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Improving the reaction mix of a Pichia pastoris cell-free system using a design of experiments approach to minimise experimental effort 被引量:1
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作者 Alex J.Spice Rochelle Aw +1 位作者 Daniel G.Bracewell Karen M.Polizzi 《Synthetic and Systems Biotechnology》 SCIE 2020年第3期137-144,共8页
A renaissance in cell-free protein synthesis(CFPS)is underway,enabled by the acceleration and adoption of synthetic biology methods.CFPS has emerged as a powerful platform technology for synthetic gene network design,... A renaissance in cell-free protein synthesis(CFPS)is underway,enabled by the acceleration and adoption of synthetic biology methods.CFPS has emerged as a powerful platform technology for synthetic gene network design,biosensing and on-demand biomanufacturing.Whilst primarily of bacterial origin,cell-free extracts derived from a variety of host organisms have been explored,aiming to capitalise on cellular diversity and the advantageous properties associated with those organisms.However,cell-free extracts produced from eukaryotes are often overlooked due to their relatively low yields,despite the potential for improved protein folding and posttranslational modifications.Here we describe further development of a Pichia pastoris cell-free platform,a widely used expression host in both academia and the biopharmaceutical industry.Using a minimised Design of Experiments(DOE)approach,we were able to increase the productivity of the system by improving the composition of the complex reaction mixture.This was achieved in a minimal number of experimental runs,within the constraints of the design and without the need for liquid-handling robots.In doing so,we were able to estimate the main effects impacting productivity in the system and increased the protein synthesis of firefly luciferase and the biopharmaceutical HSA by 4.8-fold and 3.5-fold,respectively.This study highlights the P.pastoris-based cell-free system as a highly productive eukaryotic platform and displays the value of minimised DOE designs. 展开更多
关键词 Cell-free protein synthesis Pichia pastoris synthetic biology design of experiments(doe)
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高通量平行发酵技术的发展与应用 被引量:1
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作者 白仲虎 任和 +1 位作者 聂简琪 孙杨 《合成生物学》 CSCD 2023年第5期904-915,共12页
21世纪初,为解决生物医药过程工程研究所面临的微生物和哺乳动物细胞培养的实验通量、研发效率与成本方面的问题,更重要的是质量源于设计(QbD)导向的生物过程工程实验设计(DoE)的迫切需要,基于微、小型生物反应器的平行发酵(细胞培养)... 21世纪初,为解决生物医药过程工程研究所面临的微生物和哺乳动物细胞培养的实验通量、研发效率与成本方面的问题,更重要的是质量源于设计(QbD)导向的生物过程工程实验设计(DoE)的迫切需要,基于微、小型生物反应器的平行发酵(细胞培养)技术与产品得到了广泛应用。近年来微生物代谢工程与合成生物学的飞速发展,对高性能菌种库的高通量筛选与菌种表型过程表现的早期评价提出了更高实验通量的需求,这进一步拓展了不同培养体积的平行发酵培养装置在工业生物技术领域的应用。时至今日,可模拟工业培养条件并实施过程参数准确控制的微小型反应器的多联罐平行发酵装置、系统操作软件和数据处理的集成系统已成为生物过程工程研发的强大工具,它在生物医药创新、代谢工程和合成生物学等基础研究成果向工业化技术转化中起到重要的支撑作用。特别是在合成生物学领域中,基于“工业相似性”原则的平行发酵技术,可以解决培养板或摇瓶高通量菌种筛选无法表征克隆表型、在规模化培养中的表现受培养过程参数显著影响的痛点问题,实现过程工程导向的高通量、高效率的菌种筛选与评价。本文对高通量平行发酵与细胞培养技术的发展近况与其在合成生物学研究中的应用场景做了介绍,其中主要总结了平行发酵培养技术在高通量菌种筛选评价“三段论”中的价值、平行发酵培养如何支持菌种筛选的工业相似性原则的实施、平行发酵培养结合DoE实验策略实施高效的生物过程工程开发、使用平行发酵培养建立过程多变元批次模型的方法,以及平行发酵培养与建立生物培养过程缩小模型的关系等。 展开更多
关键词 发酵 细胞培养 平行培养 高通量 合成生物学 实验设计(doe)
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