Kinetic Monte Carlo(KMC)is a stochastic model used to simulate crystal growth.However,most KMC models rely on a pre-defined lattice that neglects dislocations,lattice mismatch and strain effects.In this paper,we inves...Kinetic Monte Carlo(KMC)is a stochastic model used to simulate crystal growth.However,most KMC models rely on a pre-defined lattice that neglects dislocations,lattice mismatch and strain effects.In this paper,we investigate the use of a 3D off-lattice KMC algorithm.We test this method by investigating impurity diffusion in a strained FCC nanowire.While faster than a molecular dynamics simulation,the most general implementation of off-lattice KMC is much slower than a lattice-based algorithm.An improved procedure is achieved for weakly strained systems by precomputing approximate saddle point locations based on unstrained lattice structures.In this way,one gives up some of the flexibility of the general method to restore some of the computational speed of lattice-based KMC.In addition to providing an alternative approach to nano-materials simulation,this type of simulation will be useful for testing and calibrating methods that seek to parameterize the variation in the transition rates for lattice-based KMC using continuum modeling.展开更多
We present an efficient algorithm for calculating the minimum energy path(MEP)and energy barriers between local minima on a multidimensional potential energy surface(PES).Such paths play a central role in the understa...We present an efficient algorithm for calculating the minimum energy path(MEP)and energy barriers between local minima on a multidimensional potential energy surface(PES).Such paths play a central role in the understanding of transition pathways between metastable states.Our method relies on the original formulation of the string method[Phys.Rev.B,66,052301(2002)],i.e.to evolve a smooth curve along a direction normal to the curve.The algorithm works by performing minimization steps on hyperplanes normal to the curve.Therefore the problem of finding MEP on the PES is remodeled as a set of constrained minimization problems.This provides the flexibility of using minimization algorithms faster than the steepest descent method used in the simplified string method[J.Chem.Phys.,126(16),164103(2007)].At the same time,it provides a more direct analog of the finite temperature string method.The applicability of the algorithm is demonstrated using various examples.展开更多
This paper gives a systematic introduction to HMM,the heterogeneous multiscale methods,including the fundamental design principles behind the HMM philosophy and the main obstacles that have to be overcome when using H...This paper gives a systematic introduction to HMM,the heterogeneous multiscale methods,including the fundamental design principles behind the HMM philosophy and the main obstacles that have to be overcome when using HMM for a particular problem.This is illustrated by examples from several application areas,including complex fluids,micro-fluidics,solids,interface problems,stochastic problems,and statistically self-similar problems.Emphasis is given to the technical tools,such as the various constrained molecular dynamics,that have been developed,in order to apply HMM to these problems.Examples of mathematical results on the error analysis of HMM are presented.The review ends with a discussion on some of the problems that have to be solved in order to make HMM a more powerful tool.展开更多
To fill the gap between accurate(and expensive)ab initio calculations and efficient atomistic simulations based on empirical interatomic potentials,a new class of descriptions of atomic interactions has emerged and be...To fill the gap between accurate(and expensive)ab initio calculations and efficient atomistic simulations based on empirical interatomic potentials,a new class of descriptions of atomic interactions has emerged and been widely applied;i.e.machine learning potentials(MLPs).One recently developed type of MLP is the deep potential(DP)method.In this review,we provide an introduction to DP methods in computational materials science.The theory underlying the DP method is presented along with a step-by-step introduction to their development and use.We also review materials applications of DPs in a wide range of materials systems.The DP Library provides a platform for the development of DPs and a database of extant DPs.We discuss the accuracy and efficiency of DPs compared with ab initio methods and empirical potentials.展开更多
The behavior of interacting electrons in a perfect crystal under macroscopic external electric and magnetic fields is studied. Effective Maxwell equations for the macroscopic electric and magnetic fields are derived s...The behavior of interacting electrons in a perfect crystal under macroscopic external electric and magnetic fields is studied. Effective Maxwell equations for the macroscopic electric and magnetic fields are derived starting from time-dependent density functional theory. Effective permittivity and permeability coefficients are obtained.展开更多
基金supported by a grant from DOE(DE-FG02-03ER2558).
文摘Kinetic Monte Carlo(KMC)is a stochastic model used to simulate crystal growth.However,most KMC models rely on a pre-defined lattice that neglects dislocations,lattice mismatch and strain effects.In this paper,we investigate the use of a 3D off-lattice KMC algorithm.We test this method by investigating impurity diffusion in a strained FCC nanowire.While faster than a molecular dynamics simulation,the most general implementation of off-lattice KMC is much slower than a lattice-based algorithm.An improved procedure is achieved for weakly strained systems by precomputing approximate saddle point locations based on unstrained lattice structures.In this way,one gives up some of the flexibility of the general method to restore some of the computational speed of lattice-based KMC.In addition to providing an alternative approach to nano-materials simulation,this type of simulation will be useful for testing and calibrating methods that seek to parameterize the variation in the transition rates for lattice-based KMC using continuum modeling.
基金support by the Department of Energy under Grant No.DE-SC0002623.
文摘We present an efficient algorithm for calculating the minimum energy path(MEP)and energy barriers between local minima on a multidimensional potential energy surface(PES).Such paths play a central role in the understanding of transition pathways between metastable states.Our method relies on the original formulation of the string method[Phys.Rev.B,66,052301(2002)],i.e.to evolve a smooth curve along a direction normal to the curve.The algorithm works by performing minimization steps on hyperplanes normal to the curve.Therefore the problem of finding MEP on the PES is remodeled as a set of constrained minimization problems.This provides the flexibility of using minimization algorithms faster than the steepest descent method used in the simplified string method[J.Chem.Phys.,126(16),164103(2007)].At the same time,it provides a more direct analog of the finite temperature string method.The applicability of the algorithm is demonstrated using various examples.
基金supported in part by NSF grant DMS99-73341The work of Xiantao Li is supported in part by ONR grant N00014-01-1-0674 and DOE grant DE-FG02-03ER25587The work of Vanden-Eijnden is supported in part by NSF grants DMS02-09959 and DMS02-39625.
文摘This paper gives a systematic introduction to HMM,the heterogeneous multiscale methods,including the fundamental design principles behind the HMM philosophy and the main obstacles that have to be overcome when using HMM for a particular problem.This is illustrated by examples from several application areas,including complex fluids,micro-fluidics,solids,interface problems,stochastic problems,and statistically self-similar problems.Emphasis is given to the technical tools,such as the various constrained molecular dynamics,that have been developed,in order to apply HMM to these problems.Examples of mathematical results on the error analysis of HMM are presented.The review ends with a discussion on some of the problems that have to be solved in order to make HMM a more powerful tool.
基金T W and D J S gratefully acknowledge the support of the Research Grants Council,Hong Kong SAR,through the Collaborative Research Fund Project No.8730054The work of H W is supported by the National Science Foundation of China under Grant Nos.11871110 and 12122103The work of W E is supported in part by a gift from iFlytek to Princeton University。
文摘To fill the gap between accurate(and expensive)ab initio calculations and efficient atomistic simulations based on empirical interatomic potentials,a new class of descriptions of atomic interactions has emerged and been widely applied;i.e.machine learning potentials(MLPs).One recently developed type of MLP is the deep potential(DP)method.In this review,we provide an introduction to DP methods in computational materials science.The theory underlying the DP method is presented along with a step-by-step introduction to their development and use.We also review materials applications of DPs in a wide range of materials systems.The DP Library provides a platform for the development of DPs and a database of extant DPs.We discuss the accuracy and efficiency of DPs compared with ab initio methods and empirical potentials.
基金supported by the National Natural Science Foundation of China(11725415 and 11934001)the Ministry of Science and Technology of China(2018YFA0305601 and2016YFA0301004)+1 种基金by the Strategic Priority Research Program of the Chinese Academy of Sciences(XDB28000000)supported in part by the Center for Chemistry in Solution and at Interfaces(CSI)at Princeton University,funded by the DOE Award DE-SC0019394。
文摘The behavior of interacting electrons in a perfect crystal under macroscopic external electric and magnetic fields is studied. Effective Maxwell equations for the macroscopic electric and magnetic fields are derived starting from time-dependent density functional theory. Effective permittivity and permeability coefficients are obtained.