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酶反应速率方程的普适形式 被引量:3
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作者 徐岷涓 朱晓梅 +1 位作者 林保宏 敖平 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2011年第8期759-767,共9页
酶反应速率方程的普适形式是应用于相互关联的大规模代谢途径动力学建模的重要方法.把酶反应速率方程写成Michaelis-Menten-King-Altman方程形式可以使得动力学参数(或函数)容易与数据库中的实验数据相接轨,并可以处理任意数量的底物和... 酶反应速率方程的普适形式是应用于相互关联的大规模代谢途径动力学建模的重要方法.把酶反应速率方程写成Michaelis-Menten-King-Altman方程形式可以使得动力学参数(或函数)容易与数据库中的实验数据相接轨,并可以处理任意数量的底物和产物,有利于大规模的计算.普适形式可以同时描述正、负反应方向,并能精确地用于准稳态条件.展示了在三类生物体系中广泛存在的酶反应机制中普适方程的严格推导过程,并讨论了普适方程的特点,针对不可逆反应酶反应产生的产物抑制效应可以自然消除,总结了在普适速率方程中体现调节剂的作用和协同作用. 展开更多
关键词 普适酶反应速率方程 动力学模型 系统生物学 酶动力学
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From Phage lambda to human cancer: endogenous molecular-cellular network hypothesis 被引量:4
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作者 Gaowei Wang Xiaomei Zhu +1 位作者 Leroy Hood Ping Ao 《Frontiers of Electrical and Electronic Engineering in China》 2013年第1期32-49,共18页
Experimental evidences and theoretical analyses have amply suggested that in cancer genesis and progression genetic information is very important but not the whole. Nevertheless, "cancer as a disease of the genome" ... Experimental evidences and theoretical analyses have amply suggested that in cancer genesis and progression genetic information is very important but not the whole. Nevertheless, "cancer as a disease of the genome" is still currently the dominant doctrine. With such a background and based on the fundamental properties of biological systems, a new endogenous molecular-cellular network theory for cancer was recently proposed by us. Similar proposals were also made by others. The new theory attempts to incorporate both genetic and environmental effects into one single framework, with the possibility to give a quantitative and dynamical description. It is asserted that the complex regulatory machinery behind biological processes may be modeled by a nonlinear stochastic dynamical system similar to a noise perturbed Morse-Smale system. Both qualitative and quantitative descriptions may be obtained. The dynamical variables are specified by a set of endogenous molecular-cellular agents and the structure of the dynamical system by the interactions among those biological agents. Here we review this theory from a pedagogical angle which emphasizes the role of modularization, hierarchy and autonomous regulation. We discuss how the core set of assumptions is exemplified in detail in one of the simple, important and well studied model organisms, Phage lambda. With this concrete and quantitative example in hand, we show that the application of the hypothesized theory in human cancer, such as hepatocellular carcinoma (HCC), is plausible, and that it may provide a set of new insights on understanding cancer genesis and progression, and on strategies for cancer prevention, cure, and care. 展开更多
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