We used field experimental data to evaluate the ability of the agricultural production system model (APSIM) to simulate soil P availability,maize biomass and grain yield in response to P fertilizer applications on a f...We used field experimental data to evaluate the ability of the agricultural production system model (APSIM) to simulate soil P availability,maize biomass and grain yield in response to P fertilizer applications on a fluvo-aquic soil in the North China Plain.Crop and soil data from a 2-year experiment with three P fertilizer application rates(0,75 and 300 kg P_(2)O_(5) ha^(–1)) were used to calibrate the model.Sensitivity analysis was carried out to investigate the influence of APSIM SoilP parameters on the simulated P availability in soil and maize growth.Crop and soil P parameters were then derived by matching or relating the simulation results to observed crop biomass,yield,P uptake and Olsen-P in soil.The re-parameterized model was further validated against 2 years of independent data at the same sites.The re-parameterized model enabled good simulation of the maize leaf area index (LAI),biomass,grain yield,P uptake,and grain P content in response to different levels of P additions against both the calibration and validation datasets.Our results showed that APSIM needs to be re-parameterized for simulation of maize LAI dynamics through modification of leaf size curve and a reduction in the rate of leaf senescence for modern staygreen maize cultivars in China.The P concentration limits (maximum and minimum P concentrations in organs)at different stages also need to be adjusted.Our results further showed a curvilinear relationship between the measured Olsen-P concentration and simulated labile P content,which could facilitate the initialization of APSIM P pools in the NCP with Olsen-P measurements in future studies.It remains difficult to parameterize the APSIM SoilP module due to the conceptual nature of the pools and simplified conceptualization of key P transformation processes.A fundamental understanding still needs to be developed for modelling and predicting the fate of applied P fertilizers in soils with contrasting physical and chemical characteristics.展开更多
Results The population had large variations for lint yield,fibre properties,predicted yarn properties,and composite fibre quality values.Lint yield with all fibre quality traits was not correlated.When the selection w...Results The population had large variations for lint yield,fibre properties,predicted yarn properties,and composite fibre quality values.Lint yield with all fibre quality traits was not correlated.When the selection was conducted first to keep those with improved fibre quality,and followed for high yields,a large proportion in the resultant populations was the same between selections based on Cottonspec predicted yarn quality and HVI-measured fibre properties.They both exceeded the selection based on FQI and Background The approach of directly testing yarn quality to define fibre quality breeding objectives and progress the selection is attractive but difficult when considering the need for time and labour.The question remains whether yarn prediction tools from textile research can serve as an alternative.In this study,using a dataset from three seasons of field testing recombinant inbred line population,Cottonspec,a software developed by the Commonwealth Scientific and Industrial Research Organisation(CSIRO)for predicting ring spun yarn quality from fibre properties measured by High Volume Instrument(HVI),was used to select improved fibre quality and lint yield in the population.The population was derived from an advanced generation inter-crossing of four CSIRO conventional commercial varieties.The Cottonspec program was able to provide an integrated index of the fibre qualities affecting yarn properties.That was compared with selection based on HVI-measured fibre properties,and two composite fibre quality variables,namely,fibre quality index(FQI),and premium and discount(PD)points.The latter represents the net points of fibre length,strength,and micronaire based on the Premiums and Discounts Schedule used in the market while modified by the inclusion of elongation.PD points.Conclusions The population contained elite segregants with improved yield and fibre properties,and Cottonspec predicted yarn quality is useful to effectively capture these elites.There is a need to further develop yarn quality prediction tools through collaborative efforts with textile mills,to draw better connectedness between fibre and yarn quality.This connection will support the entire cotton value chain research and evolution.展开更多
Plant architecture and leaf color are important factors influencing cotton fiber yield.In this study,based on genetic analysis,stem paraffin sectioning,and phytohormone treatments,we showed that the dwarf-red(DR)cotto...Plant architecture and leaf color are important factors influencing cotton fiber yield.In this study,based on genetic analysis,stem paraffin sectioning,and phytohormone treatments,we showed that the dwarf-red(DR)cotton mutant is a gibberellin-sensitive mutant caused by a mutation in a single dominant locus,designated GhDR.Using bulked segregant analysis(BSA)and genotyping by target sequencing(GBTS)approaches,we located the causative mutation to a~197-kb genetic interval on chromosome A09 containing 25 annotated genes.Based on gene annotation and expression changes between the mutant and normal plants,GH_A09G2280 was considered to be the best candidate gene responsible for the dwarf and red mutant phenotypes.A 2-nucleotide deletion was found in the coding region of GhDR/GH_A09G2280 in the DR mutant,which caused a frameshift and truncation of GhDR.GhDR is a homolog of Arabidopsis AtBBX24,and encodes a B-box zinc finger protein.The frameshift deletion eliminated the C-terminal nuclear localization domain and the VP domain of GhDR,and altered its subcellular localization.A comparative transcriptome analysis demonstrated downregulation of the key genes involved in gibberellin biosynthesis and the signaling transduction network,as well as upregulation of the genes related to gibberellin degradation and the anthocyanin biosynthetic pathway in the DR mutant.The results of this study revealed the potential molecular basis by which plant architecture and anthocyanin accumulation are regulated in cotton.展开更多
Bruchid beetle(Callosobruchus chinensis) poses a serious threat to the production and storage of mung bean(Vigna radiata). Mapping bruchid resistance(Br) will provide an important basis for cloning the responsible gen...Bruchid beetle(Callosobruchus chinensis) poses a serious threat to the production and storage of mung bean(Vigna radiata). Mapping bruchid resistance(Br) will provide an important basis for cloning the responsible gene(s) and elucidating its functional mechanism, and will also facilitate marker-assisted selection in mung bean breeding. Here, we report the construction of the genetic linkage groups of mung bean and mapping of the Br1 locus using an RIL population derived from a cross between Berken, a bruchid-susceptible line, and ACC41, a bruchid-resistant line. A total of 560 markers were mapped onto 11 linkage groups,with 38.0% of the markers showing distorted segregation. The lengths of the linkage groups ranged from 45.2 to 117.0 c M with a total coverage of 732.9 c M and an average interval of1.3 c M between loci. Br1 was located on LG9 between BM202(0.7 c M) and Vr2-627(1.7 c M).Based on 270 shared SSR markers, most of the linkage groups were assigned to specific chromosomes. These results should further accelerate the genetic study of this crop.展开更多
The most economically important disease of cultivated grapevines worldwide is powdery mildew(PM)caused by the ascomycete fungus Erysiphe necator.The majority of grapevine cultivars used for wine,table grape,and dried ...The most economically important disease of cultivated grapevines worldwide is powdery mildew(PM)caused by the ascomycete fungus Erysiphe necator.The majority of grapevine cultivars used for wine,table grape,and dried fruit production are derived from the Eurasian grape species Vitis vinifera because of its superior aroma and flavor characteristics.However,this species has little genetic resistance against E.necator meaning that grape production is highly dependent on the frequent use of fungicides.The integration of effective genetic resistance into cultivated grapevines would lead to significant financial and environmental benefits and represents a major challenge for viticultural industries and researchers worldwide.This review will outline the strategies being used to increase our understanding of the molecular basis of V.vinifera susceptibility to this fungal pathogen.It will summarize our current knowledge of different resistance loci/genes that have evolved in wild grapevine species to restrict PM infection and assess the potential application of these defense genes in the generation of PM-resistant grapevine germplasm.Finally,it addresses future research priorities which will be important in the rapid identification,evaluation,and deployment of new PM resistance genes which are capable of conferring effective and durable resistance in the vineyard.展开更多
Weeds and weedy rice plague commercial rice fields in many countries. Developingherbicide-tolerance rice is the most efficient strategy to control weed proliferation. CRISPR/Cas9-mediated gene editing, which generates...Weeds and weedy rice plague commercial rice fields in many countries. Developingherbicide-tolerance rice is the most efficient strategy to control weed proliferation. CRISPR/Cas9-mediated gene editing, which generates small InDels and nucleotide substitutions atand around target sites using error-prone non-homologous end joining DNA repairing, hasbeen widely adopted for generation of novel crop germplasm with a wide range of geneticvariation in important agronomic traits. We created a novel herbicide-tolerance allele inrice by targeting the acetolactate synthase (OsALS) gene using CRISPR/Cas9-mediated geneediting. The novel allele (G628W) arose from a G-to-T transversion at position 1882 of OsALSand conferred a high level of herbicide tolerance. Transgene-free progeny carryinghomozygous G628W allele were identified and showed agronomic performance similar tothat of wild-type plants, suggesting that the G628W allele is a valuable resource fordeveloping elite rice varieties with strong herbicide tolerance. To promote use of the G628Wallele and to accelerate introgression and/or pyramiding of the G628W allele with other elitealleles, we developed a DNA marker for the G628W allele that accurately and robustlydistinguished homozygous from heterozygous segregants. Our result further demonstratesthe feasibility of CRISPR/Cas9-mediated gene editing in creating novel genetic variation forcrop breeding.展开更多
Background: This study investigated changes in rumen protozoal and methanogenic communities, along with the correlations among microbial taxa and methane(CH_4) production of six Belmont Red Composite beef steers fed t...Background: This study investigated changes in rumen protozoal and methanogenic communities, along with the correlations among microbial taxa and methane(CH_4) production of six Belmont Red Composite beef steers fed tea seed saponins(TSS). Animals were fed in three consecutive feeding periods, a high-grain basal diet for 14 d(BD period) then a period of progressive addition of TSS to the basal diet up to 30 g/d for 20 d(TSS period), followed by the basal diet for 13 d without TSS(BDP post-control period).Results: The study found that TSS supplementation decreased the amount of the protozoal genus Entodinium and increased Polyplastron and Eudiplodinium genera. During BDP period, the protozoa community of steers did not return to the protozoal profiles observed in BD period, with higher proportions of Metadinium and Eudiplodinium and lower Isotricha. The addition of TSS was found to change the structure of methanogen community at the subgenus level by decreasing the abundance of methanogens in the SGMT clade and increasing the abundance of methanogens in the RO clade. The correlation analysis indicated that the abundance of SGMT clade methanogens were positively correlated with Isotricha, and Isotricha genus and SGMT clade methanogens were positively correlated with CH_4 production. While RO clade were positively correlated with the proportion of Metadinium genus, which was negatively correlated with CH_4 emission.Conclusions: These results suggest that different genera of rumen protozoa ciliates appear to be selectively inhibited by TSS, and the change in methanogen community at the subgenus level may be due to the mutualistic relationships between methanogens and rumen ciliates.展开更多
Rice is one of cereal crops and a model species for monocots.Since the release of the first draft rice genome sequences in 2002,considerable progress has been achieved in rice genomic researches,thanks to rapid develo...Rice is one of cereal crops and a model species for monocots.Since the release of the first draft rice genome sequences in 2002,considerable progress has been achieved in rice genomic researches,thanks to rapid development and efficient utilization of bioinformatics methods and tools.In this review,we summarize the progress of studies of rice genome sequencing and other omics and introduce the wellmaintained bioinformatics databases and tools developed for rice genome resources and breeding.After reviewing the history of rice bioinformatics,we use single-cell sequencing and machine learning as examples showing how bioinformatics integrates emerging technologies and how it continues to develop for future rice research.展开更多
Intron-targeted gene insertion strategy using CRISPR/Cas9(clustered regularly interspaced short palindromic repeats/CRISPR-associated Cas9) has been shown to be a potential tool for crop genetic improvement by targete...Intron-targeted gene insertion strategy using CRISPR/Cas9(clustered regularly interspaced short palindromic repeats/CRISPR-associated Cas9) has been shown to be a potential tool for crop genetic improvement by targeted mutagenesis or gene replacement of an elite allele into widely cultivated rice varieties. The rice blast resistant protein Pi-ta, differs from its susceptible counterpart, pi-ta, by a single amino acid in exon 2. To create new materials resistant to the rice blast disease, we inserted a genomic fragment containing the exon 2 and 3′ untranslated region(3′ UTR) of Pi-ta into intron 1 of pi-ta in rice materials susceptible to rice blast using the intron-targeted insertion strategy. The gene insertion frequency was3.8%. Several novel transgene-free progeny with stably inherited homozygous insert were identified in the T_1 generation, which have been crossed to rice germplasm bearing other resistance gene(R gene) for pyramiding of R genes. This work verified the feasibility of using the genome editing technology in improvement of qualitative agronomic trait in crops.展开更多
Plant disease management plays an important role in achieving the sustainable development goals of the United Nations(UN)such as food security,human health,socio-economic improvement,resource conservation and ecologic...Plant disease management plays an important role in achieving the sustainable development goals of the United Nations(UN)such as food security,human health,socio-economic improvement,resource conservation and ecological resilience.However,technologies available are often limited due to different interests between producers and society and lacks of proper understanding of economic thresholds and the complex interactions among ecology,productivity and profitability.A comprehensive synergy and conflict evaluation of economic,sociological and ecological effects with technologies,productions and evolutionary principles as main components should be used to guide sustainable disease management that aims to mitigate crop and economic losses in the short term while maintaining functional farm ecosystem in the long term.Consequently,there should be an increased emphasis on technology development,public education and information exchange among governments,researchers,producers and consumers to broaden the options for disease management in the future.展开更多
Contribution of ruminants to total greenhouse gas emissions in Australia is approximately 10% and likely to increase with demand for livestock products, thus an efficient method of mitigation must be implemented. The ...Contribution of ruminants to total greenhouse gas emissions in Australia is approximately 10% and likely to increase with demand for livestock products, thus an efficient method of mitigation must be implemented. The red marine macroalgae Asparagopsis taxiformis reduces enteric methane production by up to 99% in vitro. Other macroalgae with less potent antimethanogenic properties may complement inclusion of Asparagopsis in livestock feeds. Adoption of environmental based changes in livestock systems must provide benefits to producers if change in management is to be adopted. This study used 72 h in vitro fermentations with rumen inoculum to characterize and rank seven species of macroalgae at low inclusion that previously demonstrated some degree of antimethanogenesis at higher inclusion concentration. The seven were assessed at 5% inclusion (OM basis) and in combination with Asparagopsis to evaluate beneficial effects on fermentation. When tested individually, improvements in volatile fatty acids were generally observed, however, minimal effect on gas production and no clear justification for a ranking order were demonstrated. When tested in combination with Asparagopsis, the effects on fermentation were dominated by presence of Asparagopsis at 2% and no further benefits demonstrated. Therefore, Asparagopsis remains the only macroalga inducing near elimination of methane in vitro and benefit of combinations with other macroalgae evaluated in this study was not demonstrated. However, combination with high protein macroalgae is proposed to provide productivity enhancement during seasonal lows in grass quality and thus reduce methane emissions intensity providing a stronger conduit for environmental responsibility while increasing productivity.展开更多
Fifty years of sustained investment in research and development has left the Australian cotton industry well placed to manage nitrogen(N) fertiliser. The average production in the Australian cotton industry today is g...Fifty years of sustained investment in research and development has left the Australian cotton industry well placed to manage nitrogen(N) fertiliser. The average production in the Australian cotton industry today is greater than two tonnes of lint per hectare due to improved plant genetics and crop management. However, this average yield is well below the yield that would be expected from the amount of N fertiliser used. It is clear from the recent studies that across all growing regions, conversion of fertiliser N into lint is not uniformly occurring at application rates greater than 200-240 kg·hm^(-2) of N. This indicates that factors other than N availability are limiting yield, and that the observed nitrogen fertiliser use efficiency(NFUE) values may be caused by subsoil constraints such as sodicity and compaction. There is a need to investigate the impact of subsoil constraints on yield and NFUE.Gains in NFUE will be made through improved N fertiliser application timing, better targeting the amount of fertiliser applied for the expected yield, and improved soil N management. There is also a need to improve the ability and confidence of growers to estimate the contribution of soil N mineralisation to the crop N budget. Many Australian studies including data that could theoretically be collated in a meta-analysis suggest relative NFUE values as a function of irrigation technique; however, with the extensive list of uncontrolled variables and few studies using non-furrow irrigation, this would be a poor substitute for a single field-based study directly measuring their efficacies. In irrigated cotton, a re-examination of optimal NFUE is due because of the availability of new varieties and the potential management and long-term soil resilience implications of the continued removal of mineralised soil N suggested by high NFUE values. NFUE critical limits still need to be derived for dryland systems.展开更多
In orchards, measuring crown characteristics is essential for monitoring the dynamics of tree growth and optimizing farm management. However, it lacks a rapid and reliable method of extracting the features of trees wi...In orchards, measuring crown characteristics is essential for monitoring the dynamics of tree growth and optimizing farm management. However, it lacks a rapid and reliable method of extracting the features of trees with an irregular crown shape such as trained peach trees. Here, we propose an efficient method of segmenting the individual trees and measuring the crown width and crown projection area (CPA) of peach trees with time-series information, based on gathered images. The images of peach trees were collected by unmanned aerial vehicles in an orchard in Okayama, Japan, and then the digital surface model was generated by using a Structure from Motion (SfM) and Multi-View Stereo (MVS) based software. After individual trees were identified through the use of an adaptive threshold and marker-controlled watershed segmentation in the digital surface model, the crown widths and CPA were calculated, and the accuracy was evaluated against manual delineation and field measurement, respectively. Taking manual delineation of 12 trees as reference, the root-mean-square errors of the proposed method were 0.08 m (R^(2) = 0.99) and 0.15 m (R^(2) = 0.93) for the two orthogonal crown widths, and 3.87 m2 for CPA (R^(2) = 0.89), while those taking field measurement of 44 trees as reference were 0.47 m (R^(2) = 0.91), 0.51 m (R^(2) = 0.74), and 4.96 m2 (R^(2) = 0.88). The change of growth rate of CPA showed that the peach trees grew faster from May to July than from July to September, with a wide variation in relative growth rates among trees. Not only can this method save labour by replacing field measurement, but also it can allow farmers to monitor the growth of orchard trees dynamically.展开更多
Maize growth,organ development,and yield formation are highly controlled by the manner in which the plant captures,partition,and remobilizes biomass and phosphorus(P).Better understanding of biomass and P accumulation...Maize growth,organ development,and yield formation are highly controlled by the manner in which the plant captures,partition,and remobilizes biomass and phosphorus(P).Better understanding of biomass and P accumulation,partition,and remobilization processes will improve modeling of crop resource use.However,there is still a lack of detailed data to parameterize the modeling of these processes,particula rly for modern maize cultivars.A two-year(2016 and 2017)field experiment with three P fertilization treatments(0(P0),75(P75),and 300(P300)kg P_(2)O_(5)ha^(-1))was conducted on a Fluvo-aquic soil(Quzhou,Hebei province,China)to collect data and quantify key processes for a representative modern maize cultivar(Zhengdan 958)widely grown in China.The proportions of biomass and P partitioned into various maize organs were unaffected by P application rate.Zhengdan 958 showed a much lower leaf-senescence rate than older cultivars,resulting in post-silking leaf photosynthesis being sufficient to meet grain biomass demand.In contrast,50%-85%of leaf P and 15%-50%of stem P accumulated pre-silking were remobilized into grain,in spite of the large proportion of post-silking P uptake.Our results are consistent with the theory that plants use resources according to the priority order of re-allocation from senescence followed by assimilation and uptake,with the re-translocation of reserves last.The results also enabled us to estimate the threshold P concentrations of Zhengdan 958 for modeling crop P demand.The critical leaf P concentration for individual leaves was 0.25%-0.30%,with a corresponding specific leaf P(SLP)of 75-100 mg P m^(-2).The structural P concentration for leaf was 0.01%,corresponding to an SLP of 3.8 mg P m^(-2).The maximum P concentrations of leaves and stems were 0.33%and 0.29%.The residual P concentration for stems was 0.006%.展开更多
Accurate leaf area simulation is critical for the performance of crop growth models. Area of fully expanded individual leaves of maize hybrids released before 1995 (defined as old hybrids) has been simulated using a b...Accurate leaf area simulation is critical for the performance of crop growth models. Area of fully expanded individual leaves of maize hybrids released before 1995 (defined as old hybrids) has been simulated using a bell-shaped function (BSF) and the relationship between its parameters and total leaf number (TLNO). However, modern high-yielding maize hybrids show different canopy architectures. The function parameters calibrated for old hybrids will not accurately represent modern hybrids. In this study, we evaluated these functions using a dataset including old and modern hybrids that have been widely planted in China in recent years. Maximum individual leaf area (Y_0) and corresponding leaf position (X_0) were not predicted well by TLNO (R^2= 0.56 and R^2= 0.70) for modern hybrids. Using recalibrated shape parameters a and b with values of Y_0 and X_0 for modern hybrids, the BSF accurately predicted individual leaf area (R^2= 0.95–0.99) and total leaf area of modern hybrids (R^2= 0.98). The results show that the BSF is still a robust way to predict the fully expanded leaf area of maize when parameters a and b are modified and Y_0 and X_0 are fitted. Breeding programs have led to increases in TLNO of maize but have not altered Y_0 and X_0, reducing the correlation between Y_0, X_0, and TLNO. For modern hybrids, the values of Y_0 and X_0 are hybrid-specific. Modern hybrids tend to have less-negative values of parameter a and more-positive values of parameter b in the leaf profile. Growth conditions, such as plant density and environmental conditions, also affect the fully expanded leaf area but were not considered in the original published equations. Thus, further research is needed to accurately estimate values of Y_0 and X_0 of individual modern hybrids to improve simulation of maize leaf area in crop growth models.展开更多
Organic phosphorus(P) is an important component of the soil P pool, and it has been proven to be a potential source of P for plants. The phosphorus utilization efficiency(PUE) and PUE related traits(tiller number...Organic phosphorus(P) is an important component of the soil P pool, and it has been proven to be a potential source of P for plants. The phosphorus utilization efficiency(PUE) and PUE related traits(tiller number(TN), shoot dry weight(DW), and root dry weight) under different phytate-P conditions(low phytate-P, 0.05 mmol L^-1 and normal phytate-P, 0.5 mmol L^-1) were investigated using a population consisting of 128 recombinant inbred lines(RILs) at the vegetative stage in barley. The population was derived from a cross between a P-inefficient genotype(Baudin) and a P-efficient genotype(CN4027, a Hordeum spontaneum accession). A major locus(designated Qpue.sau-3 H) conferring PUE was detected in shoots and roots from the RIL population. The quantitative trait locus(QTL) was mapped on chromosome 3 H and the allele from CN4027 confers high PUE. This locus explained up to 30.3 and 28.4% of the phenotypic variance in shoots under low and normal phytate-P conditions, respectively. It also explains 28.3 and 30.7% of the phenotypic variation in root under the low and normal phytate-P conditions, respectively. Results from this study also showed that TN was not correlated with PUE, and a QTL controlling TN was detected on chromosome 5 H. However, dry weight(DW) was significantly and positively correlated with PUE, and a QTL controlling DW was detected near the Qpue.sau-3 H locus. Based on a covariance analysis, existing data indicated that, although DW may affect PUE, different genes at this locus are likely involved in controlling these two traits.展开更多
基金funded by the National Natural Science Program of China(2022YFD1900300)the China Scholarship Council(CSC)through the CSC-CSIRO(Commonwealth Scientific and Industrial Research Organisation)Joint Ph D Program,the Zhumadian Major Scientific and Technological Innovation Project,China(170109564016)the Huanghuai University Scientific Research Foundation,China(502310020017)。
文摘We used field experimental data to evaluate the ability of the agricultural production system model (APSIM) to simulate soil P availability,maize biomass and grain yield in response to P fertilizer applications on a fluvo-aquic soil in the North China Plain.Crop and soil data from a 2-year experiment with three P fertilizer application rates(0,75 and 300 kg P_(2)O_(5) ha^(–1)) were used to calibrate the model.Sensitivity analysis was carried out to investigate the influence of APSIM SoilP parameters on the simulated P availability in soil and maize growth.Crop and soil P parameters were then derived by matching or relating the simulation results to observed crop biomass,yield,P uptake and Olsen-P in soil.The re-parameterized model was further validated against 2 years of independent data at the same sites.The re-parameterized model enabled good simulation of the maize leaf area index (LAI),biomass,grain yield,P uptake,and grain P content in response to different levels of P additions against both the calibration and validation datasets.Our results showed that APSIM needs to be re-parameterized for simulation of maize LAI dynamics through modification of leaf size curve and a reduction in the rate of leaf senescence for modern staygreen maize cultivars in China.The P concentration limits (maximum and minimum P concentrations in organs)at different stages also need to be adjusted.Our results further showed a curvilinear relationship between the measured Olsen-P concentration and simulated labile P content,which could facilitate the initialization of APSIM P pools in the NCP with Olsen-P measurements in future studies.It remains difficult to parameterize the APSIM SoilP module due to the conceptual nature of the pools and simplified conceptualization of key P transformation processes.A fundamental understanding still needs to be developed for modelling and predicting the fate of applied P fertilizers in soils with contrasting physical and chemical characteristics.
基金funded through Cotton Breeding Australia,a Joint Venture between CSIRO and Cotton Seed Distributors(Wee Waa,NSW 2388,Australia)。
文摘Results The population had large variations for lint yield,fibre properties,predicted yarn properties,and composite fibre quality values.Lint yield with all fibre quality traits was not correlated.When the selection was conducted first to keep those with improved fibre quality,and followed for high yields,a large proportion in the resultant populations was the same between selections based on Cottonspec predicted yarn quality and HVI-measured fibre properties.They both exceeded the selection based on FQI and Background The approach of directly testing yarn quality to define fibre quality breeding objectives and progress the selection is attractive but difficult when considering the need for time and labour.The question remains whether yarn prediction tools from textile research can serve as an alternative.In this study,using a dataset from three seasons of field testing recombinant inbred line population,Cottonspec,a software developed by the Commonwealth Scientific and Industrial Research Organisation(CSIRO)for predicting ring spun yarn quality from fibre properties measured by High Volume Instrument(HVI),was used to select improved fibre quality and lint yield in the population.The population was derived from an advanced generation inter-crossing of four CSIRO conventional commercial varieties.The Cottonspec program was able to provide an integrated index of the fibre qualities affecting yarn properties.That was compared with selection based on HVI-measured fibre properties,and two composite fibre quality variables,namely,fibre quality index(FQI),and premium and discount(PD)points.The latter represents the net points of fibre length,strength,and micronaire based on the Premiums and Discounts Schedule used in the market while modified by the inclusion of elongation.PD points.Conclusions The population contained elite segregants with improved yield and fibre properties,and Cottonspec predicted yarn quality is useful to effectively capture these elites.There is a need to further develop yarn quality prediction tools through collaborative efforts with textile mills,to draw better connectedness between fibre and yarn quality.This connection will support the entire cotton value chain research and evolution.
基金supported by the National Natural Science Foundation of China(32160477 and 31960412)the International S&T Cooperation Projects of BINGTUAN,China(2021BC001)the Young and Middle-aged Leaders in Scientific and Technological Innovation Foundation of Shihezi,China(2021RC02 and 2020CB010).
文摘Plant architecture and leaf color are important factors influencing cotton fiber yield.In this study,based on genetic analysis,stem paraffin sectioning,and phytohormone treatments,we showed that the dwarf-red(DR)cotton mutant is a gibberellin-sensitive mutant caused by a mutation in a single dominant locus,designated GhDR.Using bulked segregant analysis(BSA)and genotyping by target sequencing(GBTS)approaches,we located the causative mutation to a~197-kb genetic interval on chromosome A09 containing 25 annotated genes.Based on gene annotation and expression changes between the mutant and normal plants,GH_A09G2280 was considered to be the best candidate gene responsible for the dwarf and red mutant phenotypes.A 2-nucleotide deletion was found in the coding region of GhDR/GH_A09G2280 in the DR mutant,which caused a frameshift and truncation of GhDR.GhDR is a homolog of Arabidopsis AtBBX24,and encodes a B-box zinc finger protein.The frameshift deletion eliminated the C-terminal nuclear localization domain and the VP domain of GhDR,and altered its subcellular localization.A comparative transcriptome analysis demonstrated downregulation of the key genes involved in gibberellin biosynthesis and the signaling transduction network,as well as upregulation of the genes related to gibberellin degradation and the anthocyanin biosynthetic pathway in the DR mutant.The results of this study revealed the potential molecular basis by which plant architecture and anthocyanin accumulation are regulated in cotton.
基金supported by the National Natural Science Foundation of China (Nos. 30871565, 31571737)the China Agriculture Research System (No. CARS-09)the Agricultural Science and Technology Innovation Program (ASTIP) of CAAS
文摘Bruchid beetle(Callosobruchus chinensis) poses a serious threat to the production and storage of mung bean(Vigna radiata). Mapping bruchid resistance(Br) will provide an important basis for cloning the responsible gene(s) and elucidating its functional mechanism, and will also facilitate marker-assisted selection in mung bean breeding. Here, we report the construction of the genetic linkage groups of mung bean and mapping of the Br1 locus using an RIL population derived from a cross between Berken, a bruchid-susceptible line, and ACC41, a bruchid-resistant line. A total of 560 markers were mapped onto 11 linkage groups,with 38.0% of the markers showing distorted segregation. The lengths of the linkage groups ranged from 45.2 to 117.0 c M with a total coverage of 732.9 c M and an average interval of1.3 c M between loci. Br1 was located on LG9 between BM202(0.7 c M) and Vr2-627(1.7 c M).Based on 270 shared SSR markers, most of the linkage groups were assigned to specific chromosomes. These results should further accelerate the genetic study of this crop.
基金Researchers in IBD’s laboratory were supported by grants from the Australian Grape and Wine AuthorityResearch projects in WQ’s laboratory were sponsored by the USDA-NIFA grantsMissouri State University and the Missouri Wine and Grape Board.
文摘The most economically important disease of cultivated grapevines worldwide is powdery mildew(PM)caused by the ascomycete fungus Erysiphe necator.The majority of grapevine cultivars used for wine,table grape,and dried fruit production are derived from the Eurasian grape species Vitis vinifera because of its superior aroma and flavor characteristics.However,this species has little genetic resistance against E.necator meaning that grape production is highly dependent on the frequent use of fungicides.The integration of effective genetic resistance into cultivated grapevines would lead to significant financial and environmental benefits and represents a major challenge for viticultural industries and researchers worldwide.This review will outline the strategies being used to increase our understanding of the molecular basis of V.vinifera susceptibility to this fungal pathogen.It will summarize our current knowledge of different resistance loci/genes that have evolved in wild grapevine species to restrict PM infection and assess the potential application of these defense genes in the generation of PM-resistant grapevine germplasm.Finally,it addresses future research priorities which will be important in the rapid identification,evaluation,and deployment of new PM resistance genes which are capable of conferring effective and durable resistance in the vineyard.
基金This study was supported by the National Transgenic Science and Technology Program(2018ZX08001-02B)the Jiangsu Agricultural Science and Technology Innovation Fund(CX(19)3059)the Jiangsu Province Key Research and Development Program(Modern Agriculture,BE2017345-2).
文摘Weeds and weedy rice plague commercial rice fields in many countries. Developingherbicide-tolerance rice is the most efficient strategy to control weed proliferation. CRISPR/Cas9-mediated gene editing, which generates small InDels and nucleotide substitutions atand around target sites using error-prone non-homologous end joining DNA repairing, hasbeen widely adopted for generation of novel crop germplasm with a wide range of geneticvariation in important agronomic traits. We created a novel herbicide-tolerance allele inrice by targeting the acetolactate synthase (OsALS) gene using CRISPR/Cas9-mediated geneediting. The novel allele (G628W) arose from a G-to-T transversion at position 1882 of OsALSand conferred a high level of herbicide tolerance. Transgene-free progeny carryinghomozygous G628W allele were identified and showed agronomic performance similar tothat of wild-type plants, suggesting that the G628W allele is a valuable resource fordeveloping elite rice varieties with strong herbicide tolerance. To promote use of the G628Wallele and to accelerate introgression and/or pyramiding of the G628W allele with other elitealleles, we developed a DNA marker for the G628W allele that accurately and robustlydistinguished homozygous from heterozygous segregants. Our result further demonstratesthe feasibility of CRISPR/Cas9-mediated gene editing in creating novel genetic variation forcrop breeding.
基金supported by grants from the Natural Science Foundation of China (31272472)project grants from Meat & Livestock Australia,Fisheries and Forestry in Australia and Commonwealth Scientific and Industrial Research Organization (CSIRO)。
文摘Background: This study investigated changes in rumen protozoal and methanogenic communities, along with the correlations among microbial taxa and methane(CH_4) production of six Belmont Red Composite beef steers fed tea seed saponins(TSS). Animals were fed in three consecutive feeding periods, a high-grain basal diet for 14 d(BD period) then a period of progressive addition of TSS to the basal diet up to 30 g/d for 20 d(TSS period), followed by the basal diet for 13 d without TSS(BDP post-control period).Results: The study found that TSS supplementation decreased the amount of the protozoal genus Entodinium and increased Polyplastron and Eudiplodinium genera. During BDP period, the protozoa community of steers did not return to the protozoal profiles observed in BD period, with higher proportions of Metadinium and Eudiplodinium and lower Isotricha. The addition of TSS was found to change the structure of methanogen community at the subgenus level by decreasing the abundance of methanogens in the SGMT clade and increasing the abundance of methanogens in the RO clade. The correlation analysis indicated that the abundance of SGMT clade methanogens were positively correlated with Isotricha, and Isotricha genus and SGMT clade methanogens were positively correlated with CH_4 production. While RO clade were positively correlated with the proportion of Metadinium genus, which was negatively correlated with CH_4 emission.Conclusions: These results suggest that different genera of rumen protozoa ciliates appear to be selectively inhibited by TSS, and the change in methanogen community at the subgenus level may be due to the mutualistic relationships between methanogens and rumen ciliates.
基金supported by the National Natural Science Foundation of China(31971865)Zhejiang Natural Science Foundation(LZ17C130001)+1 种基金the Innovation Method Project of China(2018IM0301002)the Jiangsu Collaborative Innovation Center for Modern Crop Production。
文摘Rice is one of cereal crops and a model species for monocots.Since the release of the first draft rice genome sequences in 2002,considerable progress has been achieved in rice genomic researches,thanks to rapid development and efficient utilization of bioinformatics methods and tools.In this review,we summarize the progress of studies of rice genome sequencing and other omics and introduce the wellmaintained bioinformatics databases and tools developed for rice genome resources and breeding.After reviewing the history of rice bioinformatics,we use single-cell sequencing and machine learning as examples showing how bioinformatics integrates emerging technologies and how it continues to develop for future rice research.
基金supported by the National Transgenic Major Project of China(2018ZX08001-02B)the Key Research and Development Program of Jiangsu Province(Modern Agriculture,BE2018381-2)+1 种基金the National Science Foundation of Jiangsu Province(BK20170610)the Exploratory Project of the Jiangsu Academy of Agricultural Sciences(ZX(17)2014)。
文摘Intron-targeted gene insertion strategy using CRISPR/Cas9(clustered regularly interspaced short palindromic repeats/CRISPR-associated Cas9) has been shown to be a potential tool for crop genetic improvement by targeted mutagenesis or gene replacement of an elite allele into widely cultivated rice varieties. The rice blast resistant protein Pi-ta, differs from its susceptible counterpart, pi-ta, by a single amino acid in exon 2. To create new materials resistant to the rice blast disease, we inserted a genomic fragment containing the exon 2 and 3′ untranslated region(3′ UTR) of Pi-ta into intron 1 of pi-ta in rice materials susceptible to rice blast using the intron-targeted insertion strategy. The gene insertion frequency was3.8%. Several novel transgene-free progeny with stably inherited homozygous insert were identified in the T_1 generation, which have been crossed to rice germplasm bearing other resistance gene(R gene) for pyramiding of R genes. This work verified the feasibility of using the genome editing technology in improvement of qualitative agronomic trait in crops.
基金This work was supported by the National Natural Science Foundation of China(72073028)the Natural Science Foundation of Fujian Province of China(2018J01707).
文摘Plant disease management plays an important role in achieving the sustainable development goals of the United Nations(UN)such as food security,human health,socio-economic improvement,resource conservation and ecological resilience.However,technologies available are often limited due to different interests between producers and society and lacks of proper understanding of economic thresholds and the complex interactions among ecology,productivity and profitability.A comprehensive synergy and conflict evaluation of economic,sociological and ecological effects with technologies,productions and evolutionary principles as main components should be used to guide sustainable disease management that aims to mitigate crop and economic losses in the short term while maintaining functional farm ecosystem in the long term.Consequently,there should be an increased emphasis on technology development,public education and information exchange among governments,researchers,producers and consumers to broaden the options for disease management in the future.
文摘Contribution of ruminants to total greenhouse gas emissions in Australia is approximately 10% and likely to increase with demand for livestock products, thus an efficient method of mitigation must be implemented. The red marine macroalgae Asparagopsis taxiformis reduces enteric methane production by up to 99% in vitro. Other macroalgae with less potent antimethanogenic properties may complement inclusion of Asparagopsis in livestock feeds. Adoption of environmental based changes in livestock systems must provide benefits to producers if change in management is to be adopted. This study used 72 h in vitro fermentations with rumen inoculum to characterize and rank seven species of macroalgae at low inclusion that previously demonstrated some degree of antimethanogenesis at higher inclusion concentration. The seven were assessed at 5% inclusion (OM basis) and in combination with Asparagopsis to evaluate beneficial effects on fermentation. When tested individually, improvements in volatile fatty acids were generally observed, however, minimal effect on gas production and no clear justification for a ranking order were demonstrated. When tested in combination with Asparagopsis, the effects on fermentation were dominated by presence of Asparagopsis at 2% and no further benefits demonstrated. Therefore, Asparagopsis remains the only macroalga inducing near elimination of methane in vitro and benefit of combinations with other macroalgae evaluated in this study was not demonstrated. However, combination with high protein macroalgae is proposed to provide productivity enhancement during seasonal lows in grass quality and thus reduce methane emissions intensity providing a stronger conduit for environmental responsibility while increasing productivity.
基金funded by the Australian Government Department of Agriculture and Water Resourcesthe Cotton Research and Development Corporation's Rural Research and Development for Profit Project "More profit from nitrogen:enhancing the nutrient use efficiency of intensive cropping and pasture systems"funded by the Cotton Research and Development Corporation's PhD scholarship
文摘Fifty years of sustained investment in research and development has left the Australian cotton industry well placed to manage nitrogen(N) fertiliser. The average production in the Australian cotton industry today is greater than two tonnes of lint per hectare due to improved plant genetics and crop management. However, this average yield is well below the yield that would be expected from the amount of N fertiliser used. It is clear from the recent studies that across all growing regions, conversion of fertiliser N into lint is not uniformly occurring at application rates greater than 200-240 kg·hm^(-2) of N. This indicates that factors other than N availability are limiting yield, and that the observed nitrogen fertiliser use efficiency(NFUE) values may be caused by subsoil constraints such as sodicity and compaction. There is a need to investigate the impact of subsoil constraints on yield and NFUE.Gains in NFUE will be made through improved N fertiliser application timing, better targeting the amount of fertiliser applied for the expected yield, and improved soil N management. There is also a need to improve the ability and confidence of growers to estimate the contribution of soil N mineralisation to the crop N budget. Many Australian studies including data that could theoretically be collated in a meta-analysis suggest relative NFUE values as a function of irrigation technique; however, with the extensive list of uncontrolled variables and few studies using non-furrow irrigation, this would be a poor substitute for a single field-based study directly measuring their efficacies. In irrigated cotton, a re-examination of optimal NFUE is due because of the availability of new varieties and the potential management and long-term soil resilience implications of the continued removal of mineralised soil N suggested by high NFUE values. NFUE critical limits still need to be derived for dryland systems.
基金This study was partially funded by the“Collaboration Research Program of IDEAS”,Chubu University(IDEAS 201603 and IDEAS201702)the CREST Program“Knowledge Discovery by Constructing AgriBigData”(JPMJCR1512)the SICORP Program“Data Science-based Farming Support System for Sustainable Crop Production under Climatic Change”of the Japan Science and Technology Agency.
文摘In orchards, measuring crown characteristics is essential for monitoring the dynamics of tree growth and optimizing farm management. However, it lacks a rapid and reliable method of extracting the features of trees with an irregular crown shape such as trained peach trees. Here, we propose an efficient method of segmenting the individual trees and measuring the crown width and crown projection area (CPA) of peach trees with time-series information, based on gathered images. The images of peach trees were collected by unmanned aerial vehicles in an orchard in Okayama, Japan, and then the digital surface model was generated by using a Structure from Motion (SfM) and Multi-View Stereo (MVS) based software. After individual trees were identified through the use of an adaptive threshold and marker-controlled watershed segmentation in the digital surface model, the crown widths and CPA were calculated, and the accuracy was evaluated against manual delineation and field measurement, respectively. Taking manual delineation of 12 trees as reference, the root-mean-square errors of the proposed method were 0.08 m (R^(2) = 0.99) and 0.15 m (R^(2) = 0.93) for the two orthogonal crown widths, and 3.87 m2 for CPA (R^(2) = 0.89), while those taking field measurement of 44 trees as reference were 0.47 m (R^(2) = 0.91), 0.51 m (R^(2) = 0.74), and 4.96 m2 (R^(2) = 0.88). The change of growth rate of CPA showed that the peach trees grew faster from May to July than from July to September, with a wide variation in relative growth rates among trees. Not only can this method save labour by replacing field measurement, but also it can allow farmers to monitor the growth of orchard trees dynamically.
基金financially supported by the National Key Research and Development Program of China(2017YFD0200200,2017YFD0200202)the National Natural Science Foundation of China(31960627)+1 种基金support from the Australia-China Joint Research Centre-Healthy Soils for Sustainable Food Production and Environmental Quality(ACSRF48165)the CSIRO and Chinese Academy of Agricultural Sciences(CAAS)through the research project"Scientific Benchmarks for Sustainable Agricultural Intensification"for financial support。
文摘Maize growth,organ development,and yield formation are highly controlled by the manner in which the plant captures,partition,and remobilizes biomass and phosphorus(P).Better understanding of biomass and P accumulation,partition,and remobilization processes will improve modeling of crop resource use.However,there is still a lack of detailed data to parameterize the modeling of these processes,particula rly for modern maize cultivars.A two-year(2016 and 2017)field experiment with three P fertilization treatments(0(P0),75(P75),and 300(P300)kg P_(2)O_(5)ha^(-1))was conducted on a Fluvo-aquic soil(Quzhou,Hebei province,China)to collect data and quantify key processes for a representative modern maize cultivar(Zhengdan 958)widely grown in China.The proportions of biomass and P partitioned into various maize organs were unaffected by P application rate.Zhengdan 958 showed a much lower leaf-senescence rate than older cultivars,resulting in post-silking leaf photosynthesis being sufficient to meet grain biomass demand.In contrast,50%-85%of leaf P and 15%-50%of stem P accumulated pre-silking were remobilized into grain,in spite of the large proportion of post-silking P uptake.Our results are consistent with the theory that plants use resources according to the priority order of re-allocation from senescence followed by assimilation and uptake,with the re-translocation of reserves last.The results also enabled us to estimate the threshold P concentrations of Zhengdan 958 for modeling crop P demand.The critical leaf P concentration for individual leaves was 0.25%-0.30%,with a corresponding specific leaf P(SLP)of 75-100 mg P m^(-2).The structural P concentration for leaf was 0.01%,corresponding to an SLP of 3.8 mg P m^(-2).The maximum P concentrations of leaves and stems were 0.33%and 0.29%.The residual P concentration for stems was 0.006%.
基金the National Basic Research Program of China (973-2015CB150400)the National Institute of Food and Agriculture (ALA014-1-16016)U.S. Department of Agriculture,Hatch project under ALA014-1-16016
文摘Accurate leaf area simulation is critical for the performance of crop growth models. Area of fully expanded individual leaves of maize hybrids released before 1995 (defined as old hybrids) has been simulated using a bell-shaped function (BSF) and the relationship between its parameters and total leaf number (TLNO). However, modern high-yielding maize hybrids show different canopy architectures. The function parameters calibrated for old hybrids will not accurately represent modern hybrids. In this study, we evaluated these functions using a dataset including old and modern hybrids that have been widely planted in China in recent years. Maximum individual leaf area (Y_0) and corresponding leaf position (X_0) were not predicted well by TLNO (R^2= 0.56 and R^2= 0.70) for modern hybrids. Using recalibrated shape parameters a and b with values of Y_0 and X_0 for modern hybrids, the BSF accurately predicted individual leaf area (R^2= 0.95–0.99) and total leaf area of modern hybrids (R^2= 0.98). The results show that the BSF is still a robust way to predict the fully expanded leaf area of maize when parameters a and b are modified and Y_0 and X_0 are fitted. Breeding programs have led to increases in TLNO of maize but have not altered Y_0 and X_0, reducing the correlation between Y_0, X_0, and TLNO. For modern hybrids, the values of Y_0 and X_0 are hybrid-specific. Modern hybrids tend to have less-negative values of parameter a and more-positive values of parameter b in the leaf profile. Growth conditions, such as plant density and environmental conditions, also affect the fully expanded leaf area but were not considered in the original published equations. Thus, further research is needed to accurately estimate values of Y_0 and X_0 of individual modern hybrids to improve simulation of maize leaf area in crop growth models.
基金supported by the National Natural Science Foundation of China (31401377)the Science and Technology Project of Sichuan Province, China (2017JY0126)the Key Project of Education Department of Sichuan Province, China (14ZA0002)
文摘Organic phosphorus(P) is an important component of the soil P pool, and it has been proven to be a potential source of P for plants. The phosphorus utilization efficiency(PUE) and PUE related traits(tiller number(TN), shoot dry weight(DW), and root dry weight) under different phytate-P conditions(low phytate-P, 0.05 mmol L^-1 and normal phytate-P, 0.5 mmol L^-1) were investigated using a population consisting of 128 recombinant inbred lines(RILs) at the vegetative stage in barley. The population was derived from a cross between a P-inefficient genotype(Baudin) and a P-efficient genotype(CN4027, a Hordeum spontaneum accession). A major locus(designated Qpue.sau-3 H) conferring PUE was detected in shoots and roots from the RIL population. The quantitative trait locus(QTL) was mapped on chromosome 3 H and the allele from CN4027 confers high PUE. This locus explained up to 30.3 and 28.4% of the phenotypic variance in shoots under low and normal phytate-P conditions, respectively. It also explains 28.3 and 30.7% of the phenotypic variation in root under the low and normal phytate-P conditions, respectively. Results from this study also showed that TN was not correlated with PUE, and a QTL controlling TN was detected on chromosome 5 H. However, dry weight(DW) was significantly and positively correlated with PUE, and a QTL controlling DW was detected near the Qpue.sau-3 H locus. Based on a covariance analysis, existing data indicated that, although DW may affect PUE, different genes at this locus are likely involved in controlling these two traits.