Natural Homologous Triploidization and DNA Methylation in SARII-628,a Twin-seedling Line of Rice (Oryza sativa)

A total of five pairs of diploidotriploid twin-seedlings （a diploid seedling and a triploid seedling emerged from a grain） were selected out from 4500 pairs of seedlings from SARII-628, a twin-seedling rice line. SSR analysis indicated that no difference between the diploid seedling and corresponding triploid seedling in a twin-seedling was found at the 310 loci, indicating that there was no obvious change in DNA primary structure. A modified AFLP technique ＇MSAP （methylation-sensitive AFLP）＇ was used to analyze methylation mutation. Although no methylation mutation was noted among the five diploids, 29 methylation mutation loci were found from the corresponding triploids. This suggested that methylation mutation happened rapidly on Mogeneration after natural homologous triploidization. The mutations were classified into 10 types, including 3 increased types, 3 decreased types and 4 undecided types of methylation-degrees. The bands of 22 loci were sequenced and then those sequences were searched through website. The result showed that the methylation mutation involved into the whole rice genome and the 12 pairs of chromosomes. The mutation trend was site-related and there were different mutation loci for different triploids, which foretold that SARII-628 would have different evolution fates after natural homologous triploidization.

Special DNA Methylated Sites Between Haploid of Twin-Seedling and Its Hybrids in Rice(Oryza sativa)

DNA methylation is one of the epigenetic phenomena which can be transferred to the offspring by cell division in the evolution of organisms. The epigenetic regulation accompanied by gene expression can be found directly in the phenotype of haploidy plants. DNA cytosine methylation at the 5＇-CpCpGpG sites of haploid, Shuhui 527, Shuhui 363 and their hybrids was analyzed by methylation sensitive amplification polymorphism （MSAP） method. There were 765 DNA methylated sites detected and the methylation level was lower in hybrids than parents. Meanwhile, the different bands between hybrids and parents were analyzed and two types of methylated sites were detected, of which one inherited from haploid, and the other did not. The biological functions of genes related to methylated sites involved in cell structure, metabolize and response factor. Therefore, DNA methylated modifications can activate and silence the genes and play an important role in plant growth, development and evolution.

The microarray analysis for gene expression in haploids and diploids derived from twin-seedling rice

In this study, microarray technique was employed to analyze the gene expression at the RNA level between haploids and corresponding diploids derived from a rice twin-seedling line SARII-628. Differ- ent degrees of expression variations were observed in the plant after haploidization. The main results are as follows: (1) after haploidization, the ratio of the sensitive loci was 2.47% of the total loci designed on chip. Those loci were randomly distributed on the 12 pairs of rice chromosomes and the activated loci were more than the silenced ones. (2) Gene clusters on chromosome were observed for 33 se- quences. (3) GoPipe function classification for 575 sensitive loci revealed an involvement in the bio- logical process, cell component and molecular function. (4) RT-PCR generally validated the result from microarray with a coincidence rate of 83.78%. And for the randomly-selected activated or silenced loci in chip analysis, the coincidence rate was up to 91.86%.