[Objective]To investigate the population genetic structure of Keerqin fine wool sheep. [Method]The genetic parameters of wool traits in Keerqin fine wool sheep were calculated by employing paternal half sib correlatio...[Objective]To investigate the population genetic structure of Keerqin fine wool sheep. [Method]The genetic parameters of wool traits in Keerqin fine wool sheep were calculated by employing paternal half sib correlation method. [Results]The traits with high heritability( h≥0. 3) included wool length( 1-year old),wool yield( 1-year old) and wool yield( 2-year old); that with medium heritability( 0. 1≤h≤0. 3) included wool fineness( 1-year old),wool fineness( 2-year old),wool length( 3-year old) and wool yield( 3-year old). There were extremely significant positive correlations between wool fineness( 1-year old) and wool fineness( 2-year old),between wool fineness( 1-year old) and wool fineness( 3-year old),between wool length( 1-year old) and wool length( 2-year old),between wool length( 1-year old) and wool length( 3-year old),and between wool fineness( 2-year old) and wool fineness( 3-year old),with the correlation coefficients of 0. 653 0,0. 625 8,0. 489 6,0. 578 8,0. 578 4 and 0. 554 6 respectively. The results showed that the phenotypic correlation was poorer than genetic correlation among the wool traits. [Conclusion]The wool fineness,wool yield and body weight of Keerqin fine wool sheep all fail to meet the excellent level and need to be improved further.展开更多
As a member of the Frizzled family, Frizzled3 (FZD3) is a receptor of the canonical Wnt signaling pathway and plays a vital role in mammalian hair follicle developmental processes. However, its effects on wool traits ...As a member of the Frizzled family, Frizzled3 (FZD3) is a receptor of the canonical Wnt signaling pathway and plays a vital role in mammalian hair follicle developmental processes. However, its effects on wool traits are not clear. The objectives of this study were to identify the single nucleotide polymorphisms (SNPs) and the expression patterns of FZD3 gene, and then to determine whether it affected wool traits of Chinese Merino sheep (Xinjiang Type) or not. PCR-single stranded conformational polymorphism (PCR-SSCP) and sequencing were used to identify mutation loci, and general linear model (GLM) with SAS 9.1 was used for the association analysis between wool traits and SNPs. Quantitative real-time PCR (qRT-PCR) was used to investigate FZD3 gene expression levels. The results showed that six exons of FZD3 gene were amplified and two mutation loci were identified in exon 1 (NC_019459.2: g.101771685 T>C (SNP1)) and exon 3 (NC_019459.2: g.101810848, A>C (SNP2)), respectively. Association analysis showed that SNP1 was significantly associated with mean fiber diameter (MFD)(P=0.04) and live weight (LW)(P=0.0004), SNP2 was significantly associated with greasy fleece weight (GFW)(P=0.04). The expression level of FZD3 gene in skin tissues of the superfine wool (SF) group was significantly lower (P<0.05) than that of the fine wool (F) group. Moreover, it had a higher expression level (P<0.01) in skin tissues than in other tissues of Chinese Merino ewes. While, its expression level had a fluctuant expression in skin tissues at different developmental stages of embryos and born lambs, with the highest expression levels (P<0.01) at the 65th day of embryos. Our study revealed the genetic relationship between FZD3 variants and wool traits and two identified SNPs might serve as potential and valuable genetic markers for sheep breeding and lay a molecular genetic foundation for sheep marker-assisted selection (MAS).展开更多
To investigate the population genetic structure of Keerqin fine wool sheep, the paternal half sib correlation method was employed to estimate the body weight traits, genetic and phenotypic correlation between fleece t...To investigate the population genetic structure of Keerqin fine wool sheep, the paternal half sib correlation method was employed to estimate the body weight traits, genetic and phenotypic correlation between fleece traits in the Keerqin fine wool sheep. The results showed that the correlation coefficients were 0.690 1, 0.593 1, 0.581 2, 0.210 2 for birth weight with weaning weight, body weight at one week of age, body weight at two week of age, and body weight at three week of age, respectively. The genetic correlations were highly significant （ P 〈0.01 ） for the four pairs of traits. The correlation coefficients were 0.373 3, 0.274 1, 0.268 2 for weaning weight with body weight at one week of age, body weight at two week of age, and body weight at three week of age, respectively. The genetic correlations were also extremely significant （ P 〈 0.01 ） for the three pairs of traits. The correlation coefficients were 0.712 0, 0.805 0, 0.717 1,0.701 9, 0.531 6, 0.719 0, 0.681 3 and 0.521 3 for wool fineness at one week and two week of age, wool fineness at one week and three week of age, staple length and fleece weight at one week of age, staple length at one week and three week of age, fleece weight at one week of age and wool fineness at three week of age, wool fineness at two week and three week of age, wool fineness at two week of age and fleece weight at three week of age, and fleece weight at two week and three week of age, respectively. The high genetic correlations were extremely significant （ P 〈0. O1 ） for the eight pairs of traits. The phenotypic correlations were generally lower than the genetic correlations.展开更多
This study was to investigate the expression pattern of IGF-I gene and correlation between its SNPs and growth traits in sheep.The expression patterns of IGF-I gene in brain,muscle,skin,liver and heart of Liangshan se...This study was to investigate the expression pattern of IGF-I gene and correlation between its SNPs and growth traits in sheep.The expression patterns of IGF-I gene in brain,muscle,skin,liver and heart of Liangshan semi-wool sheep were detected at six growth stages（15,60,105,195,240 days） by employing qRT-PCR approach,and the correlation between SNPs of IGF-I gene and growth traits via SSCP method.The first inflection point of IGF-I gene expression was observed at day 105 in all five tissues.From 15-105 days IGF-I gene gave a decline-ascending trend in muscle,brain and liver,while it did not vary significantly during day 15-day 60 and was up-regulated in heart and liver at day 105.Whenafter,the expression level was down-regulated in liver,while that in muscle,heart,brain and skin assumed the second inflection point.The expression levels of IGF-I gene in brain and skin at day 195 were significantly higher than that at day 150 and day 240.These suggest the synchronous expression of IGF-I gene in all five tissues.Two SNPs located at the leader region and exon 3 of IGF-I gene were middle or low polymorphic.The SNP locus detected with primer P-1 was significantly correlated with birth weight of Liangshan semi-wool sheep（P 〈0.05）,while that detected with primer P-2 was significantly correlated with weaning weight and the weaning daily gain（P 〈 0.05）.The expression of IGF-I in all tissues had the similar developmental patterns,and strong correlation of the SNPs of IGF-I gene was confirmed with the eary growth traits to provide theoretical basis for the growth regulation and applying to assisted selective breeding with the SNPs in liangshan semi-wool sheep.展开更多
旨在利用全基因组关联分析探寻敖汉细毛羊羊毛性状新的分子标记和候选基因。本研究采集1~2周岁的健康敖汉细毛羊耳组织与羊毛作为试验素材,其中,母羊248只,公羊81只,总计329只。羊毛进行性状测定(包括纤维直径、自然长度、伸直长度、伸...旨在利用全基因组关联分析探寻敖汉细毛羊羊毛性状新的分子标记和候选基因。本研究采集1~2周岁的健康敖汉细毛羊耳组织与羊毛作为试验素材,其中,母羊248只,公羊81只,总计329只。羊毛进行性状测定(包括纤维直径、自然长度、伸直长度、伸直率),并对表型数据进行描述性统计和相关性分析。利用绵羊40K液相SNP芯片对全部个体进行基因分型。使用Plink 1.07软件对芯片数据进行质控,使用GCTA软件和PopLDdecay软件对质控数据进行群体结构分析。利用GMEMA混合线性模型对4种羊毛性状进行了全基因组关联分析(genomewide association study,GWAS),利用在线软件对候选基因进行GO和KEGG富集分析。质控后得到329只个体的30079个SNPs位点用于后续分析。通过GWAS分析筛选出4个在全基因组上显著相关的SNPs位点可能影响羊毛经济性状,分别位于1号、6号及8号染色体上。筛选出9个在染色体水平上显著相关的SNPs位点可能对羊毛性状具有潜在意义,分别位于3、5、8、11、18、21、22、25号染色体,寻找到39个可能影响羊毛性状的候选基因。本研究结果为后续探究敖汉细毛羊羊毛性状的遗传机制及分子育种标记开发提供重要参考。展开更多
基金Supported by Scientific Research Fund of Inner Mongolia University for the Nationalities(NMD1339)
文摘[Objective]To investigate the population genetic structure of Keerqin fine wool sheep. [Method]The genetic parameters of wool traits in Keerqin fine wool sheep were calculated by employing paternal half sib correlation method. [Results]The traits with high heritability( h≥0. 3) included wool length( 1-year old),wool yield( 1-year old) and wool yield( 2-year old); that with medium heritability( 0. 1≤h≤0. 3) included wool fineness( 1-year old),wool fineness( 2-year old),wool length( 3-year old) and wool yield( 3-year old). There were extremely significant positive correlations between wool fineness( 1-year old) and wool fineness( 2-year old),between wool fineness( 1-year old) and wool fineness( 3-year old),between wool length( 1-year old) and wool length( 2-year old),between wool length( 1-year old) and wool length( 3-year old),and between wool fineness( 2-year old) and wool fineness( 3-year old),with the correlation coefficients of 0. 653 0,0. 625 8,0. 489 6,0. 578 8,0. 578 4 and 0. 554 6 respectively. The results showed that the phenotypic correlation was poorer than genetic correlation among the wool traits. [Conclusion]The wool fineness,wool yield and body weight of Keerqin fine wool sheep all fail to meet the excellent level and need to be improved further.
基金supported by the National Natural Science Foundation of China (31360543 and 31760655)the earmarked fund for the China Agriculture Research System (CARS-39)+1 种基金the Open Project of Key Laboratory of Genetics Breeding and Reproduction of Xinjiang Cashmere and Wool Sheep, China (2016D03017)the Postdoctoral Science Foundation, China (2017M623287)
文摘As a member of the Frizzled family, Frizzled3 (FZD3) is a receptor of the canonical Wnt signaling pathway and plays a vital role in mammalian hair follicle developmental processes. However, its effects on wool traits are not clear. The objectives of this study were to identify the single nucleotide polymorphisms (SNPs) and the expression patterns of FZD3 gene, and then to determine whether it affected wool traits of Chinese Merino sheep (Xinjiang Type) or not. PCR-single stranded conformational polymorphism (PCR-SSCP) and sequencing were used to identify mutation loci, and general linear model (GLM) with SAS 9.1 was used for the association analysis between wool traits and SNPs. Quantitative real-time PCR (qRT-PCR) was used to investigate FZD3 gene expression levels. The results showed that six exons of FZD3 gene were amplified and two mutation loci were identified in exon 1 (NC_019459.2: g.101771685 T>C (SNP1)) and exon 3 (NC_019459.2: g.101810848, A>C (SNP2)), respectively. Association analysis showed that SNP1 was significantly associated with mean fiber diameter (MFD)(P=0.04) and live weight (LW)(P=0.0004), SNP2 was significantly associated with greasy fleece weight (GFW)(P=0.04). The expression level of FZD3 gene in skin tissues of the superfine wool (SF) group was significantly lower (P<0.05) than that of the fine wool (F) group. Moreover, it had a higher expression level (P<0.01) in skin tissues than in other tissues of Chinese Merino ewes. While, its expression level had a fluctuant expression in skin tissues at different developmental stages of embryos and born lambs, with the highest expression levels (P<0.01) at the 65th day of embryos. Our study revealed the genetic relationship between FZD3 variants and wool traits and two identified SNPs might serve as potential and valuable genetic markers for sheep breeding and lay a molecular genetic foundation for sheep marker-assisted selection (MAS).
基金Supported by Scientific Research Fund of Inner Mongolia University for the Nationalities(NMD1339)Natural Science Foundation of Inner Mongolia Autonomous Region(20080404MS0401)
文摘To investigate the population genetic structure of Keerqin fine wool sheep, the paternal half sib correlation method was employed to estimate the body weight traits, genetic and phenotypic correlation between fleece traits in the Keerqin fine wool sheep. The results showed that the correlation coefficients were 0.690 1, 0.593 1, 0.581 2, 0.210 2 for birth weight with weaning weight, body weight at one week of age, body weight at two week of age, and body weight at three week of age, respectively. The genetic correlations were highly significant （ P 〈0.01 ） for the four pairs of traits. The correlation coefficients were 0.373 3, 0.274 1, 0.268 2 for weaning weight with body weight at one week of age, body weight at two week of age, and body weight at three week of age, respectively. The genetic correlations were also extremely significant （ P 〈 0.01 ） for the three pairs of traits. The correlation coefficients were 0.712 0, 0.805 0, 0.717 1,0.701 9, 0.531 6, 0.719 0, 0.681 3 and 0.521 3 for wool fineness at one week and two week of age, wool fineness at one week and three week of age, staple length and fleece weight at one week of age, staple length at one week and three week of age, fleece weight at one week of age and wool fineness at three week of age, wool fineness at two week and three week of age, wool fineness at two week of age and fleece weight at three week of age, and fleece weight at two week and three week of age, respectively. The high genetic correlations were extremely significant （ P 〈0. O1 ） for the eight pairs of traits. The phenotypic correlations were generally lower than the genetic correlations.
基金Supported by Genetic Diversity and Phylogenetic Analysis of Tibetan Sheep(2012JY0126)
文摘This study was to investigate the expression pattern of IGF-I gene and correlation between its SNPs and growth traits in sheep.The expression patterns of IGF-I gene in brain,muscle,skin,liver and heart of Liangshan semi-wool sheep were detected at six growth stages（15,60,105,195,240 days） by employing qRT-PCR approach,and the correlation between SNPs of IGF-I gene and growth traits via SSCP method.The first inflection point of IGF-I gene expression was observed at day 105 in all five tissues.From 15-105 days IGF-I gene gave a decline-ascending trend in muscle,brain and liver,while it did not vary significantly during day 15-day 60 and was up-regulated in heart and liver at day 105.Whenafter,the expression level was down-regulated in liver,while that in muscle,heart,brain and skin assumed the second inflection point.The expression levels of IGF-I gene in brain and skin at day 195 were significantly higher than that at day 150 and day 240.These suggest the synchronous expression of IGF-I gene in all five tissues.Two SNPs located at the leader region and exon 3 of IGF-I gene were middle or low polymorphic.The SNP locus detected with primer P-1 was significantly correlated with birth weight of Liangshan semi-wool sheep（P 〈0.05）,while that detected with primer P-2 was significantly correlated with weaning weight and the weaning daily gain（P 〈 0.05）.The expression of IGF-I in all tissues had the similar developmental patterns,and strong correlation of the SNPs of IGF-I gene was confirmed with the eary growth traits to provide theoretical basis for the growth regulation and applying to assisted selective breeding with the SNPs in liangshan semi-wool sheep.
文摘旨在利用全基因组关联分析探寻敖汉细毛羊羊毛性状新的分子标记和候选基因。本研究采集1~2周岁的健康敖汉细毛羊耳组织与羊毛作为试验素材,其中,母羊248只,公羊81只,总计329只。羊毛进行性状测定(包括纤维直径、自然长度、伸直长度、伸直率),并对表型数据进行描述性统计和相关性分析。利用绵羊40K液相SNP芯片对全部个体进行基因分型。使用Plink 1.07软件对芯片数据进行质控,使用GCTA软件和PopLDdecay软件对质控数据进行群体结构分析。利用GMEMA混合线性模型对4种羊毛性状进行了全基因组关联分析(genomewide association study,GWAS),利用在线软件对候选基因进行GO和KEGG富集分析。质控后得到329只个体的30079个SNPs位点用于后续分析。通过GWAS分析筛选出4个在全基因组上显著相关的SNPs位点可能影响羊毛经济性状,分别位于1号、6号及8号染色体上。筛选出9个在染色体水平上显著相关的SNPs位点可能对羊毛性状具有潜在意义,分别位于3、5、8、11、18、21、22、25号染色体,寻找到39个可能影响羊毛性状的候选基因。本研究结果为后续探究敖汉细毛羊羊毛性状的遗传机制及分子育种标记开发提供重要参考。
