Hydrogen evolution reaction(HER) is a prospective method to generate pure hydrogen. The development of superior electrocatalysts based on earth-abundant materials, plays a critical role in the future.CoSe_2, one of th...Hydrogen evolution reaction(HER) is a prospective method to generate pure hydrogen. The development of superior electrocatalysts based on earth-abundant materials, plays a critical role in the future.CoSe_2, one of the earth-abundant electrocatalysts, has been proved to be a promising catalyst for hydrogen generation. In our work, flower-like CoSe_2 nanorods with high quality are successfully synthesized through a facile ethylenediaminetetraacetic acid ligand(EDTA)-assisted hydrothermal process. The flower-like CoSe_2 nanorods show the brilliant electrochemical HER performance with 100 mA cm^(-2) at overpotential of 273 m V, a small Tafel slope of 35 mV dec^(-1) and strong durability in acid solution. The sparkly HER catalytic activity of CoSe_2 can be ascribed to its particular structure with large surface area and abundant active sites. Therefore, this work offers an outstanding candidate for improving hydrogen production capabilities by water electrolysis.展开更多
According to the classic doctrine of angiosperm evolution,the archetype carpel in angiosperms is of plicate form.However,this concept is facing increasing challenges from the systematics based on molecular data,which ...According to the classic doctrine of angiosperm evolution,the archetype carpel in angiosperms is of plicate form.However,this concept is facing increasing challenges from the systematics based on molecular data,which now takes ascidiate carpel as ancestral.This reorientation in evolutionary thinking cannot be fully achieved unless there is supporting fossil evidence.Here a fruit, named Liaoningfructus,is reported from the famous Yixian Formation(Early Cretaceous,125 Ma), which yielded several pioneer angiosperms in the past decades.The configuration of the fruit suggests that the carpel giving rise to the fruit is most likely ascidiate,favoring the above reorientation.There are two seeds in the fruit,and at least one of them is served by a vascular bundle arising from the bottom of the fruit,implying a basal placentation in the former carpel,which again is different from the classic thinking.This discovery not only enhances the diversity of angiosperms in the Yixian Formation,but also accelerates the on-going switching of thinking on angiosperm evolution.展开更多
As one of the largest families of angiosperms,the Orchidaceae family is diverse.Dendrobium represents the second largest genus of the Orchidaceae.However,an assembled high-quality genome of species in this genus is la...As one of the largest families of angiosperms,the Orchidaceae family is diverse.Dendrobium represents the second largest genus of the Orchidaceae.However,an assembled high-quality genome of species in this genus is lacking.Here,we report a chromosome-scale reference genome of Dendrobium chrysotoxum,an important ornamental and medicinal orchid species.The assembled genome size of D.chrysotoxum was 1.37 Gb,with a contig N50 value of 1.54 Mb.Of the sequences,95.75%were anchored to 19 pseudochromosomes.There were 30,044 genes predicted in the D.chrysotoxum genome.Two whole-genome polyploidization events occurred in D.chrysotoxum.In terms of the second event,whole-genome duplication(WGD)was also found to have occurred in other Orchidaceae members,which diverged mainly via gene loss immediately after the WGD event occurred;the first duplication was found to have occurred in most monocots(tau event).We identified sugar transporter(SWEET)gene family expansion,which might be related to the abundant medicinal compounds and fleshy stems of D.chrysotoxum.MADS-box genes were identified in D.chrysotoxum,as well as members of TPS and Hsp90 gene families,which are associated with resistance,which may contribute to the adaptive evolution of orchids.We also investigated the interplay among carotenoid,ABA,and ethylene biosynthesis in D.chrysotoxum to elucidate the regulatory mechanisms of the short flowering period of orchids with yellow flowers.The reference D.chrysotoxum genome will provide important insights for further research on medicinal active ingredients and breeding and enhances the understanding of orchid evolution.展开更多
DNA methylation is a crucial regulatory mechanism in many biological processes.However,limited studies have dissected the contribution of DNA methylation to sexual differentiation in dioecious plants.In this study,we ...DNA methylation is a crucial regulatory mechanism in many biological processes.However,limited studies have dissected the contribution of DNA methylation to sexual differentiation in dioecious plants.In this study,we investigated the variances in methylation and transcriptional patterns of male and female flowers of garden asparagus.Compared with male flowers,female flowers at the same stages showed higher levels of DNA methylation.Both male and female flowers gained DNA methylation globally from the premeiotic to meiotic stages.Detailed analysis revealed that the increased DNA methylation was largely due to increased CHH methylation.Correlation analysis of differentially expressed genes and differentially methylated regions suggested that DNA methylation might not have contributed to the expression variation of the sex-determining genes SOFF and TDF1 but probably played important roles in sexual differentiation and flower development of garden asparagus.The upregulated genes AoMS1,AoLAP3,AoAMS,and AoLAP5 with varied methylated CHH regions might have been involved in sexual differentiation and flower development of garden asparagus.Plant hormone signaling genes and transcription factor genes also participated in sexual differentiation and flower development with potential epigenetic regulation.In addition,the CG and CHG methylation levels in the Y chromosome were notably higher than those in the X chromosome,implying that DNA methylation might have been involved in Y chromosome evolution.These data provide insights into the epigenetic modification of sexual differentiation and flower development and improve our understanding of sex chromosome evolution in garden asparagus.展开更多
Crape myrtle(Lagerstroemia indica)is a globally used ornamental woody plant and is the representative species of Lagerstroemia.However,studies on the evolution and genomic breeding of L.indica have been hindered by th...Crape myrtle(Lagerstroemia indica)is a globally used ornamental woody plant and is the representative species of Lagerstroemia.However,studies on the evolution and genomic breeding of L.indica have been hindered by the lack of a reference genome.Here we assembled the first high-quality genome of L.indica using PacBio combined with Hi-C scaffolding to anchor the 329.14-Mb genome assembly into 24 pseudochromosomes.We detected a previously undescribed independent whole-genome triplication event occurring 35.5 million years ago in L.indica following its divergence from Punica granatum.After resequencing 73 accessions of Lagerstroemia,the main parents of modern crape myrtle cultivars were found to be L.indica and L.fauriei.During the process of domestication,genetic diversity tended to decrease in many plants,but this was not observed in L.indica.We constructed a high-density genetic linkage map with an average map distance of 0.33 cM.Furthermore,we integrated the results of quantitative trait locus(QTL)using genetic mapping and bulk segregant analysis(BSA),revealing that the major-effect interval controlling internode length(IL)is located on chr1,which contains CDL15,CRG98,and GID1b1 associated with the phytohormone pathways.Analysis of gene expression of the red,purple,and white flower-colour flavonoid pathways revealed that differential expression of multiple genes determined the flower colour of L.indica,with white flowers having the lowest gene expression.In addition,BSA of purple-and green-leaved individuals of populations of L.indica was performed,and the leaf colour loci were mapped to chr12 and chr17.Within these intervals,we identified MYB35,NCED,and KAS1.Our genome assembly provided a foundation for investigating the evolution,population structure,and differentiation of Myrtaceae species and accelerating the molecular breeding of L.indica.展开更多
Cymbidium goeringii is one of the important ornamental orchids,but its high-quality genome has not been previously published.Here,we report a chromosome-level genome of C.goeringii and report the gene family expansion...Cymbidium goeringii is one of the important ornamental orchids,but its high-quality genome has not been previously published.Here,we report a chromosome-level genome of C.goeringii and report the gene family expansion,and contraction of the C.goeringii genome and the regulation mechanism of MADS-box genes in floral organ development.We constructed the pathways of carotenoids and anthocyanins that contribute to the different flower colors of C.goeringii and the metabolic pathways of the main components of flower fragrance.Moreover,we found the genes that regulate colourful leaves and analyzed the resistance genes involved in the adaptive evolution of C.goeringii.Our results provide valuable genomic resources for the improvement of orchids and other ornamental plants.展开更多
Recently, whether Archaefructus has bisexual multi-parted flowers or just inflorescences of unisexual flowers, and whether it is ancestral to all angiosperms or a derived eudicot have been debated. Here, from the same...Recently, whether Archaefructus has bisexual multi-parted flowers or just inflorescences of unisexual flowers, and whether it is ancestral to all angiosperms or a derived eudicot have been debated. Here, from the same Yixian Formation, NE China, we report a new Archaefructus species, A. eoflora sp. nov., with the generic characteristics of dissected leaves and bisexual reproductive axes. It is entirely preserved with roots, rhizome, shoots and protogynous reproductive organs at different developmental stages. Its lateral and main fertile shoots form a pseudo-indeterminate pattern, while the reproductive branches on the main shoot form a cymose inflorescence. Subtended by 1-2 bract-like leaves, the section of stamen clusters changes into a much shorter section of carpels that have one row of orthotropous ovules. Significantly, one cluster bearing two carpels and one stamen between the two sections demonstrates a true bisexual flower, an important step of the origin of floral bisexuality, and the homology between the stamen and carpel. The complex reproductive axes represent a mix between flowers and inflorescences, and suggest that A. eoflora sp. nov. possesses the potential to evolve into a variety of diverse flower types as found in modern basal and early fossil angiosperms. A comparison with other two species also leads to a revision of the generic diagnosis.展开更多
Angiosperms(flowering plants) are by far the most diverse land plant group with over 300,000 species. The sudden appearance of diverse angiosperms in the fossil record was referred to by Darwin as the “abominable mys...Angiosperms(flowering plants) are by far the most diverse land plant group with over 300,000 species. The sudden appearance of diverse angiosperms in the fossil record was referred to by Darwin as the “abominable mystery,”hence contributing to the heightened interest in angiosperm evolution. Angiosperms display wide ranges of morphological, physiological,and ecological characters, some of which have probably influenced their species richness. The evolutionary analyses of these characteristics help to address questions of angiosperm diversification and require well resolved phylogeny. Following the great successes of phylogenetic analyses using plastid sequences,dozens to thousands of nuclear genes from next-generation sequencing have been used in angiosperm phylogenomic analyses, providing well resolved phylogenies and new insights into the evolution of angiosperms. In this review we focus on recent nuclear phylogenomic analyses of large angiosperm clades, orders, families,and subdivisions of some families and provide a summarized Nuclear Phylogenetic Tree of Angiosperm Families. The newly established nuclear phylogenetic relationships are highlighted and compared with previous phylogenetic results. The sequenced genomes of Amborella,Nymphaea, Chloranthus, Ceratophyllum, and species of monocots, Magnoliids, and basal eudicots, have facilitated the phylogenomics of relationships among five major angiosperms clades. All but one of the 64 angiosperm orders were included in nuclear phylogenomics with well resolved relationships except the placements of several orders. Most families have been included with robust and highly supported placements, especially for relationships within several large and important orders and families.Additionally, we examine the divergence time estimation and biogeographic analyses of angiosperm on the basis of the nuclear phylogenomic frameworks and discuss the differences compared with previous analyses. Furthermore,we discuss the implications of nuclear phylogenomic analyses on ancestral reconstruction of morphological, physiological, and ecological characters of angiosperm groups, limitations of current nuclear phylogenomic studies, and the taxa that require future attention.展开更多
In plant development, the flowering transition and inflorescence architecture are modulated by two homol- ogous proteins, FLOWERING LOCUS T (FT) and TERMINAL FLOWER 1 (TFL1). The florigen FT promotes the transitio...In plant development, the flowering transition and inflorescence architecture are modulated by two homol- ogous proteins, FLOWERING LOCUS T (FT) and TERMINAL FLOWER 1 (TFL1). The florigen FT promotes the transition to reproductive development and flowering, while TFL1 represses this transition. Despite their importance to plant adaptation and crop improvement and their extensive study by the plant community, the molecular mechanisms controlling the opposing actions of FT and TFL1 have remained mysterious. Recent studies in multiple species have unveiled diverse roles of the FT/TFL 1 gene family in developmental processes other than flowering regulation. In addition, the striking evolution of FT homologs into flowering repressors has occurred independently in several species during the evolution of flowering plants. These reports indicate that the FT/TFL1 gene family is a major target of evolution in nature. Here, we comprehen- sively survey the conserved and diverse functions of the FTITFL1 gene family throughout the plant kingdom, summarize new findings regarding the unique evolution of FT in multiple species, and highlight recent work elucidating the molecular mechanisms of these proteins.展开更多
The Asteraceae (Compositae),a large plant family of approximately 24 000-35 000 species,accounts for^10% of all angiosperm species and contributes a lot to plant diversity.The most representative members of the Astera...The Asteraceae (Compositae),a large plant family of approximately 24 000-35 000 species,accounts for^10% of all angiosperm species and contributes a lot to plant diversity.The most representative members of the Asteraceae are the economically important chrysanthemums (Chrysanthemum L.)that diversified through reticulate evolution.Biodiversity is typically created by multiple evolutionary mechanisms such as wholegenome duplication 0NGD)or polyploidization and locally repetitive genome expansion.However,the lack of genomic data from chrysanthemum species has prevented an in-depth analysis of the evolutionary mechanisms involved in their diversification.Here,we used Oxford Nanopore long-read technologyto sequence the diploid Chrysanthemum nankingense genome,which represents one of the progenitor genomes of domesticated chrysanthemums.Our analysis revealed that the evolution of the C.nankingense genome was driven by bursts of repetitive element expansion and WGD events including a recentWGD that distinguishes chrysanthemum from sunflower,which diverged from chrysanthemum approximately 38.8 million years ago.Variations of ornamental and medicinal traits in chrysanthemums are linked to the expansion of candidate gene families by duplication events including paralogous gene duplication.Collectively,our study of the assembled reference genome offers new knowledge and resources to dissect the history and pattern of evolution and diversification of chrysanthemum plants,and also to accelerate their breeding and improvement.展开更多
基金financially supported by the National Natural Science Foundation of China (No. 21675131, 21273174)the Municipal Science Foundation of Chongqing City (No. CSTC2015jcyjB50001)
文摘Hydrogen evolution reaction(HER) is a prospective method to generate pure hydrogen. The development of superior electrocatalysts based on earth-abundant materials, plays a critical role in the future.CoSe_2, one of the earth-abundant electrocatalysts, has been proved to be a promising catalyst for hydrogen generation. In our work, flower-like CoSe_2 nanorods with high quality are successfully synthesized through a facile ethylenediaminetetraacetic acid ligand(EDTA)-assisted hydrothermal process. The flower-like CoSe_2 nanorods show the brilliant electrochemical HER performance with 100 mA cm^(-2) at overpotential of 273 m V, a small Tafel slope of 35 mV dec^(-1) and strong durability in acid solution. The sparkly HER catalytic activity of CoSe_2 can be ascribed to its particular structure with large surface area and abundant active sites. Therefore, this work offers an outstanding candidate for improving hydrogen production capabilities by water electrolysis.
基金supported by the Knowledge Innovation Program of the Chinese Academy of Sciences(KZCX2-YW-154)the National Natural Science Foundation of China(40772006, 40625006,40632010 and J0630967)+1 种基金the State Key Laboratory of Palaeobiology and Stratigraphy,Nanjing Institute of Geology and Palaeontology Programs (20102108,20101104)the Scientific Research Foundation for the Returned Overseas Chinese Scholars, State Education Ministry
文摘According to the classic doctrine of angiosperm evolution,the archetype carpel in angiosperms is of plicate form.However,this concept is facing increasing challenges from the systematics based on molecular data,which now takes ascidiate carpel as ancestral.This reorientation in evolutionary thinking cannot be fully achieved unless there is supporting fossil evidence.Here a fruit, named Liaoningfructus,is reported from the famous Yixian Formation(Early Cretaceous,125 Ma), which yielded several pioneer angiosperms in the past decades.The configuration of the fruit suggests that the carpel giving rise to the fruit is most likely ascidiate,favoring the above reorientation.There are two seeds in the fruit,and at least one of them is served by a vascular bundle arising from the bottom of the fruit,implying a basal placentation in the former carpel,which again is different from the classic thinking.This discovery not only enhances the diversity of angiosperms in the Yixian Formation,but also accelerates the on-going switching of thinking on angiosperm evolution.
基金This project was supported by the Guangdong Innovation Research Team Fund(2014ZT05S078)National Natural Science Foundation of China(grants 31571252 and 31772322)+7 种基金Guangdong Special Support Program for Young Talents in Innovation Research of Science and Technology(2019TQ05N940)Shenzhen Peacock Grant(827/000189)Science and Technology Program of Guangdong Province,China(2019B121202006)Program of Forestry Administration of Guangdong Province(E036011002)Department for Wildlife and Forest Plant Protection of the National Forest and Grassland Administration(2019073010)National Key Research and Development Program of China(No.2018YFD1000400)Special Research Foundation of Hebei Agricultural University(YJ201848)Natural Science Foundation of Hebei Province(C2019204295).
文摘As one of the largest families of angiosperms,the Orchidaceae family is diverse.Dendrobium represents the second largest genus of the Orchidaceae.However,an assembled high-quality genome of species in this genus is lacking.Here,we report a chromosome-scale reference genome of Dendrobium chrysotoxum,an important ornamental and medicinal orchid species.The assembled genome size of D.chrysotoxum was 1.37 Gb,with a contig N50 value of 1.54 Mb.Of the sequences,95.75%were anchored to 19 pseudochromosomes.There were 30,044 genes predicted in the D.chrysotoxum genome.Two whole-genome polyploidization events occurred in D.chrysotoxum.In terms of the second event,whole-genome duplication(WGD)was also found to have occurred in other Orchidaceae members,which diverged mainly via gene loss immediately after the WGD event occurred;the first duplication was found to have occurred in most monocots(tau event).We identified sugar transporter(SWEET)gene family expansion,which might be related to the abundant medicinal compounds and fleshy stems of D.chrysotoxum.MADS-box genes were identified in D.chrysotoxum,as well as members of TPS and Hsp90 gene families,which are associated with resistance,which may contribute to the adaptive evolution of orchids.We also investigated the interplay among carotenoid,ABA,and ethylene biosynthesis in D.chrysotoxum to elucidate the regulatory mechanisms of the short flowering period of orchids with yellow flowers.The reference D.chrysotoxum genome will provide important insights for further research on medicinal active ingredients and breeding and enhances the understanding of orchid evolution.
基金This work was financially supported by grants from the National Natural Science Foundation of China(31970240 and 31470334)the Natural Science Foundation of Henan Province(202300410242).
文摘DNA methylation is a crucial regulatory mechanism in many biological processes.However,limited studies have dissected the contribution of DNA methylation to sexual differentiation in dioecious plants.In this study,we investigated the variances in methylation and transcriptional patterns of male and female flowers of garden asparagus.Compared with male flowers,female flowers at the same stages showed higher levels of DNA methylation.Both male and female flowers gained DNA methylation globally from the premeiotic to meiotic stages.Detailed analysis revealed that the increased DNA methylation was largely due to increased CHH methylation.Correlation analysis of differentially expressed genes and differentially methylated regions suggested that DNA methylation might not have contributed to the expression variation of the sex-determining genes SOFF and TDF1 but probably played important roles in sexual differentiation and flower development of garden asparagus.The upregulated genes AoMS1,AoLAP3,AoAMS,and AoLAP5 with varied methylated CHH regions might have been involved in sexual differentiation and flower development of garden asparagus.Plant hormone signaling genes and transcription factor genes also participated in sexual differentiation and flower development with potential epigenetic regulation.In addition,the CG and CHG methylation levels in the Y chromosome were notably higher than those in the X chromosome,implying that DNA methylation might have been involved in Y chromosome evolution.These data provide insights into the epigenetic modification of sexual differentiation and flower development and improve our understanding of sex chromosome evolution in garden asparagus.
基金supported by National Key R&D Program of China(2019YFD1001004,2019YFD1000402)the program for Science and Technology of Beijing(Z181100002418006)the Special Fund for Beijing Common Construction Project.
文摘Crape myrtle(Lagerstroemia indica)is a globally used ornamental woody plant and is the representative species of Lagerstroemia.However,studies on the evolution and genomic breeding of L.indica have been hindered by the lack of a reference genome.Here we assembled the first high-quality genome of L.indica using PacBio combined with Hi-C scaffolding to anchor the 329.14-Mb genome assembly into 24 pseudochromosomes.We detected a previously undescribed independent whole-genome triplication event occurring 35.5 million years ago in L.indica following its divergence from Punica granatum.After resequencing 73 accessions of Lagerstroemia,the main parents of modern crape myrtle cultivars were found to be L.indica and L.fauriei.During the process of domestication,genetic diversity tended to decrease in many plants,but this was not observed in L.indica.We constructed a high-density genetic linkage map with an average map distance of 0.33 cM.Furthermore,we integrated the results of quantitative trait locus(QTL)using genetic mapping and bulk segregant analysis(BSA),revealing that the major-effect interval controlling internode length(IL)is located on chr1,which contains CDL15,CRG98,and GID1b1 associated with the phytohormone pathways.Analysis of gene expression of the red,purple,and white flower-colour flavonoid pathways revealed that differential expression of multiple genes determined the flower colour of L.indica,with white flowers having the lowest gene expression.In addition,BSA of purple-and green-leaved individuals of populations of L.indica was performed,and the leaf colour loci were mapped to chr12 and chr17.Within these intervals,we identified MYB35,NCED,and KAS1.Our genome assembly provided a foundation for investigating the evolution,population structure,and differentiation of Myrtaceae species and accelerating the molecular breeding of L.indica.
基金funded by the project of Jiangsu agricultural science and technology innovation fund:'Research on the breeding technique of new varieties with red flowers of spring orchids'(No.CX(19)3118)Research Fund of Agricultural Science Institute in Lixiahe area of Jiangsu Province(No.SJ(21)302)Platform for the protection and utilization of agricultural germplasm resources in Jiangsu Province:'The germplasm resources nursery of Chinese orchids'(No.JSGB2018-01).
文摘Cymbidium goeringii is one of the important ornamental orchids,but its high-quality genome has not been previously published.Here,we report a chromosome-level genome of C.goeringii and report the gene family expansion,and contraction of the C.goeringii genome and the regulation mechanism of MADS-box genes in floral organ development.We constructed the pathways of carotenoids and anthocyanins that contribute to the different flower colors of C.goeringii and the metabolic pathways of the main components of flower fragrance.Moreover,we found the genes that regulate colourful leaves and analyzed the resistance genes involved in the adaptive evolution of C.goeringii.Our results provide valuable genomic resources for the improvement of orchids and other ornamental plants.
文摘Recently, whether Archaefructus has bisexual multi-parted flowers or just inflorescences of unisexual flowers, and whether it is ancestral to all angiosperms or a derived eudicot have been debated. Here, from the same Yixian Formation, NE China, we report a new Archaefructus species, A. eoflora sp. nov., with the generic characteristics of dissected leaves and bisexual reproductive axes. It is entirely preserved with roots, rhizome, shoots and protogynous reproductive organs at different developmental stages. Its lateral and main fertile shoots form a pseudo-indeterminate pattern, while the reproductive branches on the main shoot form a cymose inflorescence. Subtended by 1-2 bract-like leaves, the section of stamen clusters changes into a much shorter section of carpels that have one row of orthotropous ovules. Significantly, one cluster bearing two carpels and one stamen between the two sections demonstrates a true bisexual flower, an important step of the origin of floral bisexuality, and the homology between the stamen and carpel. The complex reproductive axes represent a mix between flowers and inflorescences, and suggest that A. eoflora sp. nov. possesses the potential to evolve into a variety of diverse flower types as found in modern basal and early fossil angiosperms. A comparison with other two species also leads to a revision of the generic diagnosis.
基金supported by funds from the Eberly College of Sciences and the Huck Institutes of the Life Sciences at the Pennsylvania State University。
文摘Angiosperms(flowering plants) are by far the most diverse land plant group with over 300,000 species. The sudden appearance of diverse angiosperms in the fossil record was referred to by Darwin as the “abominable mystery,”hence contributing to the heightened interest in angiosperm evolution. Angiosperms display wide ranges of morphological, physiological,and ecological characters, some of which have probably influenced their species richness. The evolutionary analyses of these characteristics help to address questions of angiosperm diversification and require well resolved phylogeny. Following the great successes of phylogenetic analyses using plastid sequences,dozens to thousands of nuclear genes from next-generation sequencing have been used in angiosperm phylogenomic analyses, providing well resolved phylogenies and new insights into the evolution of angiosperms. In this review we focus on recent nuclear phylogenomic analyses of large angiosperm clades, orders, families,and subdivisions of some families and provide a summarized Nuclear Phylogenetic Tree of Angiosperm Families. The newly established nuclear phylogenetic relationships are highlighted and compared with previous phylogenetic results. The sequenced genomes of Amborella,Nymphaea, Chloranthus, Ceratophyllum, and species of monocots, Magnoliids, and basal eudicots, have facilitated the phylogenomics of relationships among five major angiosperms clades. All but one of the 64 angiosperm orders were included in nuclear phylogenomics with well resolved relationships except the placements of several orders. Most families have been included with robust and highly supported placements, especially for relationships within several large and important orders and families.Additionally, we examine the divergence time estimation and biogeographic analyses of angiosperm on the basis of the nuclear phylogenomic frameworks and discuss the differences compared with previous analyses. Furthermore,we discuss the implications of nuclear phylogenomic analyses on ancestral reconstruction of morphological, physiological, and ecological characters of angiosperm groups, limitations of current nuclear phylogenomic studies, and the taxa that require future attention.
文摘In plant development, the flowering transition and inflorescence architecture are modulated by two homol- ogous proteins, FLOWERING LOCUS T (FT) and TERMINAL FLOWER 1 (TFL1). The florigen FT promotes the transition to reproductive development and flowering, while TFL1 represses this transition. Despite their importance to plant adaptation and crop improvement and their extensive study by the plant community, the molecular mechanisms controlling the opposing actions of FT and TFL1 have remained mysterious. Recent studies in multiple species have unveiled diverse roles of the FT/TFL 1 gene family in developmental processes other than flowering regulation. In addition, the striking evolution of FT homologs into flowering repressors has occurred independently in several species during the evolution of flowering plants. These reports indicate that the FT/TFL1 gene family is a major target of evolution in nature. Here, we comprehen- sively survey the conserved and diverse functions of the FTITFL1 gene family throughout the plant kingdom, summarize new findings regarding the unique evolution of FT in multiple species, and highlight recent work elucidating the molecular mechanisms of these proteins.
基金The National Key Research and Development Program of China (2016YFD0801102)and the National Natural Science Foundation of China (31870198 and 31400278).
文摘The Asteraceae (Compositae),a large plant family of approximately 24 000-35 000 species,accounts for^10% of all angiosperm species and contributes a lot to plant diversity.The most representative members of the Asteraceae are the economically important chrysanthemums (Chrysanthemum L.)that diversified through reticulate evolution.Biodiversity is typically created by multiple evolutionary mechanisms such as wholegenome duplication 0NGD)or polyploidization and locally repetitive genome expansion.However,the lack of genomic data from chrysanthemum species has prevented an in-depth analysis of the evolutionary mechanisms involved in their diversification.Here,we used Oxford Nanopore long-read technologyto sequence the diploid Chrysanthemum nankingense genome,which represents one of the progenitor genomes of domesticated chrysanthemums.Our analysis revealed that the evolution of the C.nankingense genome was driven by bursts of repetitive element expansion and WGD events including a recentWGD that distinguishes chrysanthemum from sunflower,which diverged from chrysanthemum approximately 38.8 million years ago.Variations of ornamental and medicinal traits in chrysanthemums are linked to the expansion of candidate gene families by duplication events including paralogous gene duplication.Collectively,our study of the assembled reference genome offers new knowledge and resources to dissect the history and pattern of evolution and diversification of chrysanthemum plants,and also to accelerate their breeding and improvement.