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Effects of different inputs of organic matter on the response of plant production to a soil water stress in Sahelian region 被引量:1
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作者 Abdoulaye Badiane Ndeye Yacine Badiane Ndour +3 位作者 Fatou Guèye Saliou Faye Ibrahima Ndoye Dominique Masse 《Natural Science》 2012年第12期969-975,共7页
The aim was to study the effects of organic management like the application of organic matters on crop production. This research is placed in the context of climate change impact mitigation. A field experiment was con... The aim was to study the effects of organic management like the application of organic matters on crop production. This research is placed in the context of climate change impact mitigation. A field experiment was conducted during the dry season. Rainfall inputs were simulated by irrigation to study the effects of water stress during the flowering period of a grain on the agronomic and the physiological behavior of the plant. The measurements were made on the volumetric soil moisture, stomatal conductance, and leaf area index (LAI), grain yield, straw and weight of 100 grains. The water use efficiency (WUE) and yield losses were evaluated. The results of the volumetric soil moisture showed that the use of localized input under water stress (STR-T1) recorded the lowest moisture in the surface horizons. Treatment with localized input under water stress with or without fertilization (STR-T1, STR-T1 + N) showed an ability of stomatal regulation compared to the control (STR- T0) and the input application by spreading (STR- T2). (STR-T1 + N) has initiated an early stomatal closure of the plant because of the effect of nitrogen. However, despite a more pronounced water stress with stomatal closure, the LAI and the grain yield were greater with (STR-T1) and (STR-T1 + N). The results showed that the inputs of localized organic fertilization with or without nitrogen grain yields were the highest regardless of the hydric regime applied. However the losses of grain yield were higher in treatments with organic inputs in spreading and localized under water stress. The WUE by the crop was reduced compared to the control with organic inputs under STR. In this study we show that the use of organic matter increases de farmers risk and this notion of risk is high and it is necessary to consider this risk in the proposals of technical innovations. 展开更多
关键词 Organic Matter Water Stress VOLUMETRIC Soil Moisture STOMATAL CONDUCTANCE LEAF Area Index
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Trace Elements Loss Characteristics in Runoff Discharge from Tobacco-Growing Red Soil in Sichuan Province of China
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作者 Angelique Iradukunda Dan Zhang +4 位作者 Tianhui Ye Eliezel Habineza Maoqiang Wang Henriette Peace Uwamahoro Philbert Mperejekumana 《Journal of Agricultural Chemistry and Environment》 CAS 2022年第3期163-183,共21页
Trace elements are found in small concentrations in soil, yet plants require them for physiological functions. The runoff process leads to soil fertility loss by shifting soil particles and elements, and deposits them... Trace elements are found in small concentrations in soil, yet plants require them for physiological functions. The runoff process leads to soil fertility loss by shifting soil particles and elements, and deposits them to a different position. However, there is a lack of information about the amount of trace elements that flow in tobacco-growing red soil during the natural rainy seasons due to runoff. In this study, runoff discharge was collected from two different soil mulching conditions (straw and no straw) at 15?, in Miyi county of Sichuan province, to evaluate the characteristics of trace elements in runoff discharge. The runoff discharge was filtered to separate water (runoff) from sediment. The concentrations of the elements were analyzed in samples obtained from 9 erosive rainfall events, with 3 replications for every sample. The considered trace elements were Zinc (Zn), Copper (Cu), and Molybdenum (Mo). In addition, the total amount of each element loss per unit area (total loss) was also calculated statistically. The results revealed different concentrations and total losses for the selected trace elements. The total loss in runoff ranged from 10.82 to 194.05 mg/ha, 0.62 to 18.91 mg/ha, and 0.32 to 2.37 mg/ha for Zn, Cu, and Mo, respectively. The total loss in sediment ranged from 54.65 to 12036.34 mg/ha, 44.74 to 5285.30 mg/ha, and 1.78 to 399.82 mg/ha for Zn, Cu, and Mo, respectively. Rainfall intensity, runoff depth, and sediment yield showed distinct positive correlations with the trace elements losses. The loss reduced with the addition of straw in the experimental area. Since each trace element showed distinct characteristics in the runoff and sediment, it is crucial to assess the loss of trace elements in runoff discharge from different agronomic practices. In turn, various sustainable practices of preventing soil fertility loss will be identified. 展开更多
关键词 Trace Elements Runoff Discharge Sediment Red Soil Tobacco Farming
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A test of the mycorrhizal-associated nutrient economy framework in two types of tropical rainforests under nutrient enrichments
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作者 Qingshui Yu Suhui Ma +7 位作者 Xiaofeng Ni Lai Jiang Zhang Zhou Jiangling Zhu Chengjun Ji Zhiyao Tang Xiaoli Cheng Jingyun Fang 《Forest Ecosystems》 SCIE CSCD 2023年第1期12-20,共9页
Shifts in tree species and their mycorrhizal associations driven by global change play key roles in biogeochemical cycles. In this paper, we proposed a framework of the mycorrhizal-associated nutrient economy(MANE), a... Shifts in tree species and their mycorrhizal associations driven by global change play key roles in biogeochemical cycles. In this paper, we proposed a framework of the mycorrhizal-associated nutrient economy(MANE), and tested it using nutrient addition experiments conducted in two tropical rainforests. We selected two tropical rainforests dominated by arbuscular mycorrhizal(AM) and ectomycorrhizal(ECM) trees, and established eighteen20 m×20 m plots in each rainforest. Six nitrogen(N) and phosphorus(P) addition treatments were randomly distributed in each rainforest with three replicates. We examined the differences in soil carbon(C) and nutrient cycling, plant and litter productivity between the two rainforests and their responses to 10-year inorganic N and P additions. We also quantified the P pools of plants, roots, litter, soil and microbes in the two rainforests. Overall,distinct MANE frameworks were applicable for tropical rainforests, in which soil C, N and P were cycled primarily in an inorganic form in the AM-dominated rainforest, whereas they were cycled in an organic form in the ECMdominated rainforest. Notably, the effects of mycorrhizal types on soil P cycling were stronger than those on C and N cycling. The intensified N and P deposition benefited the growth of AM-dominated rainforests instead of ECMdominated rainforests. Our findings underpin the key role of mycorrhizal types in regulating biogeochemical processes, and have important implications for predicting the ecological consequences of global changes. 展开更多
关键词 Nutrient cycling Nutrient addition Mycorrhizal association Arbuscular mycorrhiza ECTOMYCORRHIZA Tropical rainforest
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Plant–rodent interactions after a heavy snowfall decrease plant regeneration and soil carbon emission in an old-growth forest
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作者 Qingqiu Zhou Debao Li +3 位作者 Shangwen Xia Zhe Chen Bo Wang Jianping Wu 《Forest Ecosystems》 SCIE CSCD 2021年第2期403-412,共10页
Background:Climate extremes are likely to become more common in the future and are expected to change ecosystem processes and functions.As important consumers of seeds in forests,rodents are likely to affect forest re... Background:Climate extremes are likely to become more common in the future and are expected to change ecosystem processes and functions.As important consumers of seeds in forests,rodents are likely to affect forest regeneration following an extreme weather event.In April 2015,we began a field experiment after an extreme snowfall event in January 2015 in a primary forest that was>300 years old.The heavy snow broke many tree limbs,which presumably reduced the numbers of seeds produced.Two treatments(rodent exclusion and rodent access)were established in the forest,in which rodent exclusion were achieved by placing stainlessness nets around the plot borders.Plant abundance,plant species richness,soil properties,soil microbial community composition,basal and substrate-induced respiration were determined in December 2017.Results:Plant abundance and species richness significantly increased,but soil microbial biomass decreased with rodent exclusion.Urease activity and soil basal respiration also significantly decreased with rodent exclusion.Most other soil properties,however,were unaffected by rodent exclusion.The relative effects of multiple predictors of basal respiration were mainly explained by the composition of the soil microbial community.Conclusions:After a heavy snowfall in an old-growth forest,exclusion of rodents increased plant regeneration and reduced microbial biomass and soil basal respiration.The main factor associated with the reduction in soil basal respiration was the change in the composition of the soil microbial community.These findings suggest that after a heavy snowfall,rodents may interfere with forest regeneration by directly reducing plant diversity and abundance but may enhance carbon retention by indirectly altering the soil microbial community. 展开更多
关键词 Climate extreme PLFAS Soil respiration Forest ecosystem Enzyme activity
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Response of Nitrous Oxide Flux to Addition of Anecic Earthworms to an Agricultural Field
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作者 José A. Amador Edward J. Avizinis 《Open Journal of Soil Science》 2013年第2期100-106,共7页
The burrowing and feeding activities of earthworms may have a strong effect on the flux of N2O from agricultural soils. As such, shifts to agricultural management practices that increase the number of earthworms requi... The burrowing and feeding activities of earthworms may have a strong effect on the flux of N2O from agricultural soils. As such, shifts to agricultural management practices that increase the number of earthworms require an understanding of the role of earthworms in N2O dynamics. We conducted a field experiment to examine the effects of addition of anecic earthworms (Lumbricus terrestris) on N2O flux in a field previously planted with corn (Zea mays) in southern Rhode Island, USA. Plots were amended with (15NH4)2SO4 and either 0 (CTL) or 48 L. terrestris m-2 (EW). The flux of N2O, 15N2O and 15N2 was measured over 28 days between October and November 2008. The EW treatment had a significantly higher flux of N2O and 15N2O 1 - 3 days after 15NH4 addition. No treatment effects were observed on 15N2 flux. The addition of earthworms significantly increased (Day 1) and decreased (Day 12) the mole fraction of N2O relative to the CTL. Our results suggest that anecic earthworm additions can increase N2O flux from inorganic fertilizer N amendments, but the effects appear to short-lived. 展开更多
关键词 Lumbricus terrestris Anecic Earthworms FERTILIZER Nitrogen Nitrous OXIDE FLUX DENITRIFICATION
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Cultivable Nitrogen Fixing Bacteria from Extremely Alkaline-Saline Soils
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作者 Yendi E. Navarro-Noya Marco Luna-Guido Luc Dendooven 《Advances in Microbiology》 2016年第6期412-423,共12页
Three soils with different Electrolytic Conductivity (EC) from the former Lake Texcoco (soil with low EC 1.2 dS·m<sup>-1</sup>, medium with EC 83.1 - 107.8 dS·m<sup>-1</sup>, and high... Three soils with different Electrolytic Conductivity (EC) from the former Lake Texcoco (soil with low EC 1.2 dS·m<sup>-1</sup>, medium with EC 83.1 - 107.8 dS·m<sup>-1</sup>, and high with EC 137.3 - 152.5 dS&bull;m<sup>-1</sup>) were used to isolate nitrogen-fixing bacterial strains through enrichment cultures in nitrogen-free media. The medium and high EC in the soil affected negatively the nitrogen-fixing activity, which was generally ten times lower compared to the activity in the soil with low EC. Twenty-one bacterial strains were isolated, identified and characterized for their nitrogen fixation capacity. The diazotrophic genetic potential of all isolates was confirmed by amplification and sequencing of partial nifH and nifD genes and diazotrophic activity quantified by the acetylene reduction assay. Azospirillum brasilense, and several species of Paenibacillus (P. fujiensis, P. durus, P. borealis, P. graminis, P. massiliensis and P. wynnii) were identified. Isolates belonging to the Paenibacillus genus were found in the three soils. Paenibacillus fujiensis and P. durus showed a high nitrogenase activity. The phylograms based on nifH and nifD gene sequences were consistent with 16S rRNA gene phylogeny. 展开更多
关键词 DIAZOTROPHS Extremophyles Haloalkaline HALOTOLERANT PAENIBACILLUS
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Combined application of organic manure and chemical fertilizers stabilizes soil N-cycling microflora
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作者 Ruibo Sun Daozhong Wang +5 位作者 Zhibin Guo Keke Hua Xisheng Guo Yan Chen Binbin Liu Haiyan Chu 《Soil Ecology Letters》 CSCD 2023年第3期5-11,共7页
Straw and manure are widely applied to agricultural systems,and greatly shape soil N-cycling microflora.However,we still lack a comprehensive understanding of how these organic materials structure soil N-cycling micro... Straw and manure are widely applied to agricultural systems,and greatly shape soil N-cycling microflora.However,we still lack a comprehensive understanding of how these organic materials structure soil N-cycling microbial communities.In this study,metagenomic analysis was performed to investigate the compositional variation in N-cycling microbial communities in a 30-year long-term experiment under five fertilization regimes:no fertilization(Control),chemical fertilization only(NPK),and NPK with wheat straw(NPK+HS),pig manure(NPK+PM),and cow manure(NPK+CM).Long-term NPK application differentially changed N-cycling gene abundance and greatly altered N-cycling microbial community structure.NPK+HS resulted in a similar pattern to NPK in terms of gene abundance and community structure.However,NPK+PM and NPK+CM significantly increased most genes and resulted in a community similar to that of the Control.Further analysis revealed that serious soil acidification caused by long-term NPK fertilization was a major factor for the variation in N-cycling microbial communities.The addition of alkaline manure,rather than wheat straw,stabilized the N-cycling microbial community structure presumably by alleviating soil acidification.These results revealed the strong impact of soil acidification on microbial N-cycling communities and illustrated the possibility of resolving nitrogen-related environmental problems by manipulating pH in acidified agricultural soils. 展开更多
关键词 microbial nitrogen cycle METAGENOMICS long-term fertilization soil acidification MANURE
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Optimizing nitrogen management in the food system for sustainable development: a case study of Quzhou County
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作者 Fanlei MENG Menru WANG +5 位作者 Yong HOU Lin MA Wenqi MA Xuejun LIU Fusuo ZHANG Wen XU 《Frontiers of Agricultural Science and Engineering》 CSCD 2024年第1期113-121,共9页
Nitrogen(N) is an essential nutrient for food production. The rapid increase in population requires high inputs of N to meet the growing food demand. If not managed well, the substantial loss of N from the food system... Nitrogen(N) is an essential nutrient for food production. The rapid increase in population requires high inputs of N to meet the growing food demand. If not managed well, the substantial loss of N from the food system has multiple impacts on grain yield, air and water pollution, and the economic benefits of agricultural. Multi-objective(food security, environmental sustainability and economic sustainability) synergistic consideration of N management in the food system is still lacking. This study employed strategies for optimizing N management in the food system, using Quzhou County as a typical example on the North China Plain. Firstly, a food chain approach was adopted to understand drivers and reasons behind N losses from the food system.Secondly, a top-down approach was used to define multi-objective N management, taking into consideration food security, environmental sustainability and economic sustainability. Multi-objective N management aims to reduce N losses to the environment and increase N use efficiencies,while simultaneously increasing yields and economic benefits. Thirdly, 3R(reduce-retain-recycle) N management strategies were identified for specific crops and animals through a bottom-up approach and then analyzed the potential of these strategies to achieve the multi-objectives. Finally, there is a discussion of how to engage different stakeholders to promote the technologies implementation. This study provides new insights into the synergistic achievement of multi-objective N management in the food system and the development of environmentally-friendly agriculture. 展开更多
关键词 Agriculture green development food system MULTI-OBJECTIVE nitrogen management
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China requires region-specific manure treatment and recycling technologies 被引量:2
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作者 Zhaohai Bai Xuan Wang +5 位作者 Xiaofei Wu Weishuai Wang Ling Liu Xiaohang Zhang Xiangwen Fan Lin Ma 《Circular Agricultural Systems》 2021年第1期1-8,共8页
Heterogenous distribution of crops,feed and livestock across China has halted the circulation of nutrients within the agricultural system and is responsible for massive nutrient losses[1,2].Generated livestock manure ... Heterogenous distribution of crops,feed and livestock across China has halted the circulation of nutrients within the agricultural system and is responsible for massive nutrient losses[1,2].Generated livestock manure exceeded optimal crop requirements in 30%and 50%of over 2300 studied counties when there was improved recycling of nitrogen(N)and phosphorus(P)in the food chain,repectively[2].Most of these counties are located in southern and coastal areas,whereas there is a deficit of livestock manure in northern and western China.Such heterogenous distribution of crop-livestock production led to 4.0 Tg manure N and 0.9 Tg manure P[2],which are economically impossible to recycle and will end up in the surrounding environment.In addition,about 40%of feed protein consumed by domestic livestock production relied on importation,putting China’s livestock production supply at high risk in the post pandemic world[3].Hence,China is facing the twin issues of too many manure nutrients but too little feed nutrients simultaneously. 展开更多
关键词 MANURE crops LIVESTOCK
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Dynamics of ^(14)C-labelled Glucose and NH_4^+ in a Regularly Flooded Extremely Alkaline Saline Soil
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作者 Luc DENDOOVEN Eustacio RAMIREZ-FUENTES +4 位作者 Rocio ALCANTARA-HERNDEZ Cesar VALENZUELA-ENCINAS Katia Berenice SANCHEZ-LOPEZ Marco LUNA-GUIDO Victor Manuel RUIZ-VALDIVIEZO 《Pedosphere》 SCIE CAS CSCD 2015年第2期230-239,共10页
Flooding an extremely alkaline(pH 10.6) saline soil of the former Lake Texcoco to reduce salinity will affect the soil carbon(C)and nitrogen(N) dynamics.A laboratory incubation experiment was done to investigate how d... Flooding an extremely alkaline(pH 10.6) saline soil of the former Lake Texcoco to reduce salinity will affect the soil carbon(C)and nitrogen(N) dynamics.A laboratory incubation experiment was done to investigate how decreasing soil salt content affected dynamics of C and N in an extremely alkaline saline soil.Sieved soil with electrical conductivity(EC) of 59.2 dS m^(-1) was packed in columns,and then flooded with tap water,drained freely and conditioned aerobically at 50%water holding capacity for a month.This process of flooding-drainage-conditioning was repeated eight times.The original soil and the soil that had undergone one,two,four and eight flooding-drainage-conditioning cycles were amended with 1000 mg glucose-^(14)C kg^(-1) soil and 200 mg NH_4^+-N kg^(-1)soil,and then incubated for 28 d.The CO_2 emissions,soil microbial biomass,and soil ammonium(NE_4^+),nitrite(NO_2^-) and nitrate(NO_3^-) were monitored in the aerobic incubation of 28 d.The soil EC decreased from 59.2 to 1.0 dS m^(_1) after eight floodings,and soil pH decreased from 10.6 to 9.6.Of the added ^(14)C-labelled glucose,only 8%was mineralized in the original soil,while 24%in the soil flooded eight times during the 28-d incubation.The priming effect was on average 278 mg C kg^(-1) soil after the 28-d incubation.Soil microbial biomass C(mean 66 mg C kg^(-1) soil) did not change with flooding times in the unamended soil,and increased 1.4 times in the glucose-NH_4^+-amended soil.Ammonium immobilization and NO_2^- concentration in the aerobically incubated soil decreased with increasing flooding times,while NO_3^- concentration increased.It was found that flooding the Texcoco soil decreased the EC sharply,increased mineralization of glucose,stimulated nitrification,and reduced immobilization of inorganic N,but did not affect soil microbial biomass C. 展开更多
关键词 葡萄糖 土壤微生物生物量碳 碱性 动态变化 标记 盐渍土 土壤PH值 浸水
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Greenhouse Gas Emissions and Growth of Wheat Cultivated in Soil Amended with Digestate from Biogas Production
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作者 Liliana PAMPILLON-GONZALEZ Marco LUNA-GUIDO +5 位作者 Victor Manuel RUIZ-VALDIVIEZO Olivia FRANCO-HERNANDEZ Fabign FERNANDEZ-LUQUENO Oetavio PAREDES-LOPEZ Gerardo HERNANDEZ Luc DENDOOVEN 《Pedosphere》 SCIE CAS CSCD 2017年第2期318-327,共10页
Digestate, the product obtained after anaerobic digestion of organic waste for biogas production, is rich in plant nutrients and might be used to fertilize crops. Wheat(Triticum spp. L.) was fertilized with digestate,... Digestate, the product obtained after anaerobic digestion of organic waste for biogas production, is rich in plant nutrients and might be used to fertilize crops. Wheat(Triticum spp. L.) was fertilized with digestate, urea, or left unfertilized and cultivated in the greenhouse for 120 d. Emissions of greenhouse gasses(carbon dioxide(CO_2), methane(CH_4), and nitrous oxide(N_2O)) were monitored and plant growth characteristics were determined at harvest. The digestate was characterized for heavy metals, pathogens, and C and N mineralization potential in an aerobic incubation experiment. No Salmonella spp., Shigella spp., or viable eggs of helminths were detected in the digested pig slurry, but the number of faecal coliforms was as high as 3.6 × 10~4colony-forming units(CFU) g-^(1)dry digestate. The concentrations of heavy metals did not surpass the upper limits established by US Environmental Protection Agency(EPA). After 28 d, 17% of the organic C(436 g kg^(-1)dry digestate) and 8% of the organic N(6.92 g kg^(-1)dry digestate)were mineralized. Emissions of CO_2 and CH_4 were not significantly affected by fertilization in the wheat-cultivated soil, but digestate significantly increased the cumulative N_2O emission by 5 times compared to the urea-amended soil and 63 times compared to the uncultivated unfertilized soil. It could be concluded that digestate was nutrient rich and low in heavy metals and pathogens, and did not affect emissions of CH_4 and CO_2 when applied to a soil cultivated with wheat, but increased emission of N_2O. 展开更多
关键词 温室气体排放 土壤栽培 小麦生长 沼气肥 修订 重金属浓度 美国环境保护局 粪大肠菌群
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Bacterial and archaeal communities in saline soils from a Los Negritos geothermal area in Mexico
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作者 Joseph GUEVARA-LUNA Mario HERNÁNDEZ-GUZMÁN +4 位作者 Nina MONTOYA-CIRIACO Luc DENDOOVEN Marina Olivia FRANCO-HERNÁNDEZ Paulina ESTRADA-DE LOS SANTOS María Soledad VÁSQUEZ-MURRIETA 《Pedosphere》 SCIE CAS CSCD 2023年第2期312-320,共9页
In recent years,there has been a growing need to understand how salinity affects microbial communities in agricultural soils.Archaeal and bacterial community diversities and structures were investigated by high-throug... In recent years,there has been a growing need to understand how salinity affects microbial communities in agricultural soils.Archaeal and bacterial community diversities and structures were investigated by high-throughput sequencing analysis of their 16S rRNA in two arable soils with low electrical conductivity(EC)(2.3 and 2.6 dS m^(-1))and a saline soil(EC=17.6 dS m^(-1)).The dominant bacterial phyla in the soils were Proteobacteria(relative abundance(RA)=46.2%),followed by Acidobacteria(RA=13.1%)and Actinobacteria(RA=10.0%),whereas Serratia(RA=6.0%)and Bacillus(RA=4.0%)were the dominant bacterial genera.Candidatus Nitrososphaera(53.5%)was the dominant archaeal phylotype in the arable soils,whereas Nitrosopumilus(RA=0.4%)dominated in the saline soil.The archaeal and bacterial community structures were different between the soils and significantly correlated with soil sand,arsenic,barium,and antimony contents,but not with soil salinity. 展开更多
关键词 agricultural soil compositional approach microbial community mud volcano soil salinity soluble anion
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Sequence-based Functional Metagenomics Reveals Novel Natural Diversity of Functional CopA in Environmental Microbiomes
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作者 Wenjun Li Likun Wang +3 位作者 Xiaofang Li Xin Zheng Michael F.Cohen Yong-Xin Liu 《Genomics, Proteomics & Bioinformatics》 SCIE CAS CSCD 2023年第6期1182-1194,共13页
Exploring the natural diversity of functional genes/proteins from environmental DNA in high throughput remains challenging.In this study,we developed a sequence-based functional metagenomics procedure for mining the d... Exploring the natural diversity of functional genes/proteins from environmental DNA in high throughput remains challenging.In this study,we developed a sequence-based functional metagenomics procedure for mining the diversity of copper(Cu)resistance gene copA in global microbiomes,by combining the metagenomic assembly technology,local BLAST,evolutionary trace analysis(ETA),chemical synthesis,and conventional functional genomics.In total,87 metagenomes were collected from a public database and subjected to copA detection,resulting in 93,899 hits.Manual curation of 1214 hits of high confidence led to the retrieval of 517 unique CopA candidates,which were further subjected to ETA.Eventually,175 novel copA sequences of high quality were discovered.Phylogenetic analysis showed that almost all these putative CopA proteins were distantly related to known CopA proteins,with 55 sequences from totally unknown species.Ten novel and three known copA genes were chemically synthesized for further functional genomic tests using the Cu-sensitive Escherichia coli(DcopA).The growth test and Cu uptake determination showed that five novel clones had positive effects on host Cu resistance and uptake.One recombinant harboring copA-like 15(copAL15)successfully restored Cu resistance of the host with a substantially enhanced Cu uptake.Two novel copA genes were fused with the gfp gene and expressed in E.coli for microscopic observation.Imaging results showed that they were successfully expressed and their proteins were localized to the membrane.The results here greatly expand the diversity of known CopA proteins,and the sequence-based procedure developed overcomes biases in length,screening methods,and abundance of conventional functional metagenomics. 展开更多
关键词 Functional metagenomics Natural diversity COPA Evolutionary trace analysis Cu resistance
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Methanogenesis and Methanotrophy in Soil: A Review 被引量:10
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作者 N.SERRANO-SILVA Y.SARRIA-GUZMN +1 位作者 L.DENDOOVEN M.LUNA-GUIDO 《Pedosphere》 SCIE CAS CSCD 2014年第3期291-307,共17页
Global warming,as a result of an increase in the mean temperature of the planet,might lead to catastrophic events for humanity.This temperature increase is mainly the result of an increase in the atmospheric greenhous... Global warming,as a result of an increase in the mean temperature of the planet,might lead to catastrophic events for humanity.This temperature increase is mainly the result of an increase in the atmospheric greenhouse gases(GHG)concentration.Water vapor,carbon dioxide(CO2),methane(CH4)and nitrous oxide(N2O)are the most important GHG,and human activities,such as industry,livestock and agriculture,contribute to the production of these gases.Methane,at an atmospheric concentration of 1.7μmol mol-1currently,is responsible for 16%of the global warming due to its relatively high global warming potential.Soils play an important role in the CH4cycle as methanotrophy(oxidation of CH4)and methanogenesis(production of CH4)take place in them.Understanding methanogenesis and methanotrophy is essential to establish new agriculture techniques and industrial processes that contribute to a better balance of GHG.The current knowledge of methanogenesis and methanotrophy in soils,anaerobic CH4 oxidation and methanotrophy in extreme environments is also discussed. 展开更多
关键词 甲烷 土壤 工业生产过程 CH4氧化 温室气体 展望 全球气候变暖 全球变暖
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A Meta-Analysis on Phenotypic Variation in Cadmium Accumulation of Rice and Wheat:Implications for Food Cadmium Risk Control 被引量:15
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作者 LI Xiaofang ZHOU Dongmei 《Pedosphere》 SCIE CAS CSCD 2019年第5期545-553,共9页
In some densely-populated countries, farmland has been widely cadmium (Cd) contaminated, and the utilization of the contaminated farmland for crop production is currently unavoidable. This necessitates the use of low-... In some densely-populated countries, farmland has been widely cadmium (Cd) contaminated, and the utilization of the contaminated farmland for crop production is currently unavoidable. This necessitates the use of low-Cd crops (i.e., pollution-safe cultivars, the crop varieties with the ability to accumulate a low level of Cd in their edible parts when grown on polluted soil) in these areas and highlights the importance of knowledge on phenotypic variation in crop Cd accumulation for food Cd risk control. Studies on phenotypic variation in heavy metal accumulation started decades ago for a wide range of crops, and synthesis of the scattered experimental results in the literature is in need. We built a Low-Cd Crops Database based on literature research, and relevant meta-analysis was performed to quantitatively explore the phenotypic variation in Cd uptake and translocation of rice and wheat. Considerable variability existed among rice (median grain Cd bioconce nt ration factor (BCF) of 0.10) and wheat (median grain Cd BCF of 0.21) phenotypes in grain Cd accumulation, and this variability was labile to soil pH and the level of Cd stress. Wheat statistically had a higher root-to-shoot Cd-translocating ability than rice, highlighting potential food Cd risks and the importance of growing low-Cd wheat in slightly Cd-contaminated regions. Meanwhile, no correlations were detected among soil-to-root, root-to-shoot, and shoot-to-grain translocation factors, implying that Cd uptake and internal translocation in crops were probably controlled by different underlying gene tic mechanisms. Root-to-shoot Cd transport could be a favorable target trait for selecting and breeding low-Cd rice and wheat. In all, this review provides a comprehensive low-Cd crop list for remediation practice and a systematic meta-analysis inferring food Cd risks based on plant capacity for Cd accumulation and desired traits for low-Cd crop breeding. 展开更多
关键词 bioconcentration factor Cd contamination Cd stress heavy metal low-Cd crops plant uptake polution-safe cultivars soil pH translocation factor
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Functional Metagenomics to Mine Soil Microbiome for Novel Cadmium Resistance Genetic Determinants 被引量:2
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作者 ZHENG Xin CHEN Liang +2 位作者 CHEN Miaomiao CHEN Jinghao LI Xiaofang 《Pedosphere》 SCIE CAS CSCD 2019年第3期298-310,共13页
Metal resistance genes are valuable resources for genetic engineering of bioremediation tools. In this study, novel genetic determinants involved in cadmium(Cd) resistance were identified using a small-insert metageno... Metal resistance genes are valuable resources for genetic engineering of bioremediation tools. In this study, novel genetic determinants involved in cadmium(Cd) resistance were identified using a small-insert metagenomic DNA library constructed from an arable soil microbiome. A total of 16 recombinant plasmids harboring 49 putative open reading frames(ORFs) were found to be associated with enhanced Cd tolerance. In addition to several ORFs for ion transport/chelation and stress response, most ORFs were assumed to be associated with non-direct metal resistance mechanisms such as energy metabolism, protein/amino acid metabolism,carbohydrate/fatty acid metabolism, and signal transduction. Furthermore, 13 ORFs from five clones selected at random were cloned and subject to Cd resistance assay. Eight of these ORFs were positive for Cd resistance when expressed in Escherichia coli, among which four ORFs significantly reduced Cd accumulation and one increased Cd enrichment of the host cells. Notably, C1-ORF1, potentially encoding a histidine kinase-like adenosine triphosphatase, was the most effective Cd resistance determinant and reduced host Cd accumulation by 33.9%. These findings highlight the vast capacity of soil microbiome as a source of gene pool for bioengineering.The novel genetic determinants for Cd resistance identified in this study merit further systematic explorations into their molecular mechanisms. 展开更多
关键词 BIOREMEDIATION GENETIC engineering HISTIDINE kinase metal resistance gene open reading frame recombinant PLASMID
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Visualizing the emerging trends of biochar research and applications in 2019:a scientometric analysis and review 被引量:15
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作者 Ping Wu Zeyu Wang +3 位作者 Hailong Wang Nanthi S.Bolan Yujun Wang Wenfu Chen 《Biochar》 2020年第2期135-150,共16页
Biochar,derived from thermal pyrolysis of biomass,has been regarded as a low-cost,sustainable and beneficial material and widely applied in agriculture,environment and energy during the last two decades.To elucidate t... Biochar,derived from thermal pyrolysis of biomass,has been regarded as a low-cost,sustainable and beneficial material and widely applied in agriculture,environment and energy during the last two decades.To elucidate the research status timely and future trends in biochar field,CiteSpace is used to systematically analyze the related literature retrieved from the Web of Science core collection in 2019.Based on the keywords clustering analysis,it was found that“biochar production”,“organic pollutants removal”,“heavy metals immobilization”,“bioremediation”were the main hotspots in research covering biochar.“Bioremediation”is an emerging topic and deserves extensive attention due to its highly effective and environmentally friendly treatment of pollutants.Improving the phytoremediation effect,immobilizing functional microorganisms on biochar,and using microorganisms as raw materials to produce biochar were the common methods of biochar-assisted bioremediation.While studies focused on“soil quality and plant growth”and“biochar and global climate change”decreased,investigations concentrated in the toxicity of biochar to soil biota and ruminants are sustainably growing.Research on direct and catalytic thermal pyrolysis of green waste(mainly microalgae)for biofuels(bio-oil,biodiesel,syngas,etc.)and biochar production is increasing.Converting municipal wastes(e.g.,sewage sludge,fallen leaves)into biochar through pyrolysis was a suitable treatment for municipal waste and became a popular topic in recent time.Moreover,the biochar produced from these municipal wastes exhibited excellent performance in the removal of pollutants from wastewater and soil.This review may help to identify future directions in biochar research and applications. 展开更多
关键词 BIOCHAR CiteSpace TOXICITY BIOREMEDIATION Research direction
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Effects of logging on the trade-off between seed and sprout regeneration of dominant woody species in secondary forests of the Natural Forest Protection Project of China 被引量:1
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作者 Rong Li Qiaoling Yan +3 位作者 Jin Xie Jing Wang Ting Zhang Jiaojun Zhu 《Ecological Processes》 SCIE EI 2022年第1期171-188,共18页
Background:Promoting natural regeneration(including seed and sprout regeneration)of dominant woody species is essential for restoring secondary forests.However,such restoration processes have been decelerated by the e... Background:Promoting natural regeneration(including seed and sprout regeneration)of dominant woody species is essential for restoring secondary forests.However,such restoration processes have been decelerated by the enclosure under Natural Forest Protection Project of China(NFPP).It remains unclear how to implement appropriate management measures(e.g.,whether to apply logging and the suitable intensity)to facilitate natural regeneration according to the responses of two regeneration modes to management measures.We monitored the early stages of seed regeneration(seed rain,soil seed bank,and 1–3-year-old seedlings)and sprout regeneration(stump sprout rate,stump survival rate,probability of sprouting,and number of sprouts per stump)over the first 3 years(2017–2019)after logging under three intensity regimes(control[0%],25%,and 50%logging intensity)in secondary forests.Results:The seed rain density decreased markedly,seedling density increased insignificantly after logging,and logging promoted seedling survival at an increasing conversion rate of 3-year-old seedlings(37.5%under 0%,100%under 25%,and 80.95%under 50%logging)compared to those of the control.The proportion of 3-year-old seedlings increased with logging intensity and was the highest(16.2%)at 50%logging intensity.Sprout density was not affected by logging intensity,however,under 25%and 50%logging,it decreased by 27%and 6%in 2018,and by 37%and 33%in 2019,respectively.Seedling density was 41.65-and 15.31-fold higher than that of sprouts in the 50%and 25%logging treatments,respectively.Based on the relative contributions of the two regeneration modes after logging,three groups of natural regeneration patterns were classified for dominant woody species in temperate secondary forests,i.e.,seed regeneration preference(Betula dahurica,Carpinus cordata and Fraxinus mandshurica),sprout regeneration preference(Acer mono and Acer pseudosieboldianum)and no preference(Quercus mongolica,Fraxinus rhynchophylla,and Juglans mandshurica).Conclusion:In addition to enclosure,appropriate logging can be applied according to the responses of various natural regeneration patterns of dominant woody species to logging in temperate secondary forests under the NFPP. 展开更多
关键词 Secondary forest Seed regeneration Sprout regeneration Seedling recruitment Light availability
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Anthracene Removal and Mineral N Dynamics in a Surfactant-Amended Soil
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作者 M.R.CRDENAS-AQUINO G.SALOMóN-HERNNDEZ +3 位作者 .AGUILAR-CHVEZ M.L.LUNA-GUIDO R.MARSCH L.DENDOOVEN 《Pedosphere》 SCIE CAS CSCD 2014年第6期783-790,共8页
Surfactants, such as non-ionic Surfynol485(ethoxylated 2,4,7,9-tetramethyl-5-decyne-4,7-diol), have been applied to accelerate removal of polycyclic aromatic hydrocarbons from soil. This study investigated the dissipa... Surfactants, such as non-ionic Surfynol485(ethoxylated 2,4,7,9-tetramethyl-5-decyne-4,7-diol), have been applied to accelerate removal of polycyclic aromatic hydrocarbons from soil. This study investigated the dissipation of anthracene, and carbon(C) and nitrogen(N) mineralization in soil amended with non-ionic Surfynol485 at different rates. Soil samples of a Typic Fragiudept taken from Otumba, Mexico were spiked with anthracene at a final concentration of 520 mg kg-1dry soil using acetone as solvent, amended with 0.0, 24.9, 49.8 or 124.4 g kg-1soil of the surfactant and incubated in the laboratory. The soil not amended with anthracene,acetone and the surfactant was used as a control. Dynamics of C and N and the concentration of anthracene were monitored for 56 d. After 56 d of incubation, 38% of the anthracene was removed from the unamended soil, and 47%, 55% and 66% of the anthracene were removed when 24.9, 49.8 and 124.4 g kg-1of the surfactant were applied, respectively. Application of acetone, anthracene or surfactant increased the emission of CO2, but decreased the mineral N compared to the unamended control. Applying the surfactant to the acetone or anthracene-amended soil reduced emission of CO2, but increased the mineral N at the lower application rates of the surfactant. It was found that the application of the non-ionic surfactant increased the bioavailability of anthracene and thus its removal from soil, increased C mineralization, but decreased N mineralization. Consequently, the application of non-ionic surfactant could be easily used to accelerate the removal of pollutants from hydrocarbon-contaminated soils, but mineral N in the soil would decrease, which might inhibit plant growth. 展开更多
关键词 非离子表面活性剂 氮动态 土壤 修订 矿质 拆卸 二氧化碳
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森林火灾后云南高原森林真菌群落响应的物种特异性
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作者 Ling-Ling Wang Qing-Qiu Zhou +6 位作者 Wen-Hua Su Yun-Jian Xu Qin-Dong Qian Xiong Yang De-Yun Chen Zhe Chen Jian-Ping Wu 《Journal of Plant Ecology》 SCIE CSCD 2023年第1期37-49,共13页
森林地下部分包含了丰富的真菌多样性。森林火灾产生的高温和对地上植被的破坏,会改变真菌的群落组成并影响后期森林的恢复。云南是我国重要的林区,也是森林火灾的频发区。本文旨在研究以云南松(Pinus yunnanensis)和柠檬桉(Eucalyptus ... 森林地下部分包含了丰富的真菌多样性。森林火灾产生的高温和对地上植被的破坏,会改变真菌的群落组成并影响后期森林的恢复。云南是我国重要的林区,也是森林火灾的频发区。本文旨在研究以云南松(Pinus yunnanensis)和柠檬桉(Eucalyptus citriodora)为主要树种的混交林在林冠火发生后地下真菌的响应。实验采集了两种树种下的矿质土、根际土和细根3个位点的样品,通过高通量测序手段,分析了真菌的多样性、群落组成、网络结构和生态营养型等信息。结果发现,3个采样点之间的群落组成具有显著性差异,矿质土壤中的alpha多样性高于根际土壤和细根中的alpha多样性。对于树种而言,柠檬桉的真菌网络复杂程度高于云南松。两种树种的前10个优势属以腐生真菌为主,其中云南松的毛霉菌门相对丰度高于柠檬桉。在生物标志物的比较中,云南松的根和根际土壤中均以外生菌根真菌为主,而柠檬桉的根和根际土壤则表现为以腐生真菌和共生真菌为主。我们的研究结果表明森林火灾后云南高原典型森林中真菌群落的响应具有物种特异性。 展开更多
关键词 真菌 林火 根际土 细根 云南松(Pinus yunnanensis) 柠檬桉(Eucalyptus citriodora) 云南高原
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