Neural stem cells promote neuronal regeneration and repair of brain tissue after injury,but have limited resources and proliferative ability in vivo.We hypothesized that nerve growth factor would promote in vitro prol...Neural stem cells promote neuronal regeneration and repair of brain tissue after injury,but have limited resources and proliferative ability in vivo.We hypothesized that nerve growth factor would promote in vitro proliferation of neural stem cells derived from the tree shrews,a primate-like mammal that has been proposed as an alternative to primates in biomedical translational research.We cultured neural stem cells from the hippocampus of tree shrews at embryonic day 38,and added nerve growth factor(100 μg/L) to the culture medium.Neural stem cells from the hippocampus of tree shrews cultured without nerve growth factor were used as controls.After 3 days,fluorescence microscopy after DAPI and nestin staining revealed that the number of neurospheres and DAPI/nestin-positive cells was markedly greater in the nerve growth factor-treated cells than in control cells.These findings demonstrate that nerve growth factor promotes the proliferation of neural stem cells derived from tree shrews.展开更多
Backgroud: Current understanding of injury and regeneration of islet β-cells in diabetes is mainly based on rodent studies. The tree shrew is now generally accepted as being among the closest living relatives of prim...Backgroud: Current understanding of injury and regeneration of islet β-cells in diabetes is mainly based on rodent studies. The tree shrew is now generally accepted as being among the closest living relatives of primates, and has been widely used in animal experimentation. However, there are few reports on islet cell composition and regeneration of β-cells in tree shrews.Methods: In this study, we examined the changes in islet cell composition and regeneration of β-cells after streptozotocin(STZ) treatment in tree shrews compared with Sprague-Dawley rats. Injury and regeneration of islet β-cells were observed using hematoxylin and eosin(HE) staining and immunohistochemical staining for insulin, glucagon, somatostatin and PDX-1.Results: Our data showed that in rats islet injury was most obvious on day 3 after injection, and islet morphologies were significantly restored by day 21. Regeneration of islet β-cells was very pronounced in rats, and mainly involved regeneration of centro-acinar cells and transformation of extra-islet ductal cells. In tree shrews, the regeneration of islet β-cells was not as significant. On days 3 and 7, only scattered regenerated cells were observed in the remaining islets. Further, no regeneration of centro-acinar cells was observed.Conclusion: The results suggest that the repair mechanism of islet β-cells in tree shrews is similar to that of humans.展开更多
AIM:To determine the impact of age on the morphology of endothelial cells and central corneal thickness(CCT) in Chinese tree shrew.METHODS:One-hundred and twenty eyes of 60 healthy Chinese tree shrews were studied...AIM:To determine the impact of age on the morphology of endothelial cells and central corneal thickness(CCT) in Chinese tree shrew.METHODS:One-hundred and twenty eyes of 60 healthy Chinese tree shrews were studied.Based on age,the tree shrews were divided into four groups.After general anesthesia,the images of endothelium were acquired using non-contact specular microscope Topcon 3000 P.Eight parameters of corneal endothelial cells were measured by built-in software,including CCT,endothelial cell density(ECD),percent hexagonality(HG%),coeffi cient of variability(CV),size of minimal cell(Smin),size of maximal cell(Smax),average cells size(Savg) and size standard deviation(Ssd).Data were analyzed using STATA software.The differences of eight parameters among groups and correlations with age were analyzed.RESULTS:In all studied animals,the average CCT was 2 4 9.6 ± 2 .29 μ m(202-301 μm),ECD was 308 0.72 ± 460.76 cells/mm^2(1239.6-4047.6 cells/mm^2) and CV was 29.10±7.60(13.6-54.6).CV was significantly different among different groups(P〈0.001).Strong correlation with age was found in ECD,Smax,Savg,Ssd and CV.CONCLUSION:Cornea of Chinese tree shrews had half CCT of human cornea and similar ECD,CV and size of corneal endothelial cells.Young adult tree shrews had higher ECD,HG% and low CV.ECD,Smax,Savg,Ssd and CV correlated with age signifi cantly.展开更多
Natural dyes from flame tree flower, Pawpaw leaf and their mixtures were used as sensitizers to fabricate dye-sensitized solar cells (DSSC). The photoelectrochemical performance of the Flame tree flower dye extract sh...Natural dyes from flame tree flower, Pawpaw leaf and their mixtures were used as sensitizers to fabricate dye-sensitized solar cells (DSSC). The photoelectrochemical performance of the Flame tree flower dye extract showed an open-circuit voltage (VOC) of 0.50 V, short-circuit current density (JSC) of 0.668 mA/cm2, a fill factor (FF) of 0.588 and a conversion efficiency of 0.20%. The conversion efficiency of the DSSCs prepared by pawpaw leaf extract was 0.20%, with VOC of 0.50 V;short-circuit current density, JSC of 0.649 mA/cm2 and FF of 0.605. The conversion efficiency for the flame tree flower and pawpaw leaf dye mixture was 0.27%, with VOC of 0.518 V, JSC of 0.744 mA/cm2 and FF of 0.69. Although the conversion efficiencies, Jsc and the Voc of the prepared dye cells were lower than the respective 1.185%, 7.49 mA/cm2 and 0.64V reported for ruthenium, their fill factors (FF) were higher than that of ruthenium (0.497). It was also observed that both the short-circuit current density and the fill factors of the cells were enhanced using mixed dye.展开更多
Recent histological and molecular characterization of cholangiocarcinoma(CCA) highlights the heterogeneity of this cancer that may emerge at different sites of the biliary tree and with different macroscopic or morpho...Recent histological and molecular characterization of cholangiocarcinoma(CCA) highlights the heterogeneity of this cancer that may emerge at different sites of the biliary tree and with different macroscopic or morphological features.Furthermore,different stem cell niches have been recently described in the liver and biliarytree,suggesting this as the basis of the heterogeneity of intrahepatic(IH)-and extrahepatic(EH)-CCAs,which are two largely different tumors from both biological and epidemiological points of view.The complexity of the organization of the liver stem cell compartments could underlie the CCA clinical-pathological heterogeneity and the criticisms in classifying primitive liver tumors.These recent advances highlight a possible new classification of CCAs based on cells of origin and this responds to the need of generating homogenous diagnostic,prognostic and,hopefully,therapeutic categories of IH-and EH-CCAs.展开更多
Due to lacking of test-data and field-data in reliability research during the design stage of manufacturing cell sys- tem.The degree of manufacturing cell system reliability research is increased.In order to deal with...Due to lacking of test-data and field-data in reliability research during the design stage of manufacturing cell sys- tem.The degree of manufacturing cell system reliability research is increased.In order to deal with the deficient data and the un- certainty occurred from analysis and judgment,the paper discussed a method for studying reliability of manufacturing cell system through the analysis of fuzzy fault tree,which was based on triangular fuzzy number.At last,calculation case indicated that it would have great significance for ascertaining reliability index,maintenance and establishing keeping strategy towards manufac- turing cell system.展开更多
In this paper we aim to analyse temporal variation of CD4 cell counts for HIV-infected individuals under antiretroviral therapy by using statistical methods. This is achieved by resorting to recursive binary regressio...In this paper we aim to analyse temporal variation of CD4 cell counts for HIV-infected individuals under antiretroviral therapy by using statistical methods. This is achieved by resorting to recursive binary regression tree approach [1]?[2]. This approach has made it possible to highlight the existence of several segments of the population of interest described by the interactions between the predictive covariates of the response to the treatment regimen.展开更多
The hex-cell is one of the interconnection networks used for parallel systems. The main idea of the hex-cell is that there are hexagon cells that construct the network;each one of those cells has six nodes. The perfor...The hex-cell is one of the interconnection networks used for parallel systems. The main idea of the hex-cell is that there are hexagon cells that construct the network;each one of those cells has six nodes. The performance of the network is affected by many factors one of the factors as load balancing. Until the moment of writing of this paper, there is no load balancing algorithm for this network. The proposed algorithm for dynamic load balancing on hex-cell is based on Tree Walking Algorithm (TWA) for load balancing on tree interconnection network and the ring all to all broadcast.展开更多
In Mobile Ad-Hoc Networks (MANET), the group communication for multiple senders and receivers threatens the security features. The multicasting is provoked to various security attacks, eavesdropping etc., hence secure...In Mobile Ad-Hoc Networks (MANET), the group communication for multiple senders and receivers threatens the security features. The multicasting is provoked to various security attacks, eavesdropping etc., hence secure multicasting requires imperative significance. The secure multicast tree construction using Bacterial Foraging Optimization (BPO) algorithm is proposed to develop a secure multicast tree construction in MANET. During routing, the proposed algorithm utilizes the public routing proxy to hide identity of the sender and receiver from other nodes for maintaining confidentiality. The public routing proxy is estimated using bacterial foraging optimization algorithm and path reliability is evaluated after the each iteration. Path reliability enhances the security of the network from black hole attacker and DoS attackers compared to traditional approaches for secure multicast tree formation in MANETs. By simulation results, we have shown that the proposed technique offers authentication and confidentiality during secure multicasting which is compared to conventional multicast tree formation algorithms in MANETs.展开更多
Objective:To characterize,identify and investigate the anticancer properties of two new soil fungal isolates,Emericella nidulansand Fusarium solani isolated from Wady El-Natron in Egypt against colon cancer Caco-2(ATC...Objective:To characterize,identify and investigate the anticancer properties of two new soil fungal isolates,Emericella nidulansand Fusarium solani isolated from Wady El-Natron in Egypt against colon cancer Caco-2(ATCCj cell line.Methods:Soil sample was cultured and two strains were chosen for morphological and phenotypical characterization.Partial sequences of the 18s rRNA gene and the internal transcribed spacer region ITS of the two isolates were amplified by PCR.Phylogenetic tree construction and analysis of the resulted multiple sequences from the two fugal isolates were also carried out.In vitro anticancer activity of the two strains was done against colon Caco-2 cancer cell line.Reverse transcription — PCR was carried out to detect level of expression of p53 in Caco-2 cell line.Results:HF.I displayed morphological and genotypic characteristics most similar to that of Fusarium solani while HF.2 was most similar to Emericella nidulans with high similarity of 99%and 97%respectively.The multiple sequence alignment of the two fungal isolates showed that,the maximum identical conserved domains in the 18s rRNA genes were identified with the nucleotide regions of Slst to 399th base pairs,88th to 525th base pairs respectively.While those in the ITS genes were identified with the nucleotide regions of 88th to 463rd and Slst to 274th.The two isolates showed IC<sup><</sup>sub>50</sub> value with(6.24±5.21) and(9.84±0.36) μ g/mL) concentrations respectively at 28h.Reverse transcription- PCR indicated that these cells showed high level of expression for p53 mRNA.Conclusions:The morphology and molecular analysis identified HF.1 and HF.2 to be Fusarium solani and Emericella nidulans;new isolates of anticancer producing fungi from Wady El-Natroon city in Egypt.Treatment with the two isolates caused P53 expression in Caco-2 cell line.These two isolates can be used as an anticancer agents.展开更多
Tree search is a widely used fundamental algorithm. Modern processors provide tremendous computing power by integrating multiple cores, each with a vector processing unit. This paper reviews some studies on exploiting...Tree search is a widely used fundamental algorithm. Modern processors provide tremendous computing power by integrating multiple cores, each with a vector processing unit. This paper reviews some studies on exploiting single instruction multiple date (SIMD) capacity of processors to improve the performance of tree search, and proposes several improvement methods on reported SIMD tree search algorithms. Based on blocking tree structure, blocking for memory alignment and dynamic blocking prefetch are proposed to optimize the overhead of memory access. Furthermore, as a way of non-linear loop unrolling, the search branch unwinding shows that the number of branches can exceed the data width of SIMD instructions in the SIMD search algorithm. The experiments suggest that blocking optimized SIMD tree search algorithm can achieve 1.6 times response speed faster than the un-optimized algorithm.展开更多
Wholly defined ex vivo expansion conditions for biliary tree stem cell(BTSC)organoids were established,consisting of a defined proliferative medium(DPM)used in combination with soft hyaluronan hydrogels.The DPM consis...Wholly defined ex vivo expansion conditions for biliary tree stem cell(BTSC)organoids were established,consisting of a defined proliferative medium(DPM)used in combination with soft hyaluronan hydrogels.The DPM consisted of commercially available Kubota's Medium(KM),to which a set of small molecules,particular paracrine signals,and heparan sulfate(HS)were added.The small molecules used were DNA methyltransferase inhibitor(RG108),TGF-βType I receptor inhibitor(A83-01),adenylate cyclase activator(Forskolin),and L-type Ca2+channel agonist(Bay K8644).A key paracrine signal proved to be R-spondin 1(RSPO1),a secreted protein that activates Wnts.Soluble hyaluronans,0.05%sodium hyaluronate,were used with DPM to expand monolayer cultures.Expansion of organoids was achieved by using DPM in combination with embedding organoids in Matrigel that was replaced with a defined thiol-hyaluronan triggered with PEGDA to form a hydrogel with a rheology[G*]of less than 100 Pa.The combination is called the BTSC-Expansion-Glycogel-System(BEX-gel system)for expanding BTSCs as a monolayer or as organoids.The BTSC organoids were expanded more than 3000-fold ex vivo in the BEX-gel system within 70 days while maintaining phenotypic traits indicative of stem/progenitors.Stem-cell-patch grafting of expanded BTSC organoids was performed on the livers of Fah-/-mice with tyrosinemia and resulted in the rescue of the mice and restoration of their normal liver functions.The BEX-gel system for BTSC organoid expansion provides a strategy to generate sufficient numbers of organoids for the therapeutic treatments of liver diseases.展开更多
In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in...In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in developmental biology and other related fields.Recent technological advancements,especially those in editable genomic barcodes and single-cell high-throughput sequencing,have sparked a new wave of experimental methods for reconstructing CLTs.Here we review the existing experimental approaches to the reconstruction of CLT,which are broadly categorized as either image-based or DNA barcode-based methods.In addition,we present a summary of the related literature based on the biological insight pro-vided by the obtained CLTs.Moreover,we discuss the challenges that will arise as more and better CLT data become available in the near future.Genomic barcoding-based CLT reconstructions and analyses,due to their wide applicability and high scalability,offer the potential for novel biological discoveries,especially those related to general and systemic properties of the developmental process.展开更多
基金supported by a grant from the National Key Technology Research and Development Program of the Ministry of Science and Technology of China,No.2014BAI01B00
文摘Neural stem cells promote neuronal regeneration and repair of brain tissue after injury,but have limited resources and proliferative ability in vivo.We hypothesized that nerve growth factor would promote in vitro proliferation of neural stem cells derived from the tree shrews,a primate-like mammal that has been proposed as an alternative to primates in biomedical translational research.We cultured neural stem cells from the hippocampus of tree shrews at embryonic day 38,and added nerve growth factor(100 μg/L) to the culture medium.Neural stem cells from the hippocampus of tree shrews cultured without nerve growth factor were used as controls.After 3 days,fluorescence microscopy after DAPI and nestin staining revealed that the number of neurospheres and DAPI/nestin-positive cells was markedly greater in the nerve growth factor-treated cells than in control cells.These findings demonstrate that nerve growth factor promotes the proliferation of neural stem cells derived from tree shrews.
基金Laboratory Animal Science of PLA,Grant/Award Number:SYDW[2014]-0009The National Science and Technology Support Program,Grant/Award Number:2011BAI15B01,2014BAI01B01
文摘Backgroud: Current understanding of injury and regeneration of islet β-cells in diabetes is mainly based on rodent studies. The tree shrew is now generally accepted as being among the closest living relatives of primates, and has been widely used in animal experimentation. However, there are few reports on islet cell composition and regeneration of β-cells in tree shrews.Methods: In this study, we examined the changes in islet cell composition and regeneration of β-cells after streptozotocin(STZ) treatment in tree shrews compared with Sprague-Dawley rats. Injury and regeneration of islet β-cells were observed using hematoxylin and eosin(HE) staining and immunohistochemical staining for insulin, glucagon, somatostatin and PDX-1.Results: Our data showed that in rats islet injury was most obvious on day 3 after injection, and islet morphologies were significantly restored by day 21. Regeneration of islet β-cells was very pronounced in rats, and mainly involved regeneration of centro-acinar cells and transformation of extra-islet ductal cells. In tree shrews, the regeneration of islet β-cells was not as significant. On days 3 and 7, only scattered regenerated cells were observed in the remaining islets. Further, no regeneration of centro-acinar cells was observed.Conclusion: The results suggest that the repair mechanism of islet β-cells in tree shrews is similar to that of humans.
基金Supported by the Natural Science Foundation of Yunnan Province[No.2017FE467(-195)]the National Science and Technology Support Program(No.2014BAI01B01)Yunnan Joint Support for National Program(No.2015GA009)
文摘AIM:To determine the impact of age on the morphology of endothelial cells and central corneal thickness(CCT) in Chinese tree shrew.METHODS:One-hundred and twenty eyes of 60 healthy Chinese tree shrews were studied.Based on age,the tree shrews were divided into four groups.After general anesthesia,the images of endothelium were acquired using non-contact specular microscope Topcon 3000 P.Eight parameters of corneal endothelial cells were measured by built-in software,including CCT,endothelial cell density(ECD),percent hexagonality(HG%),coeffi cient of variability(CV),size of minimal cell(Smin),size of maximal cell(Smax),average cells size(Savg) and size standard deviation(Ssd).Data were analyzed using STATA software.The differences of eight parameters among groups and correlations with age were analyzed.RESULTS:In all studied animals,the average CCT was 2 4 9.6 ± 2 .29 μ m(202-301 μm),ECD was 308 0.72 ± 460.76 cells/mm^2(1239.6-4047.6 cells/mm^2) and CV was 29.10±7.60(13.6-54.6).CV was significantly different among different groups(P〈0.001).Strong correlation with age was found in ECD,Smax,Savg,Ssd and CV.CONCLUSION:Cornea of Chinese tree shrews had half CCT of human cornea and similar ECD,CV and size of corneal endothelial cells.Young adult tree shrews had higher ECD,HG% and low CV.ECD,Smax,Savg,Ssd and CV correlated with age signifi cantly.
文摘Natural dyes from flame tree flower, Pawpaw leaf and their mixtures were used as sensitizers to fabricate dye-sensitized solar cells (DSSC). The photoelectrochemical performance of the Flame tree flower dye extract showed an open-circuit voltage (VOC) of 0.50 V, short-circuit current density (JSC) of 0.668 mA/cm2, a fill factor (FF) of 0.588 and a conversion efficiency of 0.20%. The conversion efficiency of the DSSCs prepared by pawpaw leaf extract was 0.20%, with VOC of 0.50 V;short-circuit current density, JSC of 0.649 mA/cm2 and FF of 0.605. The conversion efficiency for the flame tree flower and pawpaw leaf dye mixture was 0.27%, with VOC of 0.518 V, JSC of 0.744 mA/cm2 and FF of 0.69. Although the conversion efficiencies, Jsc and the Voc of the prepared dye cells were lower than the respective 1.185%, 7.49 mA/cm2 and 0.64V reported for ruthenium, their fill factors (FF) were higher than that of ruthenium (0.497). It was also observed that both the short-circuit current density and the fill factors of the cells were enhanced using mixed dye.
基金Supported by Research Project Grant from the University "Sapienza" of RomeFIRB grant No. RBAP10Z7FS_001+3 种基金FIRB grant No. RBAP10Z7FS_004PRIN grant No. 2009X84L84_001 (to Gaudio E)PRIN grant No. 2009X84L84_002 (to Alvaro D)Consorzio Interuniversitario Trapianti d'Organo,Rome,Italy
文摘Recent histological and molecular characterization of cholangiocarcinoma(CCA) highlights the heterogeneity of this cancer that may emerge at different sites of the biliary tree and with different macroscopic or morphological features.Furthermore,different stem cell niches have been recently described in the liver and biliarytree,suggesting this as the basis of the heterogeneity of intrahepatic(IH)-and extrahepatic(EH)-CCAs,which are two largely different tumors from both biological and epidemiological points of view.The complexity of the organization of the liver stem cell compartments could underlie the CCA clinical-pathological heterogeneity and the criticisms in classifying primitive liver tumors.These recent advances highlight a possible new classification of CCAs based on cells of origin and this responds to the need of generating homogenous diagnostic,prognostic and,hopefully,therapeutic categories of IH-and EH-CCAs.
基金Funded by Key Subject Corporate Item of Beijing Education Committee(XK100070534)
文摘Due to lacking of test-data and field-data in reliability research during the design stage of manufacturing cell sys- tem.The degree of manufacturing cell system reliability research is increased.In order to deal with the deficient data and the un- certainty occurred from analysis and judgment,the paper discussed a method for studying reliability of manufacturing cell system through the analysis of fuzzy fault tree,which was based on triangular fuzzy number.At last,calculation case indicated that it would have great significance for ascertaining reliability index,maintenance and establishing keeping strategy towards manufac- turing cell system.
文摘In this paper we aim to analyse temporal variation of CD4 cell counts for HIV-infected individuals under antiretroviral therapy by using statistical methods. This is achieved by resorting to recursive binary regression tree approach [1]?[2]. This approach has made it possible to highlight the existence of several segments of the population of interest described by the interactions between the predictive covariates of the response to the treatment regimen.
文摘The hex-cell is one of the interconnection networks used for parallel systems. The main idea of the hex-cell is that there are hexagon cells that construct the network;each one of those cells has six nodes. The performance of the network is affected by many factors one of the factors as load balancing. Until the moment of writing of this paper, there is no load balancing algorithm for this network. The proposed algorithm for dynamic load balancing on hex-cell is based on Tree Walking Algorithm (TWA) for load balancing on tree interconnection network and the ring all to all broadcast.
文摘In Mobile Ad-Hoc Networks (MANET), the group communication for multiple senders and receivers threatens the security features. The multicasting is provoked to various security attacks, eavesdropping etc., hence secure multicasting requires imperative significance. The secure multicast tree construction using Bacterial Foraging Optimization (BPO) algorithm is proposed to develop a secure multicast tree construction in MANET. During routing, the proposed algorithm utilizes the public routing proxy to hide identity of the sender and receiver from other nodes for maintaining confidentiality. The public routing proxy is estimated using bacterial foraging optimization algorithm and path reliability is evaluated after the each iteration. Path reliability enhances the security of the network from black hole attacker and DoS attackers compared to traditional approaches for secure multicast tree formation in MANETs. By simulation results, we have shown that the proposed technique offers authentication and confidentiality during secure multicasting which is compared to conventional multicast tree formation algorithms in MANETs.
文摘Objective:To characterize,identify and investigate the anticancer properties of two new soil fungal isolates,Emericella nidulansand Fusarium solani isolated from Wady El-Natron in Egypt against colon cancer Caco-2(ATCCj cell line.Methods:Soil sample was cultured and two strains were chosen for morphological and phenotypical characterization.Partial sequences of the 18s rRNA gene and the internal transcribed spacer region ITS of the two isolates were amplified by PCR.Phylogenetic tree construction and analysis of the resulted multiple sequences from the two fugal isolates were also carried out.In vitro anticancer activity of the two strains was done against colon Caco-2 cancer cell line.Reverse transcription — PCR was carried out to detect level of expression of p53 in Caco-2 cell line.Results:HF.I displayed morphological and genotypic characteristics most similar to that of Fusarium solani while HF.2 was most similar to Emericella nidulans with high similarity of 99%and 97%respectively.The multiple sequence alignment of the two fungal isolates showed that,the maximum identical conserved domains in the 18s rRNA genes were identified with the nucleotide regions of Slst to 399th base pairs,88th to 525th base pairs respectively.While those in the ITS genes were identified with the nucleotide regions of 88th to 463rd and Slst to 274th.The two isolates showed IC<sup><</sup>sub>50</sub> value with(6.24±5.21) and(9.84±0.36) μ g/mL) concentrations respectively at 28h.Reverse transcription- PCR indicated that these cells showed high level of expression for p53 mRNA.Conclusions:The morphology and molecular analysis identified HF.1 and HF.2 to be Fusarium solani and Emericella nidulans;new isolates of anticancer producing fungi from Wady El-Natroon city in Egypt.Treatment with the two isolates caused P53 expression in Caco-2 cell line.These two isolates can be used as an anticancer agents.
基金Project supported by the Shanghai Leading Academic Discipline Project(Grant No.J50103)the Graduate Student Innovation Foundation of Shanghai University(Grant No.SHUCX112167)
文摘Tree search is a widely used fundamental algorithm. Modern processors provide tremendous computing power by integrating multiple cores, each with a vector processing unit. This paper reviews some studies on exploiting single instruction multiple date (SIMD) capacity of processors to improve the performance of tree search, and proposes several improvement methods on reported SIMD tree search algorithms. Based on blocking tree structure, blocking for memory alignment and dynamic blocking prefetch are proposed to optimize the overhead of memory access. Furthermore, as a way of non-linear loop unrolling, the search branch unwinding shows that the number of branches can exceed the data width of SIMD instructions in the SIMD search algorithm. The experiments suggest that blocking optimized SIMD tree search algorithm can achieve 1.6 times response speed faster than the un-optimized algorithm.
基金Major Program of National Key Research and Development Project(2020YFA0112600,2019YFA0801502)National Natural Science Foundation of China(82173019,82270638,8220374,82300718)+1 种基金Project of Shanghai Science and Technology Commission(22ZR1451100,22Y11908500)Peak Disciplines(Type IV)of Institutions of Higher Learning in Shanghai,and Shanghai Engineering Research Center of Stem Cells Translational Medicine(20DZ2255100).
文摘Wholly defined ex vivo expansion conditions for biliary tree stem cell(BTSC)organoids were established,consisting of a defined proliferative medium(DPM)used in combination with soft hyaluronan hydrogels.The DPM consisted of commercially available Kubota's Medium(KM),to which a set of small molecules,particular paracrine signals,and heparan sulfate(HS)were added.The small molecules used were DNA methyltransferase inhibitor(RG108),TGF-βType I receptor inhibitor(A83-01),adenylate cyclase activator(Forskolin),and L-type Ca2+channel agonist(Bay K8644).A key paracrine signal proved to be R-spondin 1(RSPO1),a secreted protein that activates Wnts.Soluble hyaluronans,0.05%sodium hyaluronate,were used with DPM to expand monolayer cultures.Expansion of organoids was achieved by using DPM in combination with embedding organoids in Matrigel that was replaced with a defined thiol-hyaluronan triggered with PEGDA to form a hydrogel with a rheology[G*]of less than 100 Pa.The combination is called the BTSC-Expansion-Glycogel-System(BEX-gel system)for expanding BTSCs as a monolayer or as organoids.The BTSC organoids were expanded more than 3000-fold ex vivo in the BEX-gel system within 70 days while maintaining phenotypic traits indicative of stem/progenitors.Stem-cell-patch grafting of expanded BTSC organoids was performed on the livers of Fah-/-mice with tyrosinemia and resulted in the rescue of the mice and restoration of their normal liver functions.The BEX-gel system for BTSC organoid expansion provides a strategy to generate sufficient numbers of organoids for the therapeutic treatments of liver diseases.
基金supported by the National Key Research and Development Program of China(2021YFF1200904,2021YFA1302500 to J.-R.Y.)the National Natural Science Foundation of China(32122022,31871320 to J.-R.Y.)by Science and Technology Planning Project of Guangdong Province,China(2014A030304053 to X.Z.).
文摘In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in developmental biology and other related fields.Recent technological advancements,especially those in editable genomic barcodes and single-cell high-throughput sequencing,have sparked a new wave of experimental methods for reconstructing CLTs.Here we review the existing experimental approaches to the reconstruction of CLT,which are broadly categorized as either image-based or DNA barcode-based methods.In addition,we present a summary of the related literature based on the biological insight pro-vided by the obtained CLTs.Moreover,we discuss the challenges that will arise as more and better CLT data become available in the near future.Genomic barcoding-based CLT reconstructions and analyses,due to their wide applicability and high scalability,offer the potential for novel biological discoveries,especially those related to general and systemic properties of the developmental process.