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High-throughput discovery of plastid genes causing albino phenotypes in ornamental chimeric plants
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作者 Hyun-Seung Park Jae-Hyeon Jeon +15 位作者 Woohyeon Cho Yeonjeong Lee Jee Young Park Jiseok Kim Young Sang Park Hyun Jo Koo Jung Hwa Kang Taek Joo Lee Sang Hoon Kim Jin-Baek Kim Hae-Yun Kwon Suk-Hwan Kim Nam-Chon Paek Geupil Jang Jeong-Yong Suh Tae-Jin Yang 《Horticulture Research》 SCIE CSCD 2023年第1期249-259,共11页
Chimeric plants composed of green and albino tissues have great ornamental value.To unveil the functional genes responsible for albino phenotypes in chimeric plants,we inspected the complete plastid genomes(plastomes)... Chimeric plants composed of green and albino tissues have great ornamental value.To unveil the functional genes responsible for albino phenotypes in chimeric plants,we inspected the complete plastid genomes(plastomes)in green and albino leaf tissues from 23 ornamental chimeric plants belonging to 20 species,including monocots,dicots,and gymnosperms.In nine chimeric plants,plastomes were identical between green and albino tissues.Meanwhile,another 14 chimeric plants were heteroplasmic,showing a mutation between green and albino tissues.We identified 14 different point mutations in eight functional plastid genes related to plastid-encoded RNA polymerase(rpo)or photosystems which caused albinism in the chimeric plants.Among them,12 were deleterious mutations in the target genes,in which early termination appeared due to small deletion-mediated frameshift or single nucleotide substitution.Another was single nucleotide substitution in an intron of the ycf3 and the other was a missense mutation in coding region of the rpoC2 gene.We inspected chlorophyll structure,protein functional model of the rpoC2,and expression levels of the related genes in green and albino tissues of Reynoutria japonica.A single amino acid change,histidine-to-proline substitution,in the rpoC2 protein may destabilize the peripheral helix of plastid-encoded RNA polymerase,impairing the biosynthesis of the photosynthesis system in the albino tissue of R.japonica chimera plant. 展开更多
关键词 plast substitution ORNAMENTAL
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基于核苷酸测序揭示辣椒CMS线粒体基因组结构变异 被引量:3
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作者 Yeong Deuk Jo Yoomi Choi +6 位作者 Dong-Hwan Kim Byung-Dong Kim Byoung-Cheorl Kang 刘峰 郑井元 张西露 戴雄泽 《辣椒杂志》 2014年第3期39-50,共12页
背景:胞质雄性不育(CMS)是由于线粒体基因组突变导致无功能性花粉产生的一种现象。对CMS和非CMS线粒体基因组的比较分析,揭示线粒体基因组间结构差异及因重组导致的广泛性重排具有重要意义。然而,在辣椒中与CMS相关的线粒体基因组结构及... 背景:胞质雄性不育(CMS)是由于线粒体基因组突变导致无功能性花粉产生的一种现象。对CMS和非CMS线粒体基因组的比较分析,揭示线粒体基因组间结构差异及因重组导致的广泛性重排具有重要意义。然而,在辣椒中与CMS相关的线粒体基因组结构及DNA重排机制仍不清楚。结果:获得了辣椒CMS FS4401(507 452 bp)和可育系Jeju(511 530 bp)线粒体完全基因组序列。并对辣椒、烟草线粒体基因组进行了比较分析,发现其均存在广泛的DNA重排和低保守性的非编码DNA区。FS4401和Jeju线粒体基因组比较发现,除了FS4401线粒体基因组中多了一个atp6(ψatp6-2)基因拷贝外,线粒体所有蛋白编码基因都一致。在基因组结构方面,发现两个线粒体基因组上的18个同线性序列区在基因组上存在重排,这些同线性序列区之间的序列总长度分别为30 380(FS4401)和17 847 bp(Jeju)。此前报道的CMS候选基因、orf507和ψatp6-2均位于FS4401最大特异序列片段的边界,在此区间大量的短序列片段聚集在一起,而Jeju中这些短序列表现为缺失或存在于不同的位点。连接序列片段的重复序列和重叠序列(由少数几个核苷酸组成)暗示同源重组导致的广泛性重排可能涉及到该区段的序列进化。本研究还利用其他植物种类的线粒体DNA序列进行分析,揭示CMS相关基因DNA区段的共同特征。结论:辣椒CMS和雄性可育系线粒体基因组大部分序列表现出一致性,但存在大量的基因组重排现象。辣椒CMS候选基因位于高度重排的CMS特定DNA区域的边界或重复序列附近。通过对其他物种CMS相关基因的特征分析,揭示出可能涉及到CMS相关基因进化的共同机制。 展开更多
关键词 线粒体基因组 CMS 结构变异 核苷酸测序 辣椒 全基因组序列 DNA重排 胞质雄性不育
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Arabidopsis STAY-GREEN2 Is a Negative Regulator of Chlorophyll Degradation during Leaf Senescence 被引量:20
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作者 Yasuhito Sakuraba So-Yon Park +4 位作者 Ye-Sol Kim Seung-Hyun Wang Soo-Cheul Yoo Stefan Hortensteiner Nam-Chon Paek 《Molecular Plant》 SCIE CAS CSCD 2014年第8期1288-1302,共15页
Chlorophyll (Chl) degradation causes leaf yellowing during senescence or under stress conditions. For Chl breakdown, STAY-GREEN1 (SGR1) interacts with Chl catabolic enzymes (CCEs) and light-harvesting complex II... Chlorophyll (Chl) degradation causes leaf yellowing during senescence or under stress conditions. For Chl breakdown, STAY-GREEN1 (SGR1) interacts with Chl catabolic enzymes (CCEs) and light-harvesting complex II (LHCII) at the thylakoid membrane, possibly to allow metabolic channeling of potentially phototoxic Chl breakdown intermediates. Among these Chl catabolic components, SGR1 acts as a key regulator of leaf yellowing. In addition to SGR1 (At4g22920), the Arabidopsis thaliana genome contains an additional homolog, SGR2 (At4g11910), whose biological function remains elusive. Under senescence-inducing conditions, SGR2 expression is highly up-regulated, similarly to SGR1 expression. Here we show that SGR2 function counteracts SGR1 activity in leaf Chl degradation; SGR2-overexpressing plants stayed green and the sgr2-1 knockout mutant exhibited early leaf yellowing under age-, dark-, and stress-induced senescence conditions. Like SGR1, SGR2 interacted with LHCII but, in contrast to SGR1, SGR2 interactions with CCEs were very limited. Furthermore, SGR1 and SGR2 formed homo- or heterodimers, strongly suggesting a role for SGR2 in negatively regulat- ing Chl degradation by possibly interfering with the proposed CCE-recruiting function of SGR1. Our data indicate an antagonistic evolution of the functions of SGR1 and SGR2 in Arabidopsis to balance Chl catabolism in chloroplasts with the dismantling and remobilizing of other cellular components in senescing leaf cells. 展开更多
关键词 Arabidopsis thaliana STAY-GREEN SGR1 SGR2 chlorophyll degradation leaf senescence abiotic stress.
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Heavy Metals in Brown Rice(Oryza sativa L.) and Soil After Long-Term Irrigation of Wastewater Discharged from Domestic Sewage Treatment Plants 被引量:3
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作者 B.Y.CHUNG C.H.SONG +1 位作者 B.J.PARK J.Y.CHO 《Pedosphere》 SCIE CAS CSCD 2011年第5期621-627,共7页
A pot experiment was conducted in a plastic film house to evaluate the translocation and uptake of heavy metals(Pb,Cd,Cu,and Zn) into brown rice(Oryza sativa L.) and the heavy metals residues in soils which had previo... A pot experiment was conducted in a plastic film house to evaluate the translocation and uptake of heavy metals(Pb,Cd,Cu,and Zn) into brown rice(Oryza sativa L.) and the heavy metals residues in soils which had previously been irrigated with domestic wastewater for a long time(3 years).The range of Pb,Cd,Cu,and Zn was 5.10 ± 0.01,0.105 ± 0.017,5.76 ± 0.42,and 23.56 ± 1.40 mg kg-1,respectively in the domestic wastewater-irrigated soil,and 0.370 ± 0.006,0.011 ± 0.001,0.340 ± 0.04,and 2.05 ± 0.18 mg kg-1,respectively,in the domestic wastewater-irrigated brown rice.The results indicated that application of domestic wastewater to arable land slightly increased the levels of Pb,Cd,Cu,and Zn in soil and brown rice(P < 0.01).The concentrations of heavy metals in brown rice were lower than the recommended tolerable levels proposed by the Joint FAO/WHO Expert Committee on Food Additives.However,the continuous monitoring and pollution control of hazardous materials from domestic wastewater are needed in order to prevent excessive build-up of heavy metals in the food chain. 展开更多
关键词 ACCUMULATION domestic wastewater ground water irrigation P2O5 total N
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