Deep matrix factorization(DMF)has been demonstrated to be a powerful tool to take in the complex hierarchical information of multi-view data(MDR).However,existing multiview DMF methods mainly explore the consistency o...Deep matrix factorization(DMF)has been demonstrated to be a powerful tool to take in the complex hierarchical information of multi-view data(MDR).However,existing multiview DMF methods mainly explore the consistency of multi-view data,while neglecting the diversity among different views as well as the high-order relationships of data,resulting in the loss of valuable complementary information.In this paper,we design a hypergraph regularized diverse deep matrix factorization(HDDMF)model for multi-view data representation,to jointly utilize multi-view diversity and a high-order manifold in a multilayer factorization framework.A novel diversity enhancement term is designed to exploit the structural complementarity between different views of data.Hypergraph regularization is utilized to preserve the high-order geometry structure of data in each view.An efficient iterative optimization algorithm is developed to solve the proposed model with theoretical convergence analysis.Experimental results on five real-world data sets demonstrate that the proposed method significantly outperforms stateof-the-art multi-view learning approaches.展开更多
Aiming at the Four-Dimensional Variation source term inversion algorithm proposed earlier,the observation error regularization factor is introduced to improve the prediction accuracy of the diffusion model,and an impr...Aiming at the Four-Dimensional Variation source term inversion algorithm proposed earlier,the observation error regularization factor is introduced to improve the prediction accuracy of the diffusion model,and an improved Four-Dimensional Variation source term inversion algorithm with observation error regularization(OER-4DVAR STI model)is formed.Firstly,by constructing the inversion process and basic model of OER-4DVAR STI model,its basic principle and logical structure are studied.Secondly,the observation error regularization factor estimation method based on Bayesian optimization is proposed,and the error factor is separated and optimized by two parameters:error statistical time and deviation degree.Finally,the scientific,feasible and advanced nature of the OER-4DVAR STI model are verified by numerical simulation and tracer test data.The experimental results show that OER-4DVAR STI model can better reverse calculate the hazard source term information under the conditions of high atmospheric stability and flat underlying surface.Compared with the previous inversion algorithm,the source intensity estimation accuracy of OER-4DVAR STI model is improved by about 46.97%,and the source location estimation accuracy is improved by about 26.72%.展开更多
The combination of structural health monitoring and vibration control is of great importance to provide components of smart structures.While synthetic algorithms have been proposed,adaptive control that is compatible ...The combination of structural health monitoring and vibration control is of great importance to provide components of smart structures.While synthetic algorithms have been proposed,adaptive control that is compatible with changing conditions still needs to be used,and time-varying systems are required to be simultaneously estimated with the application of adaptive control.In this research,the identification of structural time-varying dynamic characteristics and optimized simple adaptive control are integrated.First,reduced variations of physical parameters are estimated online using the multiple forgetting factor recursive least squares(MFRLS)method.Then,the energy from the structural vibration is simultaneously specified to optimize the control force with the identified parameters to be operational.Optimization is also performed based on the probability density function of the energy under the seismic excitation at any time.Finally,the optimal control force is obtained by the simple adaptive control(SAC)algorithm and energy coefficient.A numerical example and benchmark structure are employed to investigate the efficiency of the proposed approach.The simulation results revealed the effectiveness of the integrated online identification and optimal adaptive control in systems.展开更多
Link prediction has attracted wide attention among interdisciplinaryresearchers as an important issue in complex network. It aims to predict the missing links in current networks and new links that will appear in fut...Link prediction has attracted wide attention among interdisciplinaryresearchers as an important issue in complex network. It aims to predict the missing links in current networks and new links that will appear in future networks.Despite the presence of missing links in the target network of link prediction studies, the network it processes remains macroscopically as a large connectedgraph. However, the complexity of the real world makes the complex networksabstracted from real systems often contain many isolated nodes. This phenomenon leads to existing link prediction methods not to efficiently implement the prediction of missing edges on isolated nodes. Therefore, the cold-start linkprediction is favored as one of the most valuable subproblems of traditional linkprediction. However, due to the loss of many links in the observation network, thetopological information available for completing the link prediction task is extremely scarce. This presents a severe challenge for the study of cold-start link prediction. Therefore, how to mine and fuse more available non-topologicalinformation from observed network becomes the key point to solve the problemof cold-start link prediction. In this paper, we propose a framework for solving thecold-start link prediction problem, a joint-weighted symmetric nonnegative matrixfactorization model fusing graph regularization information, based on low-rankapproximation algorithms in the field of machine learning. First, the nonlinear features in high-dimensional space of node attributes are captured by the designedgraph regularization term. Second, using a weighted matrix, we associate the attribute similarity and first order structure information of nodes and constrain eachother. Finally, a unified framework for implementing cold-start link prediction isconstructed by using a symmetric nonnegative matrix factorization model to integrate the multiple information extracted together. Extensive experimental validationon five real networks with attributes shows that the proposed model has very goodpredictive performance when predicting missing edges of isolated nodes.展开更多
This paper proposes a Graph regularized Lpsmooth non-negative matrix factorization(GSNMF) method by incorporating graph regularization and L_p smoothing constraint, which considers the intrinsic geometric information ...This paper proposes a Graph regularized Lpsmooth non-negative matrix factorization(GSNMF) method by incorporating graph regularization and L_p smoothing constraint, which considers the intrinsic geometric information of a data set and produces smooth and stable solutions. The main contributions are as follows: first, graph regularization is added into NMF to discover the hidden semantics and simultaneously respect the intrinsic geometric structure information of a data set. Second,the Lpsmoothing constraint is incorporated into NMF to combine the merits of isotropic(L_2-norm) and anisotropic(L_1-norm)diffusion smoothing, and produces a smooth and more accurate solution to the optimization problem. Finally, the update rules and proof of convergence of GSNMF are given. Experiments on several data sets show that the proposed method outperforms related state-of-the-art methods.展开更多
There are abundant coal and coalbed methane(CBM)resources in the Xishanyao Formation in the western region of the southern Junggar Basin,and the prospects for CBM exploration and development are promising.To promote t...There are abundant coal and coalbed methane(CBM)resources in the Xishanyao Formation in the western region of the southern Junggar Basin,and the prospects for CBM exploration and development are promising.To promote the exploration and development of the CBM resources of the Xishanyao Formation in this area,we studied previous coalfield survey data and CBM geological exploration data.Then,we analyzed the relationships between the gas content and methane concentration vs.coal seam thickness,burial depth,coal reservoir physical characteristics,hydrogeological conditions,and roof and floor lithology.In addition,we briefly discuss the main factors influencing CBM accumulation.First,we found that the coal strata of the Xishanyao Formation in the study area are relatively simple in structure,and the coal seam has a large thickness and burial depth,as well as moderately good roof and floor conditions.The hydrogeological conditions and coal reservoir physical characteristics are also conducive to the enrichment and a high yield of CBM.We believe that the preservation of CBM resources in the study area is mainly controlled by the structure,burial depth,and hydrogeological conditions.Furthermore,on the basis of the above results,the coal seam of the Xishanyao Formation in the synclinal shaft and buried at depths of 700-1000 m should be the first considered for development.展开更多
Currently,functional connectomes constructed from neuroimaging data have emerged as a powerful tool in identifying brain disorders.If one brain disease just manifests as some cognitive dysfunction,it means that the di...Currently,functional connectomes constructed from neuroimaging data have emerged as a powerful tool in identifying brain disorders.If one brain disease just manifests as some cognitive dysfunction,it means that the disease may affect some local connectivity in the brain functional network.That is,there are functional abnormalities in the sub-network.Therefore,it is crucial to accurately identify them in pathological diagnosis.To solve these problems,we proposed a sub-network extraction method based on graph regularization nonnegative matrix factorization(GNMF).The dynamic functional networks of normal subjects and early mild cognitive impairment(eMCI)subjects were vectorized and the functional connection vectors(FCV)were assembled to aggregation matrices.Then GNMF was applied to factorize the aggregation matrix to get the base matrix,in which the column vectors were restored to a common sub-network and a distinctive sub-network,and visualization and statistical analysis were conducted on the two sub-networks,respectively.Experimental results demonstrated that,compared with other matrix factorization methods,the proposed method can more obviously reflect the similarity between the common subnetwork of eMCI subjects and normal subjects,as well as the difference between the distinctive sub-network of eMCI subjects and normal subjects,Therefore,the high-dimensional features in brain functional networks can be best represented locally in the lowdimensional space,which provides a new idea for studying brain functional connectomes.展开更多
The work illustrates the impossibility of decreasing entropy in a strictly random thermodynamic process in a non-isolated system using the example of heating a planet by solar radiation flux without and taking into ac...The work illustrates the impossibility of decreasing entropy in a strictly random thermodynamic process in a non-isolated system using the example of heating a planet by solar radiation flux without and taking into account its rotation around its own axis. That is, the second law of thermodynamics formulated for isolated systems continues to govern such systems. We have shown that in order to achieve a stationary state at lower values of temperature and entropy far from thermodynamic equilibrium at a maximum of temperature and entropy, it is necessary to have regular factors of nonrandom nature, one of which in this example is the rotation of the planet around its own axis. This means that the reason for the appearance of ordered structured objects in non-isolated thermodynamic systems is not the random process itself, but the action of dynamic control mechanisms, such as periodic external influences, nonlinear elements with positive feedback, catalysts for chemical reactions, etc. We present the plots with dependences of temperature and entropy versus time in non-isolated systems with purely random processes and in the presence of a control factor of non-random nature-rotation.展开更多
Peanut stem rot caused by Sclerotium rolfsii is a soil-borne disease,and it has become the main disease of peanut in Yimeng mountainous area.S.rolfsii survives the winter as mycelia and sclerotia in soil and debris,be...Peanut stem rot caused by Sclerotium rolfsii is a soil-borne disease,and it has become the main disease of peanut in Yimeng mountainous area.S.rolfsii survives the winter as mycelia and sclerotia in soil and debris,becoming the primary source of infection in the following year.The disease resistance of peanut varieties,high temperature and humidity,and cultivation measures are the pathogenic factors affecting the occurrence of peanut stem rot.The disease can be effectively controlled by screening disease-resistant varieties and seed chemical treatment,improving soil by deep tillage and crop rotation,carrying out flowing water management of affected field,cutting off transmission routes,and strengthening seed dressing and triple spraying control.展开更多
Contrary to conventional design methods that assume uniform and slow temperature changes tied to atmospheric conditions,single-layer spherical reticulated shells undergo significant non-uniform and time-variant temper...Contrary to conventional design methods that assume uniform and slow temperature changes tied to atmospheric conditions,single-layer spherical reticulated shells undergo significant non-uniform and time-variant temperature variations due to dynamic environmental coupling.These differences can affect structural performance and pose safety risks.Here,a systematic numerical method was developed and applied to simulate long-term temperature variations in such a structure under real environmental conditions,revealing its non-uniform distribution characteristics and time-variant regularity.A simplified design method for non-uniform thermal loads,accounting for time-variant environmental factors,was theoretically derived and validated through experiments and simulations.The maximum deviation and mean error rate between calculated and tested results were 6.1℃ and 3.7%,respectively.Calculated temperature fields aligned with simulated ones,with deviations under 6.0℃.Using the design method,non-uniform thermal effects of the structure are analyzed.Maximum member stress and nodal displacement under non-uniform thermal loads reached 119.3 MPa and 19.7 mm,representing increases of 167.5%and 169.9%,respectively,compared to uniform thermal loads.The impacts of healing construction time on non-uniform thermal effects were evaluated,resulting in construction recommendations.The methodologies and conclusions presented here can serve as valuable references for the thermal design,construction,and control of single-layer spherical reticulated shells or similar structures.展开更多
Hepatocyte nuclear factor 1 alpha(HNF1A),hepatocyte nuclear factor 4 alpha(HNF4A),and forkhead box protein A2(FOXA2)are key transcription factors that regulate a complex gene network in the liver,cre-ating a regulator...Hepatocyte nuclear factor 1 alpha(HNF1A),hepatocyte nuclear factor 4 alpha(HNF4A),and forkhead box protein A2(FOXA2)are key transcription factors that regulate a complex gene network in the liver,cre-ating a regulatory transcriptional loop.The Encode and ChIP-Atlas databases identify the recognition sites of these transcription factors in many glycosyltransferase genes.Our in silico analysis of HNF1A,HNF4A.and FOXA2 binding to the ten candidate glyco-genes studied in this work confirms a significant enrich-ment of these transcription factors specifically in the liver.Our previous studies identified HNF1A as a master regulator of fucosylation,glycan branching,and galactosylation of plasma glycoproteins.Here,we aimed to functionally validate the role of the three transcription factors on downstream glyco-gene transcriptional expression and the possible effect on glycan phenotype.We used the state-of-the-art clus-tered regularly interspaced short palindromic repeats/dead Cas9(CRISPR/dCas9)molecular tool for the downregulation of the HNF1A,HNF4A,and FOXA2 genes in HepG2 cells-a human liver cancer cell line.The results show that the downregulation of all three genes individually and in pairs affects the transcrip-tional activity of many glyco-genes,although downregulation of glyco-genes was not always followed by an unambiguous change in the corresponding glycan structures.The effect is better seen as an overall change in the total HepG2 N-glycome,primarily due to the extension of biantennary glycans.We propose an alternative way to evaluate the N-glycome composition via estimating the overall complexity of the glycome by quantifying the number of monomers in each glycan structure.We also propose a model showing feedback loops with the mutual activation of HNF1A-FOXA2 and HNF4A-FOXA2 affecting glyco-genes and protein glycosylation in HepG2 cells.展开更多
基金This work was supported by the National Natural Science Foundation of China(62073087,62071132,61973090).
文摘Deep matrix factorization(DMF)has been demonstrated to be a powerful tool to take in the complex hierarchical information of multi-view data(MDR).However,existing multiview DMF methods mainly explore the consistency of multi-view data,while neglecting the diversity among different views as well as the high-order relationships of data,resulting in the loss of valuable complementary information.In this paper,we design a hypergraph regularized diverse deep matrix factorization(HDDMF)model for multi-view data representation,to jointly utilize multi-view diversity and a high-order manifold in a multilayer factorization framework.A novel diversity enhancement term is designed to exploit the structural complementarity between different views of data.Hypergraph regularization is utilized to preserve the high-order geometry structure of data in each view.An efficient iterative optimization algorithm is developed to solve the proposed model with theoretical convergence analysis.Experimental results on five real-world data sets demonstrate that the proposed method significantly outperforms stateof-the-art multi-view learning approaches.
基金Ministry of Science and Technology of the People’s Republic of China for its support and guidance(Grant No.2018YFC0214100)。
文摘Aiming at the Four-Dimensional Variation source term inversion algorithm proposed earlier,the observation error regularization factor is introduced to improve the prediction accuracy of the diffusion model,and an improved Four-Dimensional Variation source term inversion algorithm with observation error regularization(OER-4DVAR STI model)is formed.Firstly,by constructing the inversion process and basic model of OER-4DVAR STI model,its basic principle and logical structure are studied.Secondly,the observation error regularization factor estimation method based on Bayesian optimization is proposed,and the error factor is separated and optimized by two parameters:error statistical time and deviation degree.Finally,the scientific,feasible and advanced nature of the OER-4DVAR STI model are verified by numerical simulation and tracer test data.The experimental results show that OER-4DVAR STI model can better reverse calculate the hazard source term information under the conditions of high atmospheric stability and flat underlying surface.Compared with the previous inversion algorithm,the source intensity estimation accuracy of OER-4DVAR STI model is improved by about 46.97%,and the source location estimation accuracy is improved by about 26.72%.
文摘The combination of structural health monitoring and vibration control is of great importance to provide components of smart structures.While synthetic algorithms have been proposed,adaptive control that is compatible with changing conditions still needs to be used,and time-varying systems are required to be simultaneously estimated with the application of adaptive control.In this research,the identification of structural time-varying dynamic characteristics and optimized simple adaptive control are integrated.First,reduced variations of physical parameters are estimated online using the multiple forgetting factor recursive least squares(MFRLS)method.Then,the energy from the structural vibration is simultaneously specified to optimize the control force with the identified parameters to be operational.Optimization is also performed based on the probability density function of the energy under the seismic excitation at any time.Finally,the optimal control force is obtained by the simple adaptive control(SAC)algorithm and energy coefficient.A numerical example and benchmark structure are employed to investigate the efficiency of the proposed approach.The simulation results revealed the effectiveness of the integrated online identification and optimal adaptive control in systems.
基金supported by the Teaching Reform Research Project of Qinghai Minzu University,China(2021-JYYB-009)the“Chunhui Plan”Cooperative Scientific Research Project of the Ministry of Education of China(2018).
文摘Link prediction has attracted wide attention among interdisciplinaryresearchers as an important issue in complex network. It aims to predict the missing links in current networks and new links that will appear in future networks.Despite the presence of missing links in the target network of link prediction studies, the network it processes remains macroscopically as a large connectedgraph. However, the complexity of the real world makes the complex networksabstracted from real systems often contain many isolated nodes. This phenomenon leads to existing link prediction methods not to efficiently implement the prediction of missing edges on isolated nodes. Therefore, the cold-start linkprediction is favored as one of the most valuable subproblems of traditional linkprediction. However, due to the loss of many links in the observation network, thetopological information available for completing the link prediction task is extremely scarce. This presents a severe challenge for the study of cold-start link prediction. Therefore, how to mine and fuse more available non-topologicalinformation from observed network becomes the key point to solve the problemof cold-start link prediction. In this paper, we propose a framework for solving thecold-start link prediction problem, a joint-weighted symmetric nonnegative matrixfactorization model fusing graph regularization information, based on low-rankapproximation algorithms in the field of machine learning. First, the nonlinear features in high-dimensional space of node attributes are captured by the designedgraph regularization term. Second, using a weighted matrix, we associate the attribute similarity and first order structure information of nodes and constrain eachother. Finally, a unified framework for implementing cold-start link prediction isconstructed by using a symmetric nonnegative matrix factorization model to integrate the multiple information extracted together. Extensive experimental validationon five real networks with attributes shows that the proposed model has very goodpredictive performance when predicting missing edges of isolated nodes.
基金supported by the National Natural Science Foundation of China(61702251,61363049,11571011)the State Scholarship Fund of China Scholarship Council(CSC)(201708360040)+3 种基金the Natural Science Foundation of Jiangxi Province(20161BAB212033)the Natural Science Basic Research Plan in Shaanxi Province of China(2018JM6030)the Doctor Scientific Research Starting Foundation of Northwest University(338050050)Youth Academic Talent Support Program of Northwest University
文摘This paper proposes a Graph regularized Lpsmooth non-negative matrix factorization(GSNMF) method by incorporating graph regularization and L_p smoothing constraint, which considers the intrinsic geometric information of a data set and produces smooth and stable solutions. The main contributions are as follows: first, graph regularization is added into NMF to discover the hidden semantics and simultaneously respect the intrinsic geometric structure information of a data set. Second,the Lpsmoothing constraint is incorporated into NMF to combine the merits of isotropic(L_2-norm) and anisotropic(L_1-norm)diffusion smoothing, and produces a smooth and more accurate solution to the optimization problem. Finally, the update rules and proof of convergence of GSNMF are given. Experiments on several data sets show that the proposed method outperforms related state-of-the-art methods.
基金the China Geological Survey Project of Chinese Oil and Gas Strategic Petroleum Prospects Investigation and Evaluation(Grant No.1211302108025—2 and No.DD20160204).
文摘There are abundant coal and coalbed methane(CBM)resources in the Xishanyao Formation in the western region of the southern Junggar Basin,and the prospects for CBM exploration and development are promising.To promote the exploration and development of the CBM resources of the Xishanyao Formation in this area,we studied previous coalfield survey data and CBM geological exploration data.Then,we analyzed the relationships between the gas content and methane concentration vs.coal seam thickness,burial depth,coal reservoir physical characteristics,hydrogeological conditions,and roof and floor lithology.In addition,we briefly discuss the main factors influencing CBM accumulation.First,we found that the coal strata of the Xishanyao Formation in the study area are relatively simple in structure,and the coal seam has a large thickness and burial depth,as well as moderately good roof and floor conditions.The hydrogeological conditions and coal reservoir physical characteristics are also conducive to the enrichment and a high yield of CBM.We believe that the preservation of CBM resources in the study area is mainly controlled by the structure,burial depth,and hydrogeological conditions.Furthermore,on the basis of the above results,the coal seam of the Xishanyao Formation in the synclinal shaft and buried at depths of 700-1000 m should be the first considered for development.
基金supported by the National Natural Science Foundation of China(No.51877013),(ZJ),(http://www.nsfc.gov.cn/)the Natural Science Foundation of Jiangsu Province(No.BK20181463),(ZJ),(http://kxjst.jiangsu.gov.cn/)sponsored by Qing Lan Project of Jiangsu Province(no specific grant number),(ZJ),(http://jyt.jiangsu.gov.cn/).
文摘Currently,functional connectomes constructed from neuroimaging data have emerged as a powerful tool in identifying brain disorders.If one brain disease just manifests as some cognitive dysfunction,it means that the disease may affect some local connectivity in the brain functional network.That is,there are functional abnormalities in the sub-network.Therefore,it is crucial to accurately identify them in pathological diagnosis.To solve these problems,we proposed a sub-network extraction method based on graph regularization nonnegative matrix factorization(GNMF).The dynamic functional networks of normal subjects and early mild cognitive impairment(eMCI)subjects were vectorized and the functional connection vectors(FCV)were assembled to aggregation matrices.Then GNMF was applied to factorize the aggregation matrix to get the base matrix,in which the column vectors were restored to a common sub-network and a distinctive sub-network,and visualization and statistical analysis were conducted on the two sub-networks,respectively.Experimental results demonstrated that,compared with other matrix factorization methods,the proposed method can more obviously reflect the similarity between the common subnetwork of eMCI subjects and normal subjects,as well as the difference between the distinctive sub-network of eMCI subjects and normal subjects,Therefore,the high-dimensional features in brain functional networks can be best represented locally in the lowdimensional space,which provides a new idea for studying brain functional connectomes.
文摘The work illustrates the impossibility of decreasing entropy in a strictly random thermodynamic process in a non-isolated system using the example of heating a planet by solar radiation flux without and taking into account its rotation around its own axis. That is, the second law of thermodynamics formulated for isolated systems continues to govern such systems. We have shown that in order to achieve a stationary state at lower values of temperature and entropy far from thermodynamic equilibrium at a maximum of temperature and entropy, it is necessary to have regular factors of nonrandom nature, one of which in this example is the rotation of the planet around its own axis. This means that the reason for the appearance of ordered structured objects in non-isolated thermodynamic systems is not the random process itself, but the action of dynamic control mechanisms, such as periodic external influences, nonlinear elements with positive feedback, catalysts for chemical reactions, etc. We present the plots with dependences of temperature and entropy versus time in non-isolated systems with purely random processes and in the presence of a control factor of non-random nature-rotation.
基金Peanut Innovation Team Project of Shandong Agricultural Industry Research System(SDAIT-05-022)Special Fund Project of Agricultural Technology Extension of Shandong Province(SDTG-2016-08).
文摘Peanut stem rot caused by Sclerotium rolfsii is a soil-borne disease,and it has become the main disease of peanut in Yimeng mountainous area.S.rolfsii survives the winter as mycelia and sclerotia in soil and debris,becoming the primary source of infection in the following year.The disease resistance of peanut varieties,high temperature and humidity,and cultivation measures are the pathogenic factors affecting the occurrence of peanut stem rot.The disease can be effectively controlled by screening disease-resistant varieties and seed chemical treatment,improving soil by deep tillage and crop rotation,carrying out flowing water management of affected field,cutting off transmission routes,and strengthening seed dressing and triple spraying control.
基金This work is supported by the National Natural Science Foundation of China(Nos.51578491 and 52238001).
文摘Contrary to conventional design methods that assume uniform and slow temperature changes tied to atmospheric conditions,single-layer spherical reticulated shells undergo significant non-uniform and time-variant temperature variations due to dynamic environmental coupling.These differences can affect structural performance and pose safety risks.Here,a systematic numerical method was developed and applied to simulate long-term temperature variations in such a structure under real environmental conditions,revealing its non-uniform distribution characteristics and time-variant regularity.A simplified design method for non-uniform thermal loads,accounting for time-variant environmental factors,was theoretically derived and validated through experiments and simulations.The maximum deviation and mean error rate between calculated and tested results were 6.1℃ and 3.7%,respectively.Calculated temperature fields aligned with simulated ones,with deviations under 6.0℃.Using the design method,non-uniform thermal effects of the structure are analyzed.Maximum member stress and nodal displacement under non-uniform thermal loads reached 119.3 MPa and 19.7 mm,representing increases of 167.5%and 169.9%,respectively,compared to uniform thermal loads.The impacts of healing construction time on non-uniform thermal effects were evaluated,resulting in construction recommendations.The methodologies and conclusions presented here can serve as valuable references for the thermal design,construction,and control of single-layer spherical reticulated shells or similar structures.
基金the European Structural and Investment Funded Grant"Cardio Metabolic"(#KK.01.2.1.02.0321)the Croatian National Centre of Research Excellence in Personalized Healthcare Grant(#KK.01.1.1.01.0010)+2 种基金the European Regional Development Fund Grant,project"CRISPR/Cas9-CasMouse"(#KK.01.1.1.04.0085)the European Structural and Investment Funded Project of Centre of Competence in Molecular Diagnostics(#KK.01.2.2.03.0006)the Croatian National Centre of Research Excellence in Personalized Healthcare Grant(#KK.01.1.1.01.0010).
文摘Hepatocyte nuclear factor 1 alpha(HNF1A),hepatocyte nuclear factor 4 alpha(HNF4A),and forkhead box protein A2(FOXA2)are key transcription factors that regulate a complex gene network in the liver,cre-ating a regulatory transcriptional loop.The Encode and ChIP-Atlas databases identify the recognition sites of these transcription factors in many glycosyltransferase genes.Our in silico analysis of HNF1A,HNF4A.and FOXA2 binding to the ten candidate glyco-genes studied in this work confirms a significant enrich-ment of these transcription factors specifically in the liver.Our previous studies identified HNF1A as a master regulator of fucosylation,glycan branching,and galactosylation of plasma glycoproteins.Here,we aimed to functionally validate the role of the three transcription factors on downstream glyco-gene transcriptional expression and the possible effect on glycan phenotype.We used the state-of-the-art clus-tered regularly interspaced short palindromic repeats/dead Cas9(CRISPR/dCas9)molecular tool for the downregulation of the HNF1A,HNF4A,and FOXA2 genes in HepG2 cells-a human liver cancer cell line.The results show that the downregulation of all three genes individually and in pairs affects the transcrip-tional activity of many glyco-genes,although downregulation of glyco-genes was not always followed by an unambiguous change in the corresponding glycan structures.The effect is better seen as an overall change in the total HepG2 N-glycome,primarily due to the extension of biantennary glycans.We propose an alternative way to evaluate the N-glycome composition via estimating the overall complexity of the glycome by quantifying the number of monomers in each glycan structure.We also propose a model showing feedback loops with the mutual activation of HNF1A-FOXA2 and HNF4A-FOXA2 affecting glyco-genes and protein glycosylation in HepG2 cells.