varieties, thereby assising to improve yield stability in the rainfed lowland agro-ecosystem.
文摘In the present study a group of four indigenous and less popular rice genotypes (Meghi, Panibhasha, Jabra and Sholey) reported by growers as submergence tolerant lines from flood prone areas of south Bengal were explored through study of nodal anatomy, physio-biochemical screening under submergence and genotyping with submergence tolerance linked rice microsatellite loci (RM loci). To identify the different allelic forms of different Sub1 compnents (Sub1A, Sub1B and Sub1C) among the studied lines, the genomic DNA of individual genotypes was amplified with three ethylene response factor like genes from Sub1 loci, located on rice chromosome 9. From the different physio-biochemical experiments performed in this investigation, it has been shown that Meghi and Jabra are the two probable potent genotypes which share common properties of both submergence tolerant and deep water nature whereas rest two genotypes (Sholey and Panibhasha) behave like typical deep water rice. The submergence tolerance property of Meghi was also confirmed from submergence tolerance linked SSR based genotyping by sharing with FR13A for some common alleles as reflected in fingerprint derived dendrogram. The rest of the genotypes shared a number of alleles and were included in a separate cluster. The common behaviour of Meghi and FR13A under submergence was also confirmed from genetic study of Sub1 loci through sharing of some common alleles for three Sub1 components (Sub1A, Sub1B and Sub1C loci). One SSR loci (RM 285) was identified as a potent molecular marker for submergence tolerance breeding programme involving these two selected rice lines (Meghi and Jabra) as donor plant through marker assisted selection.
文摘Single nucleotide polymorphisms and restriction digestion-based haplotype variations among 160 flood prone rice varieties were analyzed with enzymes Alu I and Cac8 I to generate polymorphisms at Sub1A and Sub1C loci （conferring submergence tolerance）, respectively. Haplotype associated with phenotype was used to study the haplotype variations at Sub1A and Sub1C loci and to determine their functional influence on submergence tolerance and stem elongation. Three patterns at Sub1A locus, Sub1A0 （null allele）, Sub1A1 （does not cut） and Sub1A2 （one SNP）, and four patterns at Sub1C locus, Sub1C1, Sub1C2, Sub1C3 and Sub1C4, were generated. Both tolerant Sub1A1 and intolerant Sub1A2 had the same length, but the difference was presence of a restriction site in the Sub1A2, but absent at the Sub1A1. Further, two types of polymorphism were detected at the Sub1C, one included major length polymorphisms （165, 170 and 175 bp） and the other was a single restriction site at different position. Eight haplotypes （different combinations of the two loci）, A1C1, A1C2, A1C4, A2C2, A2C4, A0C2, A0C3 and A0C4, were detected among 160 varieties. Haplotype A1C1 was comparatively more related to haplotypes A1C2 and A1C4, having the same Sub1A allele, and these haplotypes were found only in Bangladeshi, Sri Lankan and Indian varieties. Most tolerant varieties in A1C1 haplotype showed slow elongation, having tolerant specific Sub1A1 and Sub1C1 alleles. Further, the varieties Madabaru and Kottamali （A2C2） also showed moderate level of tolerance without Sub1A1 allele. These varieties were different with FR13A and also suspected to carry different novel tolerant genes at other loci. These materials could be used for hybridization with Sub1 varieties for pyramiding additional tolerant specific alleles into a single genotype for improving submergence tolerance in rice.
文摘Reasonable ＂eco-city＂in the external between urban and rural areas should make a complete ecological cycle of the system, so that the internal energy efficiency and low pollution, resource use environmentally clean, quiet comfortable life of the people, as well as other elements of the organic： unity of urban greening. So, ＂Eco-City＂, ＂urban ecology＂ are two heterogeneous areas should be treated differently. However, in rural and urban dualistic situation, China advocated ＂ecological city＂ ignored the rural ecological balance, resulting in ＂eco-city＂development directly into＂ urban ecology＂ construction within the city along with the waste of resources, water pollution, serious problems of air pollution, noise pollution, the deep ＂eco-city＂ into representation＂ urban ecology＂, in the standard does not cover up the sound, making the generation between rural and urban＂ material Rift ,＂after all ,can not be filled.
文摘Floods have now become most detrimental natural catastrophe worldwide due to radical climatic fluxes. Therefore, there is a dire necessity to develop a high yielding rice lines to deal with this scenario. For this purpose, a large scale experiment was conducted including one hundred and fifteen (115) rice genotypes having SUB1 gene imported from International Rice Research Institute (IRRI) Philippines, six local cultivars/approved varieties and three high yielding rice varieties i.e. Sabitri, IR6 and NSICRC222 being used as potential varieties in different countries of Asia as susceptible check and IR64-SUB1 as tolerant check. The genotypic screening was performed using two PCR-based DNA markers i.e. ART5 and SC3. Phenotypic screening was conducted in a natural pond to assess the interaction of SUB1 gene in natural stagnant flood water as well as the suitability of introgression of SUB1 gene into approved varieties and elite rice lines. The genotypes were assessed in terms of plant survival percentage, submergence tolerance index, physical condition, stem elongation, number of grains per panicle, thousand grain weight, grain yields and deviations in these traits after submergence stress. The PCR results suggested that both the primers ART5 and SC3 may be used as potential PCR-based markers for molecular screening of rice genotypes for SUB1 QTL. Furthermore, it confirmed the presence of SUB1 gene in all the lines imported from IRRI, while it was absent in all the local cultivars studied. All the genotypes with submergence tolerant gene (SUB1) showed significantly greater tolerance level in submergence stress of 14 days, as compared to other local cultivars/varieties, authenticating the effectiveness of SUB1QTL in conferring submergence tolerance. Significantly different performances of all the SUB1 genotypes in terms of all the studied traits indicate high Genotypic and Genotypic Environment Interaction (GEI) of SUB1QTL. Employment of SUB1 lines such as R105479:149-18, IR64-SUB1 and Rl05469:81-22-3 in breeding programs for developing flood tolerant rice varieties might further upsurge rice yields in flash flood areas. Correlation analysis revealed that plant survival percentage after submergence, reduced stem elongation during submergence and submergence tolerance index are very important traits for developing submergence tolerant lines.
基金supported by the National Natural Science Foundation of China(82073229,82072623)。
文摘Metastasis accounts for the major cause of colorectal cancer(CRC)related mortality due to the lack of effective treatments.In this study,we integrated the single-cell RNA-seq(sc RNA-seq)and bulk RNA-seq data and identified the transcriptional coactivator SUB1 homolog(SacSaccharomyces cerevisiae)/PC4(positive cofactor 4)associated with CRC metastasis.Elevated SUB1 expression was correlated with advanced tumor stage and poor survival in CRC.In vivo and vitro assays showed that SUB1 depletion could inhibit the invasive and metastatic abilities of CRC cells.SUB1 activated NF-κB signaling and its transcriptional target genes CXCL1 and CXCL3 to drive CRC metastasis.Mechanistically,SUB1 integrated with the E3 ubiquitin-protein ligase UBR5 and increased its protein level in CRC cells.Subsequently,the increased UBR5mainly mediated Lys11-linked polyubiquitination and degradation of NF-κB negative regulator UBXN1,thus to activate the NF-κB signaling.Overall,our study demonstrated that SUB1 promoted CRC progression by modulating UBR5/UBXN1 and activating NF-κB signaling,providing a new therapeutic strategy for treating metastatic CRC through targeting SUB1.
