Estuaries are environments where freshwater and seawater mix and they display various salinity profiles.The construction of river barrages and dams has rapidly changed these environments and has had a wide range of im...Estuaries are environments where freshwater and seawater mix and they display various salinity profiles.The construction of river barrages and dams has rapidly changed these environments and has had a wide range of impacts on plankton communities.To understand the dynamics of such communities,researchers need accurate and rapid techniques for detecting plankton species.We evaluated the diversity of eukaryotic plankton over a salinity gradient by applying a metagenomics tool at the Nakdong River estuary in Korea.Environmental samples were collected on three dates during summer and autumn of 2011 at the Eulsukdo Bridge at the mouth of that river.Amplifying the 18 S rDNA allowed us to analyze 456 clones and 122 phylotypes.Metagenomic sequences revealed various taxonomic groups and cryptic genetic variations at the intra-and inter-specific levels.By analyzing the same station at each sampling date,we observed that the phylotypes presented a salinity-related pattern of diversity in assemblages.The variety of species within freshwater samples reflected the rapid environmental changes caused by freshwater inputs.Dinophyceae phylotypes accounted for the highest proportion of overall diversity in the seawater samples.Euryhaline diatoms and dinoflagellates were observed in the freshwater,brackish and seawater samples.The biological data for species composition demonstrate the transitional state between freshwater and seawater.Therefore,this metagenomics information can serve as a biological indicator for tracking changes in aquatic environments.展开更多
基金Supported by the East Asian Seas Time Series-I(No.EAST-I)the Ministry of Oceans and Fisheries,Korea,the"Development of Microbial Metagenomic Techniques for a Fine-Scale Seawater Mass Analysis"through the Ministry of Education of the Republic of Koreathe National Research Foundation of Korea(No.NRF-2013R1A1A2006915)
文摘Estuaries are environments where freshwater and seawater mix and they display various salinity profiles.The construction of river barrages and dams has rapidly changed these environments and has had a wide range of impacts on plankton communities.To understand the dynamics of such communities,researchers need accurate and rapid techniques for detecting plankton species.We evaluated the diversity of eukaryotic plankton over a salinity gradient by applying a metagenomics tool at the Nakdong River estuary in Korea.Environmental samples were collected on three dates during summer and autumn of 2011 at the Eulsukdo Bridge at the mouth of that river.Amplifying the 18 S rDNA allowed us to analyze 456 clones and 122 phylotypes.Metagenomic sequences revealed various taxonomic groups and cryptic genetic variations at the intra-and inter-specific levels.By analyzing the same station at each sampling date,we observed that the phylotypes presented a salinity-related pattern of diversity in assemblages.The variety of species within freshwater samples reflected the rapid environmental changes caused by freshwater inputs.Dinophyceae phylotypes accounted for the highest proportion of overall diversity in the seawater samples.Euryhaline diatoms and dinoflagellates were observed in the freshwater,brackish and seawater samples.The biological data for species composition demonstrate the transitional state between freshwater and seawater.Therefore,this metagenomics information can serve as a biological indicator for tracking changes in aquatic environments.
